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Internal Transposable Elements | |
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Name: Tn5501.7 |
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Family: Tn3 Group: Tn3000 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | Acidovorax sp. T1 | Molecular Source: | plasmid p3-T1 |
Place of Origin: | Jiangsu Province, China | Date of Isolation: | 2017 |
| | Other Geographic Information: | soil from Zhenjiang Jiangsu Pesticide Chemical Co., Ltd. (32(o)10′23.27″N, 119(o)36′22.16″E) |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 38 bp) | | GGGGTTCTAAGCCGGAACCGCCGAAAATTCCGTCAGCC |
IRR (Length: 38 bp) | | GGGGTTCTAAGCCAGAACCGCCGAAATTTCCGTCATCC |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTCTAA GCCGGAACCG CCGAAAATTC CGTCAGCCGA TCAACGTGGC TTGTCCCGCG CCCGGTCGAT GGGGTAGACC CAACAGTCGT GTCACTAGCC 100
GCCATTTCGA TCACGGCAAT GCCAGCCGGA CGTCACGTCC AGATTGTTCC GGTCTGGATG AGGCCGACTG ACGTCTCGGA TGACGGGTGG CATACAACTG 200
CTGTGAGTCC TGCAGGGGGG CAGCTGCCTG ACCGGACGGC GAGCATCAGC CCATCTCATG TATTAGTCAT GTCAGCTTTG ACACTGCGCA CGCGACGGCA 300
CCCGACCCAA AGCAGTCAGT CAGGGCGCCG CCCCGAGCGG CGGCAATGCA GCGAGAGCTG CCGATCGCCA ATGGCAGCTT GCTGGTTGTC CAATCTCCCT 400
CCGGGTAGCA GTCGTTCGTG GCCGCCCTCA CGCGGTGCGC AGATTGAACT GGGGGAGCCC GCAGAATTCG GAAAAAATCG TACGCTAAGG TTTTCCGACC 500
TGCCGTAGCG GCCTGAATTT ACCGTCTTCC AGCTTGCGGC TCTGCCGCCA GACGTAATCG CCGGTCAGGT TAATGTGCTC CCAGCCCAGC GGCGAAAGGT 600
ATTGCAACAG GTCGGTGTTC ACCGGCTTTC CGGCGTCAGT CAGCCCCTGG GTTGCCCGCT CCAGGTAGAC TCCACAGCAC AATAGCGGCG GTGATCAGGT 700
TGAGGCCGCT GGCCCGGTAG CGCTGCTGCT CGAAGCTCCG ATCCCTGATT TCACTGAGGC GGTCGAAGAA CACCGCACTG GCCAGGGAGT TGCGCGCCTC 800
GCCCTTGTTC AACCCGGCAT GCACACGACG ACGCAACTCG ACACTTTGCA GCCAGTCCAG GATAAACAGC GTGCGTTCAA TCCGGCCCAG CTTCCGCAGG 900
GCCACGGCCA AGCCATTCTG GCGCGGATAG CTGCCCAGCT TACGCAACAT CAGCGAGGCG GTGACGGTGC CCTGCTTGAT CGATGCTGCC AGACGCAGAA 1000
TCTCGTCCCA GTGAGCGCGG ATGTGCTTGA TGGTGGGGTG CCTCCGATCA TTGGCCGCAG TGTCGGGTAG TCCTGGACAC TCTGTGGTAC ATACAGCTTG 1100
GTTTCGCAAG GGCGTTTGGT TGCGAATCAT GGCGTCACTC GCGGCTGACG CTGATCTGGA GCATCTGATG GTGGATGGCA GCATCGTGCG CGTTCATCAG 1200
CATGGCGCGG CAAAAAAACC GATCAGGACG TCGAAGCCAT GGGCAAATCC CGAGGGGGAC TGAGCACCAA GATTTACGCA GCCGTAGATG CCATGGGCAA 1300
TCCGGTGCGT CTGCTACTGA CGCCTGGTCA AGCCTCGAAA TACAGACAAG CCGAAGCGCT GATCGAGGGT TTTACCCCCG AGGCGGTATT GGCTGACAAA 1400
GGCTATGACT CTGACGCCTT CATTGGGCTA TCCAGCGCAG GGGCGCGGAA GCGGTCATCC CCTCGAAAAG AAATCGCCTG AAACCTCGCC AGCTGGATCG 1500
GCATCTCTAC AAGGCGCGCA ACTTGGTGGA GCGCTTTTTC CAGAAGCTGA AGCAGTTTCG CCGGATCGCA ACAAGGTATG AACGACTGGC AAGAAACTAT 1600
CAGTCGATGT TGAGCCTAGT GTCAGCCGTC ATATGGCTGG CCTGATTGAG AACACCACCT AGGCCAGCTG AAAGCGACCG TAAGACGCAA TTCCTCCAGC 1700
CCCCGCGTTT CGGTGCCGAA ATTGTCGCCC AGGTGCTGAG CGATCCCATG CTTTTTGCGT TGTGGTTACA AGAGGTAGAA GCAATACGTC TGCGGATTGC 1800
AAGTATGCGG CAGATGTAGG CAGCACTCCT GAGAGAAGCA TTGCCCGAAC GGAACTTCGA TTTTTTTGTT CAGCAGAAGG GCATGTTCAG CTTTACTGGC 1900
CTCTCCCATT CGCAAGTGGA ACGGTTGCGC GATGAGTTTG GTGTTTATCT CTTTGGCAGC GGTCGCATGT GTATGGCTGG GCTCAACGGG ACGAACTTGC 2000
CTTGCGTTGC TCATGCGTTG ATCGAGGTCT GGAAGGCGTG AAGCCTATTG TGATGCTGAT TACTCAGACT TGGTAATCCG CCCCAGCTTT TTGTACAACG 2100
TGGTCCTGGA GATACCGAGC TGGCTGGCGG TGGCAGAAAT GTTTCCAGCG TTGGCCTGCA GCGCTGATTC GACAGTACGG CGCACGGCGT CCTGCAAATC 2200
GCTCCCTCTC TCCTGCTCAC TTTCAGCTCG CATATCTGCT GGAAGGTGCT CCAGCAGTAT CATCGGTTGG TCACTGGCCA GCGCCGCCGC AAGGCGCAGT 2300
GTCTGTTCCA GTTGGCGAAT GTTGCCTGGC CAGACCTGGC GGTGCAGAGC CATTAATGCC TGGTGCTCCA GCGGTGGAGC GCCGTAGCGT TGGCGCAGGA 2400
GGTCGATCAA GGTGTTCAGA TCCTGACGTT CACGCAAGGC CGGCAAGCGG ATTTTCAGGC CATTGAGGCG GTAATAAAGG TCTTCACGAA AACTTTTATC 2500
AAGCATGCGT TGCTGCAGAT CGCAATGGGT GGCACTGATC ACCCGTACAT CCAGGGCTCG CCGTGTCGTG CTACCCAGAC GAGTGATCTC GCGCTCTTGG 2600
AGCACCCGCA ATAACCGGGT TTGCAGCGCC GCCGGCATAT CACCAATTTC GTCTAATAAC AGGGTTCCGC CATGTGCAGC TTCCAGTTGC CCGCTGGCCC 2700
CGCCTTTGCG CGCACCGGTG AAAGTGCCTT CCACATAACC GAAAAGCTCA GCCTCGATCA GGCTTTCCGG GATCGCCGAG CAGTTGATCG CAACGAAGGG 2800
AGCTTGGGCG TTCCATTGAT CATGTAAGGC TCGGGCGAAT ACCTCTTTAC CGGTGCCCGT TTCGCCCTGC AGCAAAATGG GGACGCCTGC AGCGAAGGCC 2900
TTGCGGGCGT TGTCCAACTG GCGATTGAGC TGAGGGTCGG CGCCCAGTAT GGACACGCAA AGGAGCGGGG AGCAGACGTG CAGCGCAGTT GATTCTCGAC 3000
GTTGCTCAAT CACCTGTGCA TACAACCGGG AACCGTCGCT GAGGGTCAAT TGTTGCTGTG CTCGGTGCAG ATCGATAGCG CTGCTTTCTT CGAACAGTTG 3100
ATCCAGGCGT TTGCCTATGG GGCGAAATTG TTCAAGTCCC AACAATCGCT GGGCAGCGCG ATTGGCATTT TGAATGCGTC CTGTCTGGTC AACTGCCAAG 3200
AGGCCCTGCA ATGGCGTACC CAACAGTCGT GGGTCATGCT GCAGCGACAG GATCCGGCAA TCGCCCAGCG TGGTAAAAAA GCGATTTTCG GCCGCCATCG 3300
CCGCGTGACT CAATTGTTCC AATACAGCAC CAGCCTGACG GTCACCGATC CCCGTGATGT CCAGCACGCC AATCACTTCA CCATGCAGGC CCCGGATGGG 3400
CACACTCACG CAAAAGAAAT GCTCGAAGTC ACTGAGGTAA TGCTGGTTGC CGATCAGTAC CATCGGAACA CCTTCGGCCA AGGTGCAGCT GGGTGCTGTG 3500
GTGCCAATGT CGGATTCCTG AATGCGACGT CCAATTTGCA ACGGCAGCAG TGGCCCGTCG AGCGTGCGTG CTTGGCGCGC GTGGACGATG ACCCCCCGCG 3600
TATTGACGCA GAAAATTGTC CATGAAGCAC CGCCGATTTG CTGCCAGAGT CGGTCGATTT CTGGTCGTAC ACACTCTGCA AGTTGCTGGT CTGACTCATC 3700
AAGCGGCAGC AGACTGTCGT CCTGTTCTGC CAGCCAGGAT TGCCAGGGCA ACAGGCCGGC TTCACGTGAT CGCGCCCAGG AGTGAGCGAT GGTGCTCGGC 3800
AGAAGATTGG AGGGCAGGGC GACACCTTCG ACGAAACGCT GGCGGGCAAT TACCAGACGT TGCTGATCGT GCAGGGTGTG GGCATCCATC GAGACACCTT 3900
TTTATTGGTT GGAGTCGTGC CGTTGACCGC TATAGGCTGG TCACGACACG CTTTGATGTA TACCTTCGTT AAACCAACGT CAAGATCAAA ACAGCAGCAG 4000
CGCCCTTAGG TTGACGCCTA TGTCCTCCTG AAAACCACCT ACCACATGGA TATCATGGGT TAGCTGCGCA CTGAGCTGCA CAGTACGACC GACCATTTGC 4100
TGGAATTCAG CGCGCACTTG CTGCACCTCG GTTTTTTGCC CGGTGTAATT ACCATCTAGA TACTGTTTGC CACCCGTGCT GGTGCTGTAG CCCAGAGCCA 4200
CGCGTTGGGC CGGATTGAAG TCATAGCGCA AGTTGCCTTG TAGCTGATAG GTCGCGTCTT GTTTGAGCGT CTGGTTGCCG GTGCCAGCAT CATCATTATG 4300
TCCATACACC ACGGCATCAC CGTACAGCTC CATGGATACC TTACCCCACA GTGGCTCAAC CCAGCCCAAC TGCAAATCGC CCTTAAAACG GTTCTCGCCA 4400
AGGTTCAGTG TGTCGTGTTT GTCATAGCTG CCCCACGGCA GGTATAGCAG AGGGGTAATT CCGAAGTAGC GGCCACTGGC CCCGGCGGCA GGCTGATTGA 4500
CCAGCCAGAA GGTAGCGCCG ATGATCGGGT CGGCCAGACC ACTGGCGCTA CCCAACGACT GGCCTGCGAT ACGCGCGTCG TACACATGGC CGAAGGGCAG 4600
GAGTATTTGC GGGTCGACGG TCATACCGCC GATGTCCATG AAGTGGATCA ATCGCAGGAT GCTGATATTC GATGTAAGTA TCCCCCGGCA AAGCCGGGGG 4700
CTTTAGTTTG TTAGCCCCTC AAAGGGGCCG CCAAGTGCGC CGCCTGAAGG CGGCCGTCAC ATGCCCAACT TCAGTTGGTC GTAATGCTCG TCTTCCTTCT 4800
CTTGGTGCCG GATGTAGGCC CGAACCATCT CCTCGTCCAG CCCGACCGTT GAAACAAAGT ACCCTCTGGC CCAGAAATTC TCACCCCCGA AGTTCCGGCT 4900
CCGCCCATTG AACCGACGCG CAATCAAGAT CGCGCTCTTC CCCTTGATGT AACCCACCAC GTTTGCCACC GAGTATTTCG GTGGAATGCT GATACACATG 5000
TGAATGTGGT CGCTCATCAG GTGTCCTTCC AGAATCCTGC ACTCCTTCTG ACCAGCCAAC TCATGCAGCA CCTCACCGAG GTGCTTGCGA ATCGCACCGA 5100
AGATCAGTTT CTTCCTCTTC TTCGGGATGA ACACCACGTG ATACTTGCAG TCCCATTTGG TGTGACTCAG GCTCTGATAA TCTTGCATCG GAAACTCCTA 5200
TCTCTTGGTC GAGACAGAAG CTTCTAGGTC ACCGTGTCAC ACGGTCAAAC CTCGTGAGTC CCCCGGCAAA GCCGGGGGAT TACCGGGTTT ATTTACAGTG 5300
GGTAGGCCGG TGCTTCACCC TTGACGGTGA GCCATTGCCA TTGCGTGAAT TCTTCCCAGT TGGCAGCGCC GCCGATGCTG GTGCCATTGC CTGATGCGCC 5400
CACACCGCCG AACGGATTGA TGACCTCGTC GTTAACCGTC TGGTCATTGA TGTGCAGCAG GCCTACACGC AGTTGCTCAC CGAGCTTGAG TGCGCGACCA 5500
ACATCCCGGG ACAGTACGGC AGCAGACAAG CCGTATGCCG TATCGTTGGC CAGAGCAACG GCCTCTTCGT CGGTATCGAA AGGCACAACT ACGGCCACAG 5600
GGCCAAAAAT TTCTTCGTTG AAGGCCGGAT TGTCGCGGGT AACGCCTCCG AGCACGGTCG GTTCGAAAAA CAGCCCTTCA TAACCACCAC CTGCTTCCAG 5700
CGTCGCACCG GCTTGTTGCG CGGCTTGCAC TACGCGGTGA GCGTGATCAC GCTGCTGGGC GTTGATCAGC GGGCCCAGGT GTACTTCGCT GGTGGCTGGG 5800
TCGCCGACCG TCAGGCTCTT GGCCTTGGCC ACTAGGCGCT CAAGGAAGCG GTCATAGATT GCACGTTGTA CCAGCAGGCG ACCTGTGGAC ATGCAAATTT 5900
GTCCCTGGTG CAGGTAAACG CCCCACGTGG CGTTGGCCAG GGCCAAGTCG AGATCGGCGT CATCAAGCAC GATCAATGAG TTTTTACCGC CCAGTTCCAA 6000
CGAAACTTTT TTCAAATGAC GACCTGCAGC TTCACCAACC TTGCGCCCGG CACCGGTCGA ACCGGTGAAC TGGATCATCG CCACATGCGG ATCACTGGTC 6100
AGCGCAGCAC CCGCATCGAC ACCGCCAGGC AAAACGTGCA GCAAGCCAGC AGGCAACCCC GCCAGTTCGA ACAACCGGGC AATCACGAAA CCGCCACATA 6200
CCGCCGTGCG TGGATCTGGT TTGAGTACGA CGGCGTTACC TGTTGCCAGC GCCGGAGCAA CCGCCCGAAT GGCCAGATAC AGCGGGAAGT TGAAGGGCGA 6300
GATCACTCCC ACCACACCCA GTGGACGGCG GCGAGCAAGG CTCAGACGGC CAGGTACCGA AGGCAACACT TCACCTTGAC TACGCGAGGG CAGACCAGCG 6400
CTTTCGTGCA GGACTTTGAT GCTGATACTG GTTTCGAATG CGGCCTTGGC ACGGGTCGAA CCGCTTTCAC GCACCAGCCA GTCGACGATG GCCTCGAAGT 6500
GTTGTTCGGC GATTTTCGCG GCTTTACGGA ACAACGCCGC GCGCTCGTCG TAAGGCTGCT GGTGCCAAGA GGTCTGTGCG GCGCTGGCGG TTTTGGCCGA 6600
AGCAGCCACT CGCGCGGCAT CGGCATTGGC GACGTAGCCC AAGAGGTTGC CGGTGGCGGG TTCGAGTACT TGCGTGGCTG CGATGGGGCC AGCCTCCCAA 6700
GTCCCGGTGA ACAGGCGATC GTTCCAGAGT TCGGCAGGTA AAAAAATGGC AGGCAAGGAC GTGCTACTCA TCGGGTATAT CCCTCTTTTT TTGATCTTGT 6800
GATTTGGGGG CCAGCCGTCA TTGGCTGCGA TGAAAAACAT ATAGCAGAGG TCGTGCCAGC TTTCTGGTAG CTACAGACAG TGGTATTTAC AGTGTTCTTC 6900
GCTGTGTTCG AAGTGGAGTT GTTCAGTTAC TGGACAATGC GTGGGGTGGA CGGTGGTCAG TATCTGGACA TTGTGATGCA AGAGACGGAG ACGCAGTCAT 7000
GACCCCCTGC GCTTCCAGCT CGGCGATGCG CGCTTGAAGC TGCTCGGGGG GGGCTCGGTA TTGGTCATGT CGTGGGGGTT CCTTTCTGTT CATTTCGTTA 7100
GTGGCGGGTC TGATAGGGAA GCGTCGCTTG CACCTTCAAC CCAAGCCCCT CCTGCAATCC CCAAGATAAA GCTAGATGAT GGGGTTTGGG GAGCAACGGA 7200
ACCAACCAAC GTAAGGCTTA GTTAGAGTCG CCGTTGCCGA AAACAAAGTC TGGATAACCT GACAGAGCGC TTAGCGTACA AAAATTTCCG TTTTCTCTAT 7300
TCGCCCCAAC TGGAAGTTGA GGGGATTTCC CTGGCCGCGC GTCCTTCCCC ACCAGGCATC CCCGACACCC AGCCCACCCG CGCCCGGAGG CCTCAAGTGA 7400
TGCCGGGGCT GGTCGTTGCG CGCTGGAGTA GCTGGAGGGC CAAGGCCTGG AGTTGCTCGA CCTCGTTCGC GGCCAGCTCG CCGAAGAGGT GATGGGCGAG 7500
CTCGGTCTCG ATGGCCATGA AACGTTGCAC CTCGCTGGCA CCAGCGGCCG TCACGCTCAT GCGCAGGAGC CGACCGTCCC GGGTGACCGC TTTGGAGGAG 7600
GCCGTTCCAA AAGAAGTATG TCTGGAGCCA GTCTGAAGCC GTTACACGAC TGCGCGGCCT GGCCGTCCGC TTCTGGCCGC CTGCCGCCGA CCGCGGTCTG 7700
GCTCGAAAGC AGTCTGTCAA CGCGCCGTTT CATTGTTGCC ATGATCATAT CTTAATCGCG CACAGGCGGC CACAGGCGGG CAGTATGAAC CAGCGTCAGT 7800
ATCCACACCG TTTCGCCGTC GATCTGATAC ACCAGGCGAT AGCTTTCGTG CGGGATCAAC TCGCGGGTCC CGGGAATCTT TCCCGGCTTG CCCAGCATGG 7900
GGTGCTGGAT CAAGCGGGCG GCCGCGTCGC TGAAAATCTC ATCCATCCGG GCCGCCGCGC GCGGATTGTC GGCTGCGATG TAGTCCCACA CATCGGCACG 8000
GTCTTGCTGC GCTTCGGGCG TCCAAACAAC CCTCACGCCT GGCTCGCCAC ACTGGCACGC CGTGCGGCGA ATTCGGCCTC AACTTCATCG TTCGACCGCC 8100
CCAATCCAGC GCGCATCGAA GCCCGGCCGG CTTCGACCTT GCGGCGCAGG AACTCGTCGT ACTCGCGCGA CTCGCGCTGG CGCTGAACGA ACTCGCGCAT 8200
CAGCTCGCGC AGCACTTGCG ACGCCGGGCG ATGGGCCGCC TCGGCTTCGG CCATAAACTC GGCGCGCAAC TCAGGCTCCA GCTTCATCGT GAAAACGGCT 8300
TGTTTTGACA TGATCGGGGC CTCCTGCCAC TTGATACTAA CAAAGTATAT ACGCCGTCAT TACTAAGCGC TATTCACAGA ACGCTGCAAG GCGGGCGTGC 8400
GCTAGGCCAA GGCCTGTCGG AAAACATTTG TTTTTCGACA GGCCTTCAAC GGTCCTCTGC ACCAACCTCC GAGTGGCCGC AAAATTGTGC GGAAAACTCT 8500
GTCGCCAGAC GCTACCATAC GGAAACCTCG TCTTAATGGT TTTCCGCTTA TGTTGGTAGG TTACATGCGC GTGTCGTCGG ACTCCGACCG CCAGAGCACG 8600
AACTTGCAGC GCGATGCGCT GCTCGCCGTC GGCGTCGATG CGCGGCATCT GTTCGAGGAT CATGCTTCCG GCGCGAAGGA CGACCGCGCG GGCCTGGCGC 8700
GGGCGCTCGA ATTCGTTCGC CCTGGCGACG TGTTGGTCGT GTGGAAGCTC GACCGGCTCG GCCGTTCGTT GTCGCACTTG CTCGCCATCG TGACCTCGCT 8800
CAAGAAAAAG CAGGTGGCGT TCCGCTCGCT GACGGAGAAC CTGGATACCA CGACGCCCTC GGGCGAGTTT CTGTTCCAGG TGTTCGGCGC GCTCGCGCAG 8900
TACGAACGCG CCTTGATCCA GGAACGTGTC GTCGCCGGTC TGGCTGCCGC CCGCAAACGC GGCCGGATCG GCGGCCGGCC GCAGGCGATC ACCGGCGAGA 9000
AGCTGGAGGC CATCGTCGCT GCGCTCGATG GCGGCATGTC CAAGGCGGCG GTGTGCCGCA ACTTCGGCGT CAAGCGAACC ACGCTGATCG AGACCCTGGC 9100
ACGGGTTGGT TGGACGGGCT CTCGTGGAGC GTCATCGCGA TGACGACCAA GAGCGAACGA TTGACCGTCC TGTCGGACGC CGAGCAGGAA GCCCTGTACG 9200
GCCTGCCGGA CTTCGACGAC GCCCAGCGGC TGGAATACTT GGCGTTGACT GAAACCGAAC TGGCGCTCGC CAGCAGCCGG CCTGGTCTCC ATGCCCAGGT 9300
CTATTGCATC TTGCAGATCG GTTACTTCAA GGCCAAGCAT GCCTTCTTCC GCTTCGACTG GAGTGAGGTC GAGCACGATT GCGCCTTCGT GCTGAGCCGC 9400
TACTTCCACG GCGAGTCCTT CGAGCACAAG CCAATCTCCA AGCACGAGCA CTACACCCAG CGCGAGTGGA TTGCCGATCT GTTCGGCTAC CGGCCGTGGG 9500
CGGCCGAGTT CCTGGCGCAG CTCGCGCAGC AGGCCGCGCA GACCGTGCGG CGCGACGTGA TGCCGGGGTT CATCGCCGCC GAGCTGATCG TCTGGCTAAA 9600
CGAGCACAAG ATCATCCGGC CCGGCTATAC CACCCTGCAA GAGCTGGTGA GCGAAGCCCT GTCCGCCGAG CGTCGGCGGC TGGCTGGCCT GCTGTCGGAA 9700
GTGTTGGACG AATCGGCCAA GGCCGCGCTG GGTCGGCTTC TAGTGCGTGA CGACACCCTG TCGCAATTGG CGGCGCTCAA GCAGGACGCC AAGGACTTTG 9800
GCTGGCGTCA GATGGCCCGC GAACGCGAAA AGCGCGCCAC GCTGGAGCCG CTGCACCGGA TCGCCAAGGC GCTGCTGCCC AAGCTCGGCG TCTCGCAGCA 9900
GAATCTGCTG TACTACGCCA GCCTGGCGAA CTTCTACACC GTCCACGATC TACGCAACCT GAAGGCCGAT CAGACCTACC TCTACCTGCT TTGCTATGCC 10000
TGGGTGCGCT ACCGGCAGCT TTCCGACAAC CTGGTCGATG CGATGGCCTA CCACATGAAG CAGTTGGAGG ACGAAAGCAG TGCGGGCGCA AAGCAATCCT 10100
TTGTCGCCGA GCAGGTGCGC CGTCAGCAAG ACACACCGCA GGTCGGCCGC CTGCTGTCGC TTTACATCGA CGACAGCGTG CCCGATCCCA CGCCGTTCGG 10200
CGATGTGCGC CAGCGCGCCT ACAAAATCAT GCCCCGCGAT ACGCTGCAAA CCACCGCGCA GCGCATGAGC GTGAAGCCGG TGAGCAAGCT GGCTTTGCAC 10300
TGGCAGGCGG TGGACGGCCT GGCTGAGCGC ATCCGCCGCC ATCTTCGGCC GCTGTATGTC GCGCTCGACC TCGCTGGCAC TGATCCGGGC AGCCCGTGGC 10400
TCGTGGCGCT GGCCTGGGCC AAGGACGTGT TCGCCAAACA GCAGCGCCTA TCGCAACGGC CGCTCGCCGA ATGTCCAGCG GCCACGCTGC CGAAACGCTT 10500
GCGACCGTAC CTGCTGACCT TCGATGCCGA TGGCAAGCCG ACGGACCTGC ATGCCGACCG CTACGAGTTC TGGCTGTACC GCCAGGTCAG GAAGCGCTTC 10600
CAGTCGGGTG AACTCTACCT CGACGACAGC TTGCAGCACC GGCATTTTTC CGACGAGCTG GTTTCGCTGG ATGAGAAGGC CGCCGTGCTG GCGCAGATCG 10700
ACATCCCGTT CCTGCGGCAG CCACTCGATG CCCAGCTCGA TGCGCTCGCG ACCGAGCTGC GCGCTCAGTG GCTGGCCTTC AACCGCGAGC TGAAGCAGGG 10800
CAAGCTGACG CACCTAGAAT ACGACAAGGA CACGCAGAAG CTGACATGGC GCAAGCCCAA GGGCGAGAAC CAGAAGGCGC GCGAGAAGGC GTTCTACGAG 10900
CAACTGCCGT TCTGCGACGT GGCCGACGTG TTCCGCTTCG TCAACGGCCA GTGCCAGTTC CTGTCGGCGC TGACGCCTTT GCAGCCGCGC TATGCGAAGA 11000
AGGTCGCCGA CGCCGACAGC CTGATGGCGG TCATCATCGC GCAGGCGATG AACCACGGCA ACCAGGTCAT GGCACGCACC AGCGACATCC CGTACCACGT 11100
GCTGGAGAGC GCCTACCAAC AGTACCTGCG CCACGCAACG CTGCACGCGG CCAACGACTG CATCAGCAAC GCCATCGCCG CGCTGCCGAT CTTCCCGTAC 11200
TACTCGTTCG ACCTCGATGC ACTGTACGGT GCCGTCGATG GTCAGAAATT CGGCGTCGAG CGGCCGACCG TGAAAGCGCG CCACTCGCGC AAATACTTTG 11300
GGCGCGGCAA GGGCGTGGTC GCCTACACGC TGCTGTGCAA CCACGTGCCG CTCAACGGCT ACCTGATCGG CGCGCACGAT TACGAGGCCC ATCACGTGTT 11400
CGACATCTGG TATCGCAACA CGTCGGACAT CGTGCCGACC GCGATCACCG GCGACATGCA CAGCGTCAAC AAGGCCAACT TCGCTATCCT GCACTGGTTC 11500
GGCCTGCGTT TCGAGCCGCG CTTCACCGAC CTTGGCGATC AGTTGAAGGA ACTCTACAGT GCCGACGATC CGGCGCTGTA CGATCAGTGC CTGATCCGGC 11600
CGGCCGGGAG AATCGACCGC GATCTCATAG TCAGCGAGAA GCCGAACCTC GACCAGATTG TCGCCACGCT CGGACTGAAG GAGATGACGC AGGGCACGCT 11700
GATCCGCAAG CTATGCACCT ACACCGCGCC GAACCCCACG CGGCGCGCGG TGTTCGAGTT CGACAAGCTC ATCCGCAGCA TCTACACGCT GCGCTACCTG 11800
CGCGATCCGC AACTGGAGCG CAACGTTCAC CGCTCACAGA ACCGCATCGA GTCCTATCAC CAGCTACGCT CAACCATCGC CCAGGTCGGC GGCAAGAAGG 11900
AATTGACCGG GCGCACCGAC ATCGAAATTG AGATCAGCAA CCAGTGCGCC AGGCTGATCG CCAACGCGGT CATCTTCTAC AACTCGGCCA TCCTCTCGCG 12000
GCTGCTGATG AAGTACGAGG CGAGCGGCAA CGCCAAGGCG CACGCTCTCC TGACCCAGAT ATCGCCGGCG GCCTGGCGGC ACATCCTGCT GAACGGGCAT 12100
TACACCTTCC AGAGCGACGG CAAGATGATC GACCTGGATG CGCTCGTGGC GGGGCTGGAG CTGGGATGAC GGAAATTTCG GCGGTTCTGG CTTAGAACCC 12200
C
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Recombination Sites |
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Name |
Coordinates |
Gene |
Sequence |
res |
8412-8542 |
131 |
GCCTGTCGGA AAACATTTGT TTTTCGACAG GCCTTCAACG GTCCTCTGCA CCAACCTCCG AGTGGCCGCA AAATTGTGCG GAAAACTCTG TCGCCAGACG CTACCATACG GAAACCTCGT CTTAATGGTT T |
res_site_I |
8412-8440 |
29 |
GCCTGTCGGA AAACATTTGT TTTTCGACA |
res_site_II |
8474-8517 |
44 |
TGGCCGCAAA ATTGTGCGGA AAACTCTGTC GCCAGACGCT ACCA |
res_site_III |
8518-8542 |
25 |
TACGGAAACC TCGTCTTAAT GGTTT |
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
rocR family |
Tn5501.7 |
2060-3889 |
Passenger Gene |
Other |
- |
transporter |
Tn5501.7 |
3986-4639 |
Passenger Gene |
Other |
- |
tnpA IS200-like |
Tn5501.7 |
4757-5188 |
Transposase |
|
- |
aldehyde dehydrogenase |
Tn5501.7 |
5293-6840 |
Passenger Gene |
Other |
- |
parE |
Tn5501.7 |
7752-8036 |
Passenger Gene |
Toxin |
- |
parD |
Tn5501.7 |
8033-8311 |
Passenger Gene |
Antitoxin |
- |
tnpR |
Tn5501.7 |
8565-9143 |
Accessory Gene |
Resolvase |
+ |
tnpA |
Tn5501.7 |
9140-12169 |
Transposase |
|
+ |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
rocR family |
RocR family |
Tn5501.7 |
1830 |
2060-3889 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Comment: | sigma-54-dependent Fis family transcriptional regulator |
Protein Sequence:
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MDAHTLHDQQ RLVIARQRFV EGVALPSNLL PSTIAHSWAR SREAGLLPWQ SWLAEQDDSL LPLDESDQQL AECVRPEIDR LWQQIGGASW TIFCVNTRGV IVHARQARTL DGPLLPLQIG RRIQESDIGT TAPSCTLAEG VPMVLIGNQH YLSDFEHFFC VSVPIRGLHG EVIGVLDITG IGDRQAGAVL EQLSHAAMAA ENRFFTTLGD CRILSLQHDP RLLGTPLQGL LAVDQTGRIQ NANRAAQRLL GLEQFRPIGK RLDQLFEESS AIDLHRAQQQ LTLSDGSRLY AQVIEQRRES TALHVCSPLL CVSILGADPQ LNRQLDNARK AFAAGVPILL QGETGTGKEV FARALHDQWN AQAPFVAINC SAIPESLIEA ELFGYVEGTF TGARKGGASG QLEAAHGGTL LLDEIGDMPA ALQTRLLRVL QEREITRLGS TTRRALDVRV ISATHCDLQQ RMLDKSFRED LYYRLNGLKI RLPALRERQD LNTLIDLLRQ RYGAPPLEHQ ALMALHRQVW PGNIRQLEQT LRLAAALASD QPMILLEHLP ADMRAESEQE RGSDLQDAVR RTVESALQAN AGNISATASQ LGISRTTLYK KLGRITKSE
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
transporter |
Transporter |
Tn5501.7 |
654 |
3986-4639 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Protein Sequence:
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MDIGGMTVDP QILLPFGHVY DARIAGQSLG SASGLADPII GATFWLVNQP AAGASGRYFG ITPLLYLPWG SYDKHDTLNL GENRFKGDLQ LGWVEPLWGK VSMELYGDAV VYGHNDDAGT GNQTLKQDAT YQLQGNLRYD FNPAQRVALG YSTSTGGKQY LDGNYTGQKT EVQQVRAEFQ QMVGRTVQLS AQLTHDIHVV GGFQEDIGVN LRALLLF
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA IS200-like |
TnpA IS200-like |
Tn5501.7 |
432 |
4757-5188 |
- |
Class: | Transposase |
Function: | single-strand transposase |
Transpoase Chemistry: | HUH |
Protein Sequence:
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MQDYQSLSHT KWDCKYHVVF IPKKRKKLIF GAIRKHLGEV LHELAGQKEC RILEGHLMSD HIHMCISIPP KYSVANVVGY IKGKSAILIA RRFNGRSRNF GGENFWARGY FVSTVGLDEE MVRAYIRHQE KEDEHYDQLK LGM
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
aldehyde dehydrogenase |
Aldehyde dehydrogenase |
Tn5501.7 |
1548 |
5293-6840 |
- |
Class: | Passenger Gene |
Sub Class: | Other |
Protein Sequence:
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MFFIAANDGW PPNHKIKKRG IYPMSSTSLP AIFLPAELWN DRLFTGTWEA GPIAATQVLE PATGNLLGYV ANADAARVAA SAKTASAAQT SWHQQPYDER AALFRKAAKI AEQHFEAIVD WLVRESGSTR AKAAFETSIS IKVLHESAGL PSRSQGEVLP SVPGRLSLAR RRPLGVVGVI SPFNFPLYLA IRAVAPALAT GNAVVLKPDP RTAVCGGFVI ARLFELAGLP AGLLHVLPGG VDAGAALTSD PHVAMIQFTG STGAGRKVGE AAGRHLKKVS LELGGKNSLI VLDDADLDLA LANATWGVYL HQGQICMSTG RLLVQRAIYD RFLERLVAKA KSLTVGDPAT SEVHLGPLIN AQQRDHAHRV VQAAQQAGAT LEAGGGYEGL FFEPTVLGGV TRDNPAFNEE IFGPVAVVVP FDTDEEAVAL ANDTAYGLSA AVLSRDVGRA LKLGEQLRVG LLHINDQTVN DEVINPFGGV GASGNGTSIG GAANWEEFTQ WQWLTVKGEA PAYPL
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
parE |
ParE |
Tn5501.7 |
285 |
7752-8036 |
- |
Class: | Passenger Gene |
Sub Class: | Toxin |
Target: | DNA gyrase |
Sequence Family: | ParE_toxin (Pfam:PF05016) |
Protein Sequence:
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VRVVWTPEAQ QDRADVWDYI AADNPRAAAR MDEIFSDAAA RLIQHPMLGK PGKIPGTREL IPHESYRLVY QIDGETVWIL TLVHTARLWP PVRD
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
parD |
ParD |
Tn5501.7 |
279 |
8033-8311 |
- |
Class: | Passenger Gene |
Sub Class: | Antitoxin |
Sequence Family: | parD (PDB:4Q2U) |
Comment: | RelB |
Protein Sequence:
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MSKQAVFTMK LEPELRAEFM AEAEAAHRPA SQVLRELMRE FVQRQRESRE YDEFLRRKVE AGRASMRAGL GRSNDEVEAE FAARRASVAS QA
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn5501.7 |
579 |
8565-9143 |
+ |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MRVSSDSDRQ STNLQRDALL AVGVDARHLF EDHASGAKDD RAGLARALEF VRPGDVLVVW KLDRLGRSLS HLLAIVTSLK KKQVAFRSLT ENLDTTTPSG EFLFQVFGAL AQYERALIQE RVVAGLAAAR KRGRIGGRPQ AITGEKLEAI VAALDGGMSK AAVCRNFGVK RTTLIETLAR VGWTGSRGAS SR
|
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn5501.7 |
3030 |
9140-12169 |
+ |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MTTKSERLTV LSDAEQEALY GLPDFDDAQR LEYLALTETE LALASSRPGL HAQVYCILQI GYFKAKHAFF RFDWSEVEHD CAFVLSRYFH GESFEHKPIS KHEHYTQREW IADLFGYRPW AAEFLAQLAQ QAAQTVRRDV MPGFIAAELI VWLNEHKIIR PGYTTLQELV SEALSAERRR LAGLLSEVLD ESAKAALGRL LVRDDTLSQL AALKQDAKDF GWRQMARERE KRATLEPLHR IAKALLPKLG VSQQNLLYYA SLANFYTVHD LRNLKADQTY LYLLCYAWVR YRQLSDNLVD AMAYHMKQLE DESSAGAKQS FVAEQVRRQQ DTPQVGRLLS LYIDDSVPDP TPFGDVRQRA YKIMPRDTLQ TTAQRMSVKP VSKLALHWQA VDGLAERIRR HLRPLYVALD LAGTDPGSPW LVALAWAKDV FAKQQRLSQR PLAECPAATL PKRLRPYLLT FDADGKPTDL HADRYEFWLY RQVRKRFQSG ELYLDDSLQH RHFSDELVSL DEKAAVLAQI DIPFLRQPLD AQLDALATEL RAQWLAFNRE LKQGKLTHLE YDKDTQKLTW RKPKGENQKA REKAFYEQLP FCDVADVFRF VNGQCQFLSA LTPLQPRYAK KVADADSLMA VIIAQAMNHG NQVMARTSDI PYHVLESAYQ QYLRHATLHA ANDCISNAIA ALPIFPYYSF DLDALYGAVD GQKFGVERPT VKARHSRKYF GRGKGVVAYT LLCNHVPLNG YLIGAHDYEA HHVFDIWYRN TSDIVPTAIT GDMHSVNKAN FAILHWFGLR FEPRFTDLGD QLKELYSADD PALYDQCLIR PAGRIDRDLI VSEKPNLDQI VATLGLKEMT QGTLIRKLCT YTAPNPTRRA VFEFDKLIRS IYTLRYLRDP QLERNVHRSQ NRIESYHQLR STIAQVGGKK ELTGRTDIEI EISNQCARLI ANAVIFYNSA ILSRLLMKYE ASGNAKAHAL LTQISPAAWR HILLNGHYTF QSDGKMIDLD ALVAGLELG
|
|
Internal Repeat Elements |
|
|
Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
IR |
Tn5045.1 |
452-488 |
GGGGAGCCCG CAGAATTCGG AAAAAATCGT ACGCTAA |
|
References |
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Chu CW, Liu B, Li N, Yao SG, Cheng D, Zhao JD, Qiu JG, Yan X, He Q, He J. A Novel Aerobic Degradation Pathway for Thiobencarb Is Initiated by the TmoAB Two-Component Flavin Mononucleotide-Dependent Monooxygenase System in Acidovorax sp. Strain T1. Appl Environ Microbiol. 2017 Nov 16;83(23):e01490-17. doi: 10.1128/AEM.01490-17. Print 2017 Dec 1. PubMed ID: 28939603
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