Transposon
Name: Tn6122
Family: Tn3        Group: Tn163
Evidence of Transposition: no
 Host     

Host Organism:Paracoccus halophilus JCM 14014 Molecular Source:plasmid pHAL1
Place of Origin:South China Sea 2008, China Date of Isolation:2012
Other Geographic Information:marine sediment

 Map     



 Terminal Inverted Repeats (IR)     

IRL (Length: 39 bp)GGGGTGGATTCCGGTAGGGGGCAGGATCGTATCACAAGG
IRR (Length: 39 bp)GGGGTGGATTCCGGTAGGGGGCAGGATCGTATCACAAGG

 Sequence     
DNA SequenceLength  3792 
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTGGATT CCGGTAGGGG GCAGGATCGT ATCACAAGGA ACTCTGTCGC TGCCGCTTCA TAATATCGAG CACAGTATTT TTGCTGATCC CAAGGTCGCG 100
GGCGATCCAT CGGTATGATC GACCGTCTTC CACGGCTTGA ATGACCTTTG GCGCGAGCTT GTCGGATTTT GGGCGTTGTC CTGGCTGGCG ACCGAGCTTC 200
TTTCCTCGCG CCCTTGCGGC GGCGAGCCCG GATTTCACCC TTTCGCTGAG CAGATCGCGT TCAAACTGAG CAATCCCGGC CAGCATGGTG GCCATCATTC 300
GACCATGTGG CGTCTCTACT TCGAAGGTCA TGCCGCTCAT GGCTACAACG GAGACTTTCC AGCCGGCGAG CCTGTTCAGG GTATCCAGCA GGTCCTGAGT 400
GGACCGCCCC CACCGAGAAA GTTCGCTGAC CAGGATGGCG TCGATTTGTC GTGCCTGCGC CAGGTCGAGT ACCCGGTTGC GCGCAACGCG ATTGTCGGAC 500
GCGCCAGAGG CTTTTTCCTT GAACACTCCC ACCACGTCAT ACCCGCCGCG CTCGGCGAAC GCGGTGAGCT CCGTGACCTG CCGCTCGCAG GACTGGTCGG 600
ACGTGGAAAC CCGGGCATAG ATAGCGGCGC GCTGTCCCAT TTGAACCCCC TTTGAATCGG GCCTTGCAAG TCGTTGGTTT TGCTGGTGCG GGAATTGTCC 700
TGAACAGACT AATGACTAAC AAGGACAAAC TCGTATGCCA AGACGCTCTA TCCTGACCGC GCGCCAGCGC GCGGCGCTGT TCGATCTGCC GACAGACGAA 800
GCCACCATCC TCTACCACTA CACACTGGCG GACGATGACC TCGAATTCAT TCGAACCCGT CGCCATGCAC GCAATCGCCT CGGCTTCGCC CTTCAGCTTT 900
GTGCTTTCCG ATATCCTGGC CGACTGTTGG CGTCGGGTGA GGTCATTCCA GAGGCCATCA GCAGCTTCAT CGCAGCACAG CTTGGCGAAG AGATGGATGA 1000
GCTTTGCCGA TACGCCGAGA CCGACGTAAC GCGGCGCAGG CATTTGGTCG ACTTGCGCCA GCTCTATGGC TTCAAGATGT TCTCCGGGCA TCGCGCGCGG 1100
GAACTGAAGG CCTGGCTGGC AGGCGAGGCG GAGGTGGCAA CCTCCAACCA TGATCTGGCC CGCCGGTTTG TCGAAGAGTG TCGCCGGACC CAGACGATCT 1200
TGCCGGGTGT GTCCGTGATC GAGCGCCTCT GCGCGGATGC ACTCGTGGCG GCGGAACGCC GGATCGAAAG CGCCATCGTG AACCGGCTGG ATGAGGATAG 1300
AAAGGCCCGC CTGGACACCC TGCTCACGGA GATGGTCGAT GGCACGGTCA GCCGGTTCGT CTGGCTGCGC CAATTCGAGG TTGGTCAGAA CTCGGCCGAT 1400
GTTGGCCGCC TCCTCGATCG GCTGGAGGTT CTGCGGGATC TGAACATCTC GCTAGATATC CTCGCGGGCA TTCCACCCCA TCGGGTGACC GGCCTGCGGC 1500
GTCAGGGCGA ACGCTACTTT GCCGATGGTC TGCGTGACAT CAGCAGCGAC CGCCGCCTGG CCATTCTCGC GGTTTGCGCC GTCGAGTGGT GTGCCGCGAT 1600
TTCCGACGCG GTGGTCGAGA CCCATGACCG GATCGTCGGC AAGACCTGGC AGGGCGCGAA GAGGCTGTGC GACGCCAAAA TCGCCGACGC AAAGGCGGCG 1700
GTGCAGGACA CCCTGCGCGC CTTCAAATCT CTCGGGTCGG CCCTGCTGGA CGCCAGAAGC GATGGGTCTT CCTTGGATCA GGCGACAGAG CTGGCTTGCG 1800
GGTGGGGTCG GCTCGAAGGG CTGGTCGCCA CCGCCGCCGA GTTGACGCAC ACGATGGCCG CAGACCCATT GACCCATGTT GGCCAAGGTT ATCTTCGGTT 1900
CCGGCGCTAT GCCCCGCGCA TGCTGCGCGT TCTCGATATC GAGGCGGCGG GTATCGCAGC TCCCTTGCTG CAGGCGACCG CGCTGATCGC AGACGATGAA 2000
AAGCCCGAAA CCCGCCCAGT TGGCTTTCTG CGGCGCGGCT CGAAATGGCA CCGCCATCTG AACGCTGCCG CCGGTGACGG CCATCGGCTC TGGGAGGTTG 2100
CGGTGCTGTT TCATTTGCGG GAGGCGTTCC GGTCGGGTGA CATCTGGCTC CTCCATTCCC GGCGCTACGC TGATCTGAAG CAGGCCCTGG TTCCTGCGGA 2200
GGCGGTAGAG GGCGCGCCAA GGCTGACGGT GCCGCTCGAC CCGGAAACCT GGCTTGCCGA TCGCAAGGCG CGCATGACCG ACGGGCTGGC GCGACTGGCC 2300
AAGGCGGCTC GCGCAGGGGC GATCCCGGGC GGGTCGATCG AGAATGGCGT CTTGAAAACT GACCGCCTGA GTGCGGCGGT GCCGCAAGAG GCGGACGAGC 2400
TGGTGCTCGA TCTCTACGAC CGGTTGCCGA CCATACGGAT CACCGAACTG CTGCAGGAGG TCGATGCAGA TATTGGCTTC ACGGAAGCCT TCACACATCT 2500
GCAGACCGGC GCGCCCTGCA AAGACCAGAT CGGGATGCTG ACCGTGCTGT TGGCTGAAGG TTTGAATCTT GGGCTCAGCA AGATGGCCGA AGCGACCAGC 2600
ACACATGACT ACTTCCAACT CTCCCGCTTG TCGCGATGGC ATATGGAGAG CGATGCCATC AACCAGGCCC TCGCCTTGGT AATTGAGGCA CAGGCCCGGC 2700
TGCCCATGGC CCAATTCTGG GGCGGGGGCG TCACCGCGTC CAGTGACGGG CAATTCTTCC CCGCCGCCCG GCAGGGCGAA GCCATGAACC TCATCAACGC 2800
GAAATACGGC TCCGAGCCAG GCCTCAAGGC CTATACCCAT GTCTCCGACC AGTTCGGCCC CTTTGCCACC CAGAACATTC CGGCCACCGT GAGCGAGGCG 2900
CCCTACATTC TGGACGGGCT GCTGATGAAC GAGGCCGGAC AAAAGATCTC GGAGCAGTAT GCCGACACCG GTGGCTTTAC AGACCAGGTC TTTGCCGTGA 3000
CCGCGCTGCT GTCCTACCGG TTCATTCCGC GCATCCGGGA TCTGCCGTCA ACGCGGCTCT ATCTCTTCGA TCCCGCCACC GCGCCGAACG AGTTGCGCGG 3100
CTTGATCGGC AGCAAGATCC GCGAAGGCGT CATCGTCCAG AACTGGCCTG GCGTCCTGCG TGCCGTGGCC ACCATGGCGA CGGGCGTCCT GCCGCCCAGT 3200
CAGTTGCTCA AAAAGTTCGC CGCCTATCCG CGCCAGCACG AGCTGGCCGT GGCGCTCCGC GAAATCGGCC GCATCGAACG CACCCTCTTC ATCATCGAGT 3300
GGCTACTCGA CGCCGACATG CAGCGCCGGG CCCAGATCGG CTTGAACAAG GGCGAGGCCC ATCACGCCCT GAAAAACGCC CTGCGCATCG GGCGACAGGG 3400
CGAAATCCGT GATCGCACCG CCGAGGGGCA GCACTACCGC ATGGCCGGCC TCAACCTGCT CGCTGCCATC ATCATCTACT GGAACACCAA GCATCTCGGT 3500
CAGGCCGTCG CCGCGCGTCA GCGGGCCGGG TTGAATTGTG CGCCCAATTT ACTGGCGCAT ATCTCGCCGC TCGGCTGGGC ACACATCCTG CTCACTGGCG 3600
AATACCGGTG GCGGCGGCAA ACCGGGGCCA GCTTGTGAAG TAATCAGCCC TATTTCTTGC CACCGTCACG GCTCCCAAAC GGACGCACCG CGATCATCGC 3700
CACCACAAAG GCGGCACAGA GTTCAAAATG GAGGAAAGAA GGGGGTGTCA GGGCCTTGTG ATACGATCCT GCCCCCTACC GGAATCCACC CC

 Recombination Sites     

Name Coordinates Gene Sequence
res 641-734 94 TTGAACCCCC TTTGAATCGG GCCTTGCAAG TCGTTGGTTT TGCTGGTGCG GGAATTGTCC
TGAACAGACT AATGACTAAC AAGGACAAAC TCGT

 ORFs     
ORF Summary
Gene Name Associated TE Coordinates Class Sub Class Orientation
tnpR Tn6122 32-640 Accessory Gene Resolvase -
tnpA Tn6122 735-3638 Transposase   +

ORF Details
Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpR TnpR Tn6122 609 32-640 -
Class:   Accessory Gene
Sub Class:   Resolvase
Transpoase Chemistry:   Serine
Sequence Family:  Serine Site-Specific Recombinase
Protein Sequence:  
MGQRAAIYAR VSTSDQSCER QVTELTAFAE RGGYDVVGVF KEKASGASDN RVARNRVLDL AQARQIDAIL VSELSRWGRS TQDLLDTLNR LAGWKVSVVA
MSGMTFEVET PHGRMMATML AGIAQFERDL LSERVKSGLA AARARGKKLG RQPGQRPKSD KLAPKVIQAV EDGRSYRWIA RDLGISKNTV LDIMKRQRQS
SL

Gene Name Protein Name Associated TE Gene Length Coordinates Strand
tnpA TnpA Tn6122 2904 735-3638 +
Class:   Transposase
Transpoase Chemistry:   DDE
Protein Sequence:  
MPRRSILTAR QRAALFDLPT DEATILYHYT LADDDLEFIR TRRHARNRLG FALQLCAFRY PGRLLASGEV IPEAISSFIA AQLGEEMDEL CRYAETDVTR
RRHLVDLRQL YGFKMFSGHR ARELKAWLAG EAEVATSNHD LARRFVEECR RTQTILPGVS VIERLCADAL VAAERRIESA IVNRLDEDRK ARLDTLLTEM
VDGTVSRFVW LRQFEVGQNS ADVGRLLDRL EVLRDLNISL DILAGIPPHR VTGLRRQGER YFADGLRDIS SDRRLAILAV CAVEWCAAIS DAVVETHDRI
VGKTWQGAKR LCDAKIADAK AAVQDTLRAF KSLGSALLDA RSDGSSLDQA TELACGWGRL EGLVATAAEL THTMAADPLT HVGQGYLRFR RYAPRMLRVL
DIEAAGIAAP LLQATALIAD DEKPETRPVG FLRRGSKWHR HLNAAAGDGH RLWEVAVLFH LREAFRSGDI WLLHSRRYAD LKQALVPAEA VEGAPRLTVP
LDPETWLADR KARMTDGLAR LAKAARAGAI PGGSIENGVL KTDRLSAAVP QEADELVLDL YDRLPTIRIT ELLQEVDADI GFTEAFTHLQ TGAPCKDQIG
MLTVLLAEGL NLGLSKMAEA TSTHDYFQLS RLSRWHMESD AINQALALVI EAQARLPMAQ FWGGGVTASS DGQFFPAARQ GEAMNLINAK YGSEPGLKAY
THVSDQFGPF ATQNIPATVS EAPYILDGLL MNEAGQKISE QYADTGGFTD QVFAVTALLS YRFIPRIRDL PSTRLYLFDP ATAPNELRGL IGSKIREGVI
VQNWPGVLRA VATMATGVLP PSQLLKKFAA YPRQHELAVA LREIGRIERT LFIIEWLLDA DMQRRAQIGL NKGEAHHALK NALRIGRQGE IRDRTAEGQH
YRMAGLNLLA AIIIYWNTKH LGQAVAARQR AGLNCAPNLL AHISPLGWAH ILLTGEYRWR RQTGASL

 References     

Dziewit L, Baj J, Szuplewska M, Maj A, Tabin M, Czyzkowska A, Skrzypczyk G, Adamczuk M, Sitarek T, Stawinski P, Tudek A, Wanasz K, Wardal E, Piechucka E, Bartosik D. Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria). PLoS One. 2012;7(2):e32277. doi: 10.1371/journal.pone.0032277. Epub 2012 Feb 16. PubMed ID: 22359677