 |
|
|
|
|
|
|
|
|
|
|
|
Recombination Sites | |
|
|
|
|
|
Internal Transposable Elements | |
|
|
Internal Repeats | |
|
|
|
|
|
|
|
|
|
|
|
| Name: Tn6137 |
|
| Family: Tn3 Group: Tn5393 |
|
| Evidence of Transposition: no |
|
|
|
| Host |
 |
|
| Host Organism: | Sphingobium japonicum | Molecular Source: | chr 2 |
| Place of Origin: | Japan | Date of Isolation: | 2011 |
|
| Map |
|
| Terminal Inverted Repeats (IR) |
|
|
| | |
| IRL (Length: 45 bp) |  | GGGGTGACTGCACGAAAGTGACTTATCTGCACGCTAAGAGCGAAC |
| IRR (Length: 45 bp) | | GGGGTGACTACACGAAAGTGACGCATCCGCACGCTAAGCGCGAAC |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTGACTG CACGAAAGTG ACTTATCTGC ACGCTAAGAG CGAACGGACC GGGAACGCTG GGACTTTGTG TTCTTCTCCG TGGCTTCGAG GGCTTTGTAG 100
AGGGCGGTTT TGCCGATCTT GAGGCGCGCG GCGGCCTCGC GAACTGTGAG GCCGGAAGCG ATATGTTCGC GCGCCTTGCG GAGCTTGTCA GGTGTGACCA 200
CTGGCCGCCG CCCACCGGGG CGACCTCGCT CGCGAGCGGC CTTGAGGCCT GCATGGGTGC GCTCCCGGAT CAGATCGCGC TCAAACTGGG CAAGCGAGCC 300
GAAGATGTTG AACACCAGCA TCCCGCCCGA AGTGGTGGTG TCGATGTTCT CGGTGAGCGA GCGGAACCCG ATACCTCGCG TCGCTAGCTC GCCGACCTTC 400
TCAATCAGAT GGCTCATCGA GCGCCCAAGA CGGTCGAGTT TCCAAACCAC CAGCGTGTCG CCGCTGCGCA GATAGGCGAG CGCCTCGGCC AGGCCGGGCC 500
GATCGGCTTT TGCACCAGAT GCGTGATCGT CGAATATCCG GTCGCACCCG GCCGCGTTCA GCGCGTCGAG CTGGAGTGAG AGCTTCTGGT CTGCCGTCGA 600
GACGCGCGCA TAGCCGATCA ACGCCACATG CAGCCCAATC CTGTCCGTTT TCCCATCATT ATCTGATCTT GTCCGAATCG CCGTTATAGG TCCAGAGTTA 700
ACGGACATAT TCCTGCTGGC CGCCAGAGGA CCGTCTGACG GACAAGGACG CGGAAGGAGA TAGTGCTTGG CGAGACGGCG ACTGGTGAGC GCGGAAATCT 800
GGGCAGGGCA TTATGGCGCG CCGCTCGATG AGCGCGAGAT TGCGCGGCAC TATACGCTGA CCGGTGACGA CCTGGAAATT GTCGGCCGCC GTCGCGGCGA 900
TGCCACCCGG CTCGGCTACG CGATGCTCCT ACTCTATATG AGATGGCCTG GCCGTGCGCT GGAAGCGGGT GAAGTCCCGC CCGCTCCTGT GCTCGCCTAT 1000
GTGGCGCAGC AACTCGGCGT CGCGCCCGAA GCCTTCGCGG ACTATGCCCA TCGGGACCAG ACCCGTCGCG AACATCTCGT TGAAATCCGA CGATCGCACG 1100
GGTTCAGGAT TTTCGACCGC AAGGCTTTCC ACGAAGTTGT CGCATTCTCG ATCCCGATCG CACAGACCAT CGTCCACCCC GGCCAGATGG CGGGGGTCAT 1200
CGTTGACGAA CTTCGGCGCC GGCAGATCCT CCTGCCTTCT TCATCGGTTC TCGAAGCGGT ACTCCGGCGT GCTCGCCAGC AGGCCGAACA GCTTACCTAT 1300
GAAGTGCTCA CGAACGGCCT GCGGCCCGAT ACGCTGCAGG GGCTGGACGA TCTGCTGGCC CGACGAACAG GGCAAGCCGC GACATGGCTA TCCTGGCTGC 1400
GCAATGCACC ACAGTCGCCG GCAGCGCGCA ACATCCTACG CCTGATCGAA CGGCTCACTC ATATCCGCGC GCTGGATCTC GATCGCGCCC GTGCCGACAT 1500
GATCCCGGCT TTGACTTTTG ACAGGCTGGC GGACGAAGGC AGCCGGATCA CACCCCAGCA CCTTGGCGAA CTCAATGCCC TGCGCCGCCA TGCGACGCTG 1600
GCGGCGCAGG GCATCCGTCT TGAGGAAAGC CTGACCGATG CCACCCTGAC GATGTTCGAC AAGCTGTTGG GCAGCATGTC GCGTCGCGCC GAGAACCGGA 1700
CCCGTGACAA AGCCCTCAAG ACGGTGCGCG AGTTGCAAGG CCATCTCCGG ACGCTCACAG GGTCTTGCCG CATTCTCATC GAAGCGCGCA CCAACGGTGT 1800
GGACTCTCTG GCGCAGATCG AGGCGCTGGA TTGGCAGCGC TTCGCCGTGG CGGTCGCGCG GGCCGAAGTA CTCGGGCGAC CGGAAACCGT CGATCGCACC 1900
GCTGAATTGA TCGAGCGGCA TCGCACGGTG AAGCTCTTTG CCGGTGCCTT TCTCAACACC TTCGAATTTC GCGGCGCCGG TGCGGTGCAG GGACTCCTGT 2000
CGGCGCTTAC CATCATCGCG GAGCTATACC GGACCGGCAA ACGGCGCTTG CCTGATCGCG TGCCGCTGCG CTTTGTGCCC TCCGCATGGC GGCCGTTCGT 2100
CCTGCGGGAC GGCATCGTCG ATCGCGCCGC CTATGAACTA TGCGCCTTGT CCCAGCTACG GGAGCGGTTG CGAGCGGGAG ACATATGGGT CTCGGGAAGC 2200
CGCCAGTTCC GCGATTTCGA TAGCTACCTC ATCCCGCCGG CCACCTTCGA CGCGCTTCGC GAGAAGGGGC CGTTGCCGCT CGCCATCGAA ACGGACTTCG 2300
ATCGTCATAT CGAGGAAAGG CGCGCCAGGC TCGACACGGC GATCGAACAG GTGACGGTCC TCGCCCGACA GGGCGAGCTG CCCCAGGTCA GGCTTGACGA 2400
AAGCGGCCTT ATCATCTCGC CGCTGAAAGC GGCAACGCCA CCCGCCACCG AGATTGCCCG TCGCGCTGCC TATGACCGAC TGCCGCGCGT GAAGATCACC 2500
GATCTCCTGC TTGAGGTCGA TGCCTGGACC GGGTTCAGCG AATGCTTCAT CCATCGGCGT TCGGGCCGGG AGGCCGACGA CCGCAATGCG CTGCTCACCG 2600
TCATCCTTGC CGATGGCATC AATCTCGGCC TCACACGCAT GGCGGAAACC TGCCGAGGCG CAAGCCTGCG CCAGCTCGCC CATCTCCACG ACTGGCACAT 2700
CAGCGAGGCC GCCTATGGTG AAGCGCTGGG AAGGCTGATC GACGCCCATC GCGCCATGCC GCTCGCCGCG CTGTGGGGAG ACGGCACCAC CTCGTCGAGC 2800
GACGGACAGC AATTCCATGC CGGGGGCCGT GGCGCCGCAA TCGGCGACAT CAACGCGCGC AGCGGCAACG AACCGGGCGT TGCCTTCTAC ACCCATGTCT 2900
CGGATCGATA TGACCCCTTC GCGACCCGGG TAATCGCGGC GACCGCCGGC GAAGCTCCCT ATGTGCTGGA TGGCTTGCTG TATCAGCAGA CCGGCCTGAC 3000
AATCGAGGAG CACTACACCG ATACAGGCGG TGCATCGGAC CATGTGTTCG GCCTTATGCC CTTCTTCGGC TACCGCTTCG CGCCGCGCCT GCGCGACATC 3100
AAGCAGCGTC GTTTGCACCT CCTTCCCGGC CAGGAAGCCG GCCCCTTGCT TGCCGGCATG ACGGCCGAAC CGATCGCATT GGGTCATGTC GCGGCGCATT 3200
GGGATGAACT GCTGCGGTTC GCCACATCGA TACGCACCGG CACCGCCACC GCTTCGGCGA TGCTTCGCCG CCTGTCCGCC TATCCGCGAC AGAACGGACT 3300
GGCCCTCGCG ATGCGCGAGC TGGGCCGCCT CGAACGCTCG ATCTTCATGC TCGACTGGCT GCGCGACATT GATCTGCGCC GGCGTACCCA GGCGGGCCTC 3400
AACAAGGGCG AGGCCCGCAA CGCGCTCGCA CGCGCGCTCT TCTTCAACCA GCTCGGCGAA TTGCGTGATC GGCGGTTCGA GAACCAGACC TATCGCGCCT 3500
CCGGCCTCAA CCTGCTCGTC GCCGCCATCA TCCTGTGGAA CACCCGCTAT CTCGAAGTGG CGCTGGCTGA TATCGGCACG CCCGACGAAA TCGCACGTCA 3600
CGTCGCGCCA TTGGGCTGGG AACATATCTC GCTCACCGGC GACTATAGCT GGAATGTTGA AGATCGGCCC GATCCGGATG TCCTGCGGCC ACTGCGCGCC 3700
ATCAGTTCGT TGCTCGCCGC GTAACGTTCA CCATACGTTC GCGCTTAGCG TGCGGATGCG TCACTTTCGT GTAGTCACCC C
|
|
|
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnpR |
Tn6137 |
34-627 |
Accessory Gene |
Resolvase |
- |
| tnpA |
Tn6137 |
767-3724 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn6137 |
594 |
34-627 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | recombinaseactivity (GO:0000150) |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MALIGYARVS TADQKLSLQL DALNAAGCDR IFDDHASGAK ADRPGLAEAL AYLRSGDTLV VWKLDRLGRS MSHLIEKVGE LATRGIGFRS LTENIDTTTS
GGMLVFNIFG SLAQFERDLI RERTHAGLKA ARERGRPGGR RPVVTPDKLR KAREHIASGL TVREAAARLK IGKTALYKAL EATEKNTKSQ RSRSVRS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn6137 |
2958 |
767-3724 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MARRRLVSAE IWAGHYGAPL DEREIARHYT LTGDDLEIVG RRRGDATRLG YAMLLLYMRW PGRALEAGEV PPAPVLAYVA QQLGVAPEAF ADYAHRDQTR
REHLVEIRRS HGFRIFDRKA FHEVVAFSIP IAQTIVHPGQ MAGVIVDELR RRQILLPSSS VLEAVLRRAR QQAEQLTYEV LTNGLRPDTL QGLDDLLARR
TGQAATWLSW LRNAPQSPAA RNILRLIERL THIRALDLDR ARADMIPALT FDRLADEGSR ITPQHLGELN ALRRHATLAA QGIRLEESLT DATLTMFDKL
LGSMSRRAEN RTRDKALKTV RELQGHLRTL TGSCRILIEA RTNGVDSLAQ IEALDWQRFA VAVARAEVLG RPETVDRTAE LIERHRTVKL FAGAFLNTFE
FRGAGAVQGL LSALTIIAEL YRTGKRRLPD RVPLRFVPSA WRPFVLRDGI VDRAAYELCA LSQLRERLRA GDIWVSGSRQ FRDFDSYLIP PATFDALREK
GPLPLAIETD FDRHIEERRA RLDTAIEQVT VLARQGELPQ VRLDESGLII SPLKAATPPA TEIARRAAYD RLPRVKITDL LLEVDAWTGF SECFIHRRSG
READDRNALL TVILADGINL GLTRMAETCR GASLRQLAHL HDWHISEAAY GEALGRLIDA HRAMPLAALW GDGTTSSSDG QQFHAGGRGA AIGDINARSG
NEPGVAFYTH VSDRYDPFAT RVIAATAGEA PYVLDGLLYQ QTGLTIEEHY TDTGGASDHV FGLMPFFGYR FAPRLRDIKQ RRLHLLPGQE AGPLLAGMTA
EPIALGHVAA HWDELLRFAT SIRTGTATAS AMLRRLSAYP RQNGLALAMR ELGRLERSIF MLDWLRDIDL RRRTQAGLNK GEARNALARA LFFNQLGELR
DRRFENQTYR ASGLNLLVAA IILWNTRYLE VALADIGTPD EIARHVAPLG WEHISLTGDY SWNVEDRPDP DVLRPLRAIS SLLAA
|
|
| References |
|
|
Nagata Y, Natsui S, Endo R, Ohtsubo Y, Ichikawa N, Ankai A, Oguchi A, Fukui S, Fujita N, Tsuda M. Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium. Enzyme Microb Technol. 2011 Dec 10;49(6-7):499-508. doi: 10.1016/j.enzmictec.2011.10.005. Epub 2011 Nov 7. PubMed ID: 22142724
| |
| | |
|
|
