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Recombination Sites | |
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Name: Tn4401a |
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Family: Tn3 Group: Tn3000 |
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Evidence of Transposition: no |
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Host |
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Host Organism: | K. pneumoniae YC | Molecular Source: | plasmid pNYC |
Place of Origin: | USA | Date of Isolation: | 2008 |
Host Organism: | K. pneumoniae GR | Molecular Source: | plasmid |
Place of Origin: | Greece | Date of Isolation: | | Date of Isolation: | 2008 |
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Map |
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Terminal Inverted Repeats (IR) |
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IRL (Length: 40 bp) | | GGGGTTCTAAGCGGGAATCCCAGAAAATTCCGTCATTCCG |
IRR (Length: 40 bp) | | GGGGGGGTAAGCGGGAACCCCAGAAAATTCCGCCATTCCG |
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Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTTCTAA GCGGGAATCC CAGAAAATTC CGTCATTCCG TATGATGAAA ATTCAGTCGA CTCCTCGCTT GACGTGACGA GCGCCAAAAG CCTGCCGCAT 100
CTGCCTGGCG CGCTCGAGCT CATCGCCATG CAAATACATC GACGTCGTGG CGATCGACGC ATGGCGTAGG TTGTCGCGCA CCGCGGTGAG CTGAGCTCCC 200
CGGGCCAACG CATGGCTGGC ATGACTGTGA CGCATCCAAT GAGGCGTGGC ACGGCGCAGC TTTTCGGCGG CGACCGGATG ATCGGCCTCA ATGGCCTCAG 300
CGGCTTGCGT AAAGAATCTT CGCAACACGC ACCAAAGGTG AGGGCCGGTG ATGCCGGCAT TACCGTCTTC CCCAAGACTG CCCACCAGGG GCGTTTTCGG 400
ATTCCACCGT TCCCGGCTGA CTGGCAGTTG ACGCTGTGCC AAGTATTGGT CCAGCGCCGT ATACGCGAGC GGCGGCAAGG CCACCTTACC TGGTTTGCCA 500
CCTTTGCCAA CCAAATGCAG CCAGTGGTCA CCGTGCTCGT CGAGGCGGAC ATTACCCAGG ACGGCGCCGA CCAGTTCGCT AGCGCGCAGG CCCGTGGCAT 600
AGCCGAAGTC GAGCATGAAG CGCAGGCGTT GTGCTGCCGG CTCGGACCAG CCGTAGGACC ATTCCAGGCC GTCTGCAATG GCGCGCAGCA GTAGCCATTC 700
TCCCTCGGTA AAGCCTCGCG CCGTATCCAG TGCGGGCCGC AAGGCGTGAC CGCGTACCTT GACGCCGGCG AAAGGGTTGG CCAGCACATA GCGCTGCTCG 800
ATGAGCCACC GGAACAGCGC CGAGAGCACC GTCAGCGCAT ACGCTGCCGA GCGTGCGGAC AAGCCGCCCG AGAAGGGGCG CCATTCCACC GAATCGCGTG 900
GTCGAGGTGG CCCCACCCAA CGCTCGCGCG GGGTCGGGTG CCGGACAAAG GCCCGGTACG CGATTGCATC GTCCGTGGTC AGGGATGATA GCGCCCGTCC 1000
GCGTTCGACG ATGGCCCACA GGATTAGCCG CGCAGCCTCC TTGCGATAGG CGCGCTGTGT GGCGACAGTC TCGTGCAGCG CCAGCCAGGC CTGCACGGCC 1100
TCGTAGTCGT TGGTCGCATT CAGCGTGCAA GCGTTGCGCG GGGCCCGGAA ATTGCCCTGC GAGCCGTCGA CTTCGTTCGG CAGACGCAAC TGCTCCCACG 1200
GCACGATGCC GCTGGGCTGA ATAATCGGGA TCAGGGCCCG GGCGCGCTCG GTGAGCTGCG GATGTGCGGC AAAGAAAGCC TCGACCTGCC GGGCGCCTGT 1300
CATGCCGAGT CCCTCGATGG CTTTCCACCA GCCACGCCGG CGGGGAATGC GCACGGTCAG CGCCGAGAGG GTGTGGATAC CGTACGCCTG CAGTGCCCTG 1400
ACGGTCCTCG GAGACAGCCA CTGGTCGATG CTGTCGCTGA TCTGGGGCTT CGGCGCCGGC AGCGTGGGCA AGAGCCGGAT CGCGCGTTCG ACGGCACCCG 1500
CGCGCCCCTG TCGCTCTTCG GGGGCGTGCT GGAACACGTC GGCCAGATCC GGCCGGTGGC GGCTGTTGGC GAAAACGATG AGCTGGCGGC GGATATGCCC 1600
CAGCATCCCT CGCGCTGATT GACCGGCGGC CTTGCGTGCC GCCAGGTAGT GTTCAACGGC CGCGCGAGAG CTGAGTCCCG CGTACCAGCC GCGCAAGGCA 1700
GCCAGCGAAT CCGCATCGGG AAAGCCGACT GGGGTAGAAC TCGAAGCCGT AGTCTGGCCC GTTTTCATAT GGACAGGTTG CGATTCGAAA AGCGAGTAAC 1800
GCGATAATAA CGATTATTTC AGTAGAATCG AAAATGCCCC ATGTTTCTAC GAAACCTCAA GATAGCAAGA ACGGGCCATG AGCAAGAAGA ACAAGCTACT 1900
CAGCGTCCTA TCCGACGCCG AACAGGAGGC CTTGTATGGC CTGCCGGAGT TCGATGATGC GCAGCAGCTG GAATATCTGG CTGTGACAGA AACCGAGTTG 2000
GCGCTTGCCA ACAGCCGGCC CAGTCTTCAT GCCAAGGTCT ATTGCCTCTT GCAGATCGGC TACTTCAAGG CCAAGCATGC CTTCTTCAGT TTCGACTGGG 2100
ACGAAGTCGA GGACGATTGC GCTTTCGTGC TGAGCCGCTA TTTCCACGGC GAGGTGTTCG AACCCAAGGC GATCACCAAG CATGAACGCT ACACCCAGCG 2200
CGAGCAGATC GCCAAACTAT TCGGCTACTG GCCGTGGTCG GCCGCCTTCC TGCCGCAGCT CGAGCAGCAG GCCGCACGGA CCGTGCGGCG TGACGTAACG 2300
CCGGGGTTCG TCGCCGCCGA GCTGATCGTC TGGCTCAATG AGCACAAGAT TATCCGGCCC GGCTATACGA CCTTGCAAGA GTTGGTCAGC GAAACGCTAT 2400
CCGCCGAGCG CCGGCGCCTG GGCAATCTGC TGGAGCAAGC GTTGGACGAA TCTGCCAAGG CCGCGCTGAG CCAGCTTCTG GTCCGTGATG ACACCCTGTC 2500
GCAACTGGCG GCGCTCAAGC AGGACGCCAA GAATTTCGGC TGGCGCCAGA TGGTCCGCGA GCGCGAAAAG CGCGCCACGC TGGAGCCGCT GCACGCAATC 2600
GCCAAGACAC TGCTGCCTAA ACTCGACGTC TCGCAGCAGA ACCTGCTGTA CTACGCGAGC CTGGCAAACT TCTACACCGT CCACGACCTG CGCAATCTGA 2700
AGGCCGATCA GACCCAACTC TACCTGCTGT GCTATGCCTG GGTACGCTAC CGGCAGCTCT CCGACAACCT GGTCGATGCG ATGGCGTACC ACATGAAGCA 2800
GTTGGAGGAC GAAAGCAGCG CTGGTGCCAA ACAATCCTTT GCCGACGAGC AGGTGCGCCG TCAGCAGGAA ACGCCGCGGG TAGGCCGCCT GCTGTCACTC 2900
TACGTTGATG ATAGCGTGGC CGATCCCACG CCCTTCGGCG AGGTGCGGCA GCGCGCCTAC AAGATCATGC CTCGCGATAC GCTGCAAACC ACGGCGCAGC 3000
GTATGAGCGT GAAGCCGGCG AGCAAGCTGG CCTTGCAGTG GCAGGCGGTG GACGGGCTGG CCGACCGCAT GCGCCGCCAT CTTCGTCCAC TGTACGTTGC 3100
GCTCGACCTC TCCGGCTCCA ATCCAGACAG TCCATGGCTT GCCGCGCTGG CCTGGGCCAA AGGTGTTTTT GCCAAGCAGC AGCGGCTGTC GCAACGGCCA 3200
CTCGACGAGT GGCCCGCGGC GACACTTCCG AAACGCTTGC GGCCGTACCT GCTGACCTTC GACGCCGACG GTAAACCAAC CGGCCTGCAC GCTGACCGCT 3300
ACGAGTTCTG GCTGTACCGC CAGATCAGGA AGCGTCTCCA ATCGGGTGAA CTCTACCTCG ACGACAGCCT GCAACACCGG CACTTCTCAG ATGAACTGGT 3400
TGAGATGGAC AGGAAGATCG ATGTGCTCGC AAAAATGGAG ATCCCCTTCC TGCAGCAACC CGTCCATGCC CAACTCGATG CGCTGACTGC CGAACTGCGC 3500
ACGCAGTGGC TGGCGTTCAA CCGCGAGCTG AAACAGGGCA AGCTGACGCA CCTCGAATAC AACAAGGACA CGCAGAAACT GACCTGGCGC AAGCCCAAGA 3600
GCGAGAATGA GAAAGCGCGC GAAAAGGCAT TCTACGAGAA GCTTCCGTTC TGCGACGTGG CCGACGTGTT TCGCTTCGTC AACGACGAGT GCAAGTTTCT 3700
GTCGGCGTTC ACGCCCATGC AGCCGCGCTA CGCGAAGAAG GTCGCCGACG CTGACAGCCT GATGGCGGTC ATCATCGCGC AAGCGATGAA CCACGGCAAC 3800
CACGTCATGG CGCGCACCAG CGACATCCCG TACCACGTGC TGGATAGCGG CTACCAGCAG TACCTGCGCC AGGCAACGCT GCACGCGGCC AACGACTGCA 3900
TCAGCAACGC CATCGCCACG CTACCGATCT TCCCATACTA CTCGTTCGAC CTCGAAACGC TGTACGGTGC CGTCGACGGG CAGAAATTCA GCGTCGAACG 4000
GCCGACCGTG AAGGCGCGCT ATTCGCGCAA GTACTTCGGG CGCGGCAAGG GCGTGGTCGC CTACACGCTG CTGTGCAACC ACATCCCGCT CAACGGCTAC 4100
CTGATCGGCG CGCACGACTA CGAGGCCCAC CACGTGTTCG ACATCTGGTA TCGCAACACG TCGGACATCA TGCCGACCGC GATCACCGGC GACATGCACA 4200
GCGTCAACAA GGCCAACTTC GCCATCCTGC ATTGGTTTGG CCGGCGGTTC GAGCCGCGCT TCACCGACCT CAACGCGCAA TTGAAAGAAC TCTACTGCGC 4300
TGACGATCCA GCACAGTATC AGGCGTGCCT GATTCGGCCA GTCGGGAAAA TCGACTGCGA TCTCATCCAT CGCGAGAAGC CGAACATCGA CCGGATCGTC 4400
GCCACACTCG GGCTGAAGGA AATGACGCAG GGCACGCTGA TCCGCAAGCT GTGCACCTAC ACCACGACGA ACCCGACGCG GCGCGCGATC TTCGAGTTCG 4500
ACAAGCTCAT CCGCAGCATC TACACGCTTC GCTACCTGCG CGATCCGCAA CTGGAACGCA ACGTGCACCG CTCGCAAAAT CGCCTCGAGT CCTACCATCA 4600
GCTACGCTCG GCCATTGCCC AGGTCGGCGG TAAGAAGGAA CTGACCGGTC GCACCGACAT TGAAATCGAG ATCAGCAACC AGTGCGCACG GCTGATCGCC 4700
AACACGATCA TTTTCTACAA CTCGGCAATC TTGTCGCGGC TGGTGACCAA GTACGAGGCG GCCGGCAACA GCAAGGCGCT GGCACTCATC ACAAAAATTT 4800
CGCCTGCGGC ATGGCGGCAC ATCCTGCTCA ACGGGCACTA CACCTTTCAA AGCAGCGGCA AGACGATCGA TCTCGATGCG ATCGTCGCAG GCCTGGAACT 4900
GGAGTGACGG AATTTTCAGC GGTTCCGTGT TAGCAGCAGT GTAAAACTGA CCCACCCCAG CGAAGTAAAA CTGATCCACC TGGGCTAGTT TGGCGGCCTT 5000
TTCGAGGCCG TCGATGTTGA CCCAGGAGCA AACCGTGGAA ATCAGAGTTC TTGCCCGACA GGGCCACTCC ATCCGGCACA TCGCCCGCAC GTTGGGGGTC 5100
TCGCGCAATA CCGTGCGCCG CTACCTCCGC GATCCGTCGG TAGCGCGATA CCAGCCCCGT GAACCACGCC CCACCAAACT GGGGCCATTT GAATCTTATC 5200
TGCGGCAACG GGTCGAGCAG GCCCACCCCA TCTGGCTGCC TGCCACCGTC CTGAATCGGG AAATCCGCGC TCAAGGGTAT GGCGGCGGTC TCTCGTTATT 5300
GCGCGCCTTC CTCGCCACGC TCAAGCCCGC CCGCCGCGAA GCAGGTCCGG CCGTCCGTTT CGAGACCGAG CCCGGACGGC AGTTGCAGGC TGATTTCGTG 5400
GTCTTGCGCC GGGCCAGATC CCCCATGTCG GCCTTCGTCG CCACGCTGGG ATACAGCCGC ATGACGTTTG TCACCTTCGT ACCGGACGAA TCCTTCGAGT 5500
CCGTGCGGGA CTCCCTGTTG CTGGCTTTTG ACTATCTGGG CGGTGTGCCC CGCGAGGTGT TGTTCGACAA CATGAAGACC GTGGTGCTGG AACGCGATGC 5600
CTACGGTGAC GGCAAGCACC GTTTTCACCC CGGCTTGCTT CAACTGGCCG ATGACCTGGG GTTCCGGATC CGGCTGTGTC GCCCGTATCG GGCCCAGACC 5700
AAAGGCAAGG TCGAGCGCTT CAATCGCTAC TTCCGCGAGA GCTTCTACAA CCCGTTGCTG ACCCGGATGA AGGGCACGGG GCTGCTGCTC GATTGTGCTG 5800
CTGCCAACCG ACGCGTCCGT GACTGGTTGG CAGACGAGGC GAATGTGCGG GTCCACGCCA CCCTGAACGA GCGCCCCATC GACCGTTGGC GGCAGGAGCG 5900
GGAACACCTG CAACCCTTGC CATCCCGTGT GCGGCGCGAC GAGGCCCCCC TGCTGGATAA CAGTCTCCGC CCGGTACCAC TGGAATCTCT CCAGCACCCA 6000
CTGTCTGTCT ATGACGCAAT TGGGGAGGCC TGCCGATGAA CCTCCAGCAT GAGCGGATCG ACGCCCTGTG CCAGCAACTC AAACTCGAAC GGGTGGCAAC 6100
GCATTACCCC GTCCTGGCGC AGCAGGCGGT GCGCGAGGAC TTCAGCTTCA CCGACTTCCT GGAACACCTG TTGCGGCATG AAGCGGGGTG TCGCCAGCAG 6200
CGCAGCCGCG AACTGCTGAC GCGGATGGCT TGCTTCCCGG GCATCAAGAC CCTGGAGGAC TATGACTTCA GCTTCAACCC CGGCGTGCCC AAGGCACTGG 6300
TGCAGGAGCT GGGCAGTCTG GCGTTTGTCG AACGGGCCGA GAACGTGGTG CTGATCGGAC CCTCTGGCAT CGGCAAGACC CACCTCGCCA TCGCCTTGGG 6400
TTACAAGGCC GCGCAAGCCG GGGTCAAGAC ACGCTTCATC ACGGCAGCCG ACCTGATGCT GCAACTGAGC ACGGCGCAGC GACAAGGGCG GCTGAAGGAA 6500
TACTTCAACC GCGCCATCCT CGGTCCACGG CTGCTGGTGA TCGATGAGAT CGGCTACCTG CCTTTCGGAC GCGAGGAAGC GAACCTGTTC TTTCAGGTGG 6600
TGGCGAAGCG CTATGAGAAA GGGGCGATGA TCCTGACCTC GAACCTGCCG TTCAGCCAGT GGGCCGACGC GTTTGCCGGC GATACCACCC TGACAGCCGC 6700
GATGCTGGAT CGGCTGCTGC ACCATGCCCA TATCCTGACC CTGAGCGGCG AAAGCTACCG CTTGAAGGAC AAGAGGAAGG CGGGAGTGGT CAGGAAAAAT 6800
TCCAAACCCG AATGATCCAG GTGGGTCAGT ATTACTTTGG TGATTCAGGG GTAAAGTGGG TCAGTTTTCA GTTGGTGTTG ACACCGGCGT ACCCTCGGTG 6900
CTATCTTCGC GCCCCAATAG TCGGGGCTTG GCCAGGACTT CCTGAGGCCG TCCGTAACGT GGATGCCGAG GTCAGGCGAG GTGGCCGACC CATGAACGCC 7000
GACCTGATTC GTTTTTCAAG CTCGGTGATA ATCCCAGCTG TAGCGGCCTG ATTACATCCG GCCGCTACAC CTAGCTCCAC CTTCAAACAA GGAATATCGT 7100
TGATGTCACT GTATCGCCGT CTAGTTCTGC TGTCTTGTCT CTCATGGCCG CTGGCTGGCT TTTCTGCCAC CGCGCTGACC AACCTCGTCG CGGAACCATT 7200
CGCTAAACTC GAACAGGACT TTGGCGGCTC CATCGGTGTG TACGCGATGG ATACCGGCTC AGGCGCAACT GTAAGTTACC GCGCTGAGGA GCGCTTCCCA 7300
CTGTGCAGCT CATTCAAGGG CTTTCTTGCT GCCGCTGTGC TGGCTCGCAG CCAGCAGCAG GCCGGCTTGC TGGACACACC CATCCGTTAC GGCAAAAATG 7400
CGCTGGTTCC GTGGTCACCC ATCTCGGAAA AATATCTGAC AACAGGCATG ACGGTGGCGG AGCTGTCCGC GGCCGCCGTG CAATACAGTG ATAACGCCGC 7500
CGCCAATTTG TTGCTGAAGG AGTTGGGCGG CCCGGCCGGG CTGACGGCCT TCATGCGCTC TATCGGCGAT ACCACGTTCC GTCTGGACCG CTGGGAGCTG 7600
GAGCTGAACT CCGCCATCCC AGGCGATGCG CGCGATACCT CATCGCCGCG CGCCGTGACG GAAAGCTTAC AAAAACTGAC ACTGGGCTCT GCACTGGCTG 7700
CGCCGCAGCG GCAGCAGTTT GTTGATTGGC TAAAGGGAAA CACGACCGGC AACCACCGCA TCCGCGCGGC GGTGCCGGCA GACTGGGCAG TCGGAGACAA 7800
AACCGGAACC TGCGGAGTGT ATGGCACGGC AAATGACTAT GCCGTCGTCT GGCCCACTGG GCGCGCACCT ATTGTGTTGG CCGTCTACAC CCGGGCGCCT 7900
AACAAGGATG ACAAGTACAG CGAGGCCGTC ATCGCCGCTG CGGCTAGACT CGCGCTCGAG GGATTGGGCG TCAACGGGCA GTAAGGCTCT GAAAATCATC 8000
TATTGGCCCA CCACCGCCGC CCTTGCGGGC GGCATGGATT ACCAACCACT GTCACATTTA GGCTAGGAGT CTGCGCGGCA GAGCCGTGTG ACCGGTTTTC 8100
TGTAGAGCAC TGACGATGGC GGCGGCGCTC TCTGCAATTG GCAAGGCGTC GGCGCCAAGG ATACCAATCT TGCGGCGCGC GGCGTGTTAT GACGACTGGG 8200
GTGCATTTGA GCCGCCCCAT TTAACCTTCG CCCTCACAGA TACGCCATTC GCCTCAGATT TAGCGCCATG CAGACGAGCT TCCACTCGGC TTGCACCTTG 8300
TCCAGGCCCC TCATGCTGAA CTGACGCAAT CCCATCACCG CCTTGATCCA ACCATTCGGA GCCTCCACGA TCGACTTGCG CCGGCGGTAA GCTGCATCGC 8400
CTTGCTCCGT TTTCAATTTC GCCGCAATCG CCGCCGTATG CGGATGGGTC TTGGCATTGA CCTTGGCATC TTCACGTCCC TCGCGGCCGA GGGCAACGAT 8500
GACATCGCCG TGGTGATCGG CGACCTTTGC CAGAACAGCC TCACTACGGA ATCCCGCATC CGCCAGCGTC TGGGCCGGCA TTTCTCCGGT GTTGGCCTGA 8600
ACTGCTGCCA GCATGCCCAG CAGCGCCTGA CTGTCCGCGG CGCAGTTGGT CAACTCCGCC GCCACGATGA TCTGGTGCTC GGCATCGACC GCTGTGTACC 8700
CGTTGTAGCT CTGCTCGGAG CCACCACCGG CGTGTTTCAT GATCCGGCTG TCCGGATCGG TGAAGCTTTC CTGATCACGG TCATCCGGCA CACCAAACTC 8800
GCGTTTGTAC GAGCCACCGC CCTTGTCCGA GCCATCCGGA TGGCGAGGCC GGCGGCCATC GTCTTCGCTG CGCCCCCGGG CCTGGTCCGC TTCACGCTGG 8900
CGCGCTTCCA GGCGCGCCTT TGCCGCCTGG ATCGCCTCCA GGCGCTTCTC GCGGCGAGAA ATCTCGGCAG GAATGTCCAG CTCCGGCTCG TTACGCTCCT 9000
GGTCGTCGGT AGCCTTGGCG CGATCAAGCA GCGCCTTGAT CTCGCAATGC AATTCGTCCT CGGCCGGCTT CATGCGCTTA TAGCTCATCG CCTTGTGGCG 9100
GCTGGCGTTG GCTTTTACCT TGGTGCCGTC GACCGCGATC GTGCCAAGCT TCACCAGCCC ACATTCGCGC GCCAGTTGCA CCACCTGAAC GAACAAATTC 9200
TCAAGCTCGG TCAGGTGTAG GGCACGGAAG TCACTCAGCG TGCGGTGGGC CGGGAAGTTT CCAGCGGCCA GCACACGCAA CGCGACATCC TCGTACAGCT 9300
TCCTGGCTAG TTTGCGCGAA GAGAAGACGC CGCTCGCGTA ACCATAGATC AGCACTTTGA CCATCATCGC CGGATGAAAC GGCTGATTGC CCGGACCACC 9400
GCCGGCATAC CGGGCGTGGA ATGCGCTCAA GTCCAGCGTA TCGACAGTCT CGCTGATGAA GTAGGCAAGA TGCCCTTCAG GTAGCCACTC TCCCAGAGAA 9500
GGGGGCAGCA GATAGGATTG GTCGGGTCGG TAAGGAAGGT AACTGGCAGC CATCCCCGTA TCGTCCTCGA TCTTCCGCCG ATTTGGCTTC TGCCGCGCAG 9600
GCTCCTAGGC CACCGTAGCT AAACATACGA GAAAAACCGC TTCTTGAGCG CTCTCTGAGA CCACCTTGCC GACAACGCAG AAACGGTTGC GGAAAAATCG 9700
GCGTTTCCGG CGTACGCCAC CCGACCTGGA CGAACTATTG CGGACCTGGA ACTGGAGTAG CGGAATTCCC CGGGGTTTCA GCTTCGCGCC ACAGCGCCTC 9800
AGATAGATGC GGTAGCCTTT GGCGGGTCGT CATGCCGCGG ACCACCCCCC CAAAAAATTC CACAATGCGG AATGGCGGAA TTTTCTGGGG TTCCCGCTTA 9900
CCCCCCC
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ORFs |
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Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
tnpR |
Tn4401a |
53-1768 |
Accessory Gene |
Resolvase |
- |
tnpA |
Tn4401a |
1932-4907 |
Transposase |
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+ |
istA |
ISKpn7 |
5014-6039 |
Transposase |
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+ |
istB |
ISKpn7 |
6036-6815 |
Accessory Gene |
ATPase Transposition Helper |
+ |
bla KPC-3 (ARO:3002313) |
Tn4401a |
7103-7984 |
Passenger Gene |
Antibiotic Resistance |
+ |
tnp |
ISKpn6 |
8234-9553 |
Transposase |
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- |
Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpR |
TnpR |
Tn4401a |
1716 |
53-1768 |
- |
Class: | Accessory Gene |
Sub Class: | Resolvase |
Transpoase Chemistry: | Serine |
Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
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MKTGQTTASS STPVGFPDAD SLAALRGWYA GLSSRAAVEH YLAARKAAGQ SARGMLGHIR RQLIVFANSR HRPDLADVFQ HAPEERQGRA GAVERAIRLL PTLPAPKPQI SDSIDQWLSP RTVRALQAYG IHTLSALTVR IPRRRGWWKA IEGLGMTGAR QVEAFFAAHP QLTERARALI PIIQPSGIVP WEQLRLPNEV DGSQGNFRAP RNACTLNATN DYEAVQAWLA LHETVATQRA YRKEAARLIL WAIVERGRAL SSLTTDDAIA YRAFVRHPTP RERWVGPPRP RDSVEWRPFS GGLSARSAAY ALTVLSALFR WLIEQRYVLA NPFAGVKVRG HALRPALDTA RGFTEGEWLL LRAIADGLEW SYGWSEPAAQ RLRFMLDFGY ATGLRASELV GAVLGNVRLD EHGDHWLHLV GKGGKPGKVA LPPLAYTALD QYLAQRQLPV SRERWNPKTP LVGSLGEDGN AGITGPHLWC VLRRFFTQAA EAIEADHPVA AEKLRRATPH WMRHSHASHA LARGAQLTAV RDNLRHASIA TTSMYLHGDE LERARQMRQA FGARHVKRGV D
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnpA |
TnpA |
Tn4401a |
2976 |
1932-4907 |
+ |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MYGLPEFDDA QQLEYLAVTE TELALANSRP SLHAKVYCLL QIGYFKAKHA FFSFDWDEVE DDCAFVLSRY FHGEVFEPKA ITKHERYTQR EQIAKLFGYW PWSAAFLPQL EQQAARTVRR DVTPGFVAAE LIVWLNEHKI IRPGYTTLQE LVSETLSAER RRLGNLLEQA LDESAKAALS QLLVRDDTLS QLAALKQDAK NFGWRQMVRE REKRATLEPL HAIAKTLLPK LDVSQQNLLY YASLANFYTV HDLRNLKADQ TQLYLLCYAW VRYRQLSDNL VDAMAYHMKQ LEDESSAGAK QSFADEQVRR QQETPRVGRL LSLYVDDSVA DPTPFGEVRQ RAYKIMPRDT LQTTAQRMSV KPASKLALQW QAVDGLADRM RRHLRPLYVA LDLSGSNPDS PWLAALAWAK GVFAKQQRLS QRPLDEWPAA TLPKRLRPYL LTFDADGKPT GLHADRYEFW LYRQIRKRLQ SGELYLDDSL QHRHFSDELV EMDRKIDVLA KMEIPFLQQP VHAQLDALTA ELRTQWLAFN RELKQGKLTH LEYNKDTQKL TWRKPKSENE KAREKAFYEK LPFCDVADVF RFVNDECKFL SAFTPMQPRY AKKVADADSL MAVIIAQAMN HGNHVMARTS DIPYHVLDSG YQQYLRQATL HAANDCISNA IATLPIFPYY SFDLETLYGA VDGQKFSVER PTVKARYSRK YFGRGKGVVA YTLLCNHIPL NGYLIGAHDY EAHHVFDIWY RNTSDIMPTA ITGDMHSVNK ANFAILHWFG RRFEPRFTDL NAQLKELYCA DDPAQYQACL IRPVGKIDCD LIHREKPNID RIVATLGLKE MTQGTLIRKL CTYTTTNPTR RAIFEFDKLI RSIYTLRYLR DPQLERNVHR SQNRLESYHQ LRSAIAQVGG KKELTGRTDI EIEISNQCAR LIANTIIFYN SAILSRLVTK YEAAGNSKAL ALITKISPAA WRHILLNGHY TFQSSGKTID LDAIVAGLEL E
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
istA |
IstA |
ISKpn7 |
1026 |
5014-6039 |
+ |
Class: | Transposase |
Function: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MLTQEQTVEI RVLARQGHSI RHIARTLGVS RNTVRRYLRD PSVARYQPRE PRPTKLGPFE SYLRQRVEQA HPIWLPATVL NREIRAQGYG GGLSLLRAFL ATLKPARREA GPAVRFETEP GRQLQADFVV LRRARSPMSA FVATLGYSRM TFVTFVPDES FESVRDSLLL AFDYLGGVPR EVLFDNMKTV VLERDAYGDG KHRFHPGLLQ LADDLGFRIR LCRPYRAQTK GKVERFNRYF RESFYNPLLT RMKGTGLLLD CAAANRRVRD WLADEANVRV HATLNERPID RWRQEREHLQ PLPSRVRRDE APLLDNSLRP VPLESLQHPL SVYDAIGEAC R
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
istB |
IstB |
ISKpn7 |
780 |
6036-6815 |
+ |
Class: | Accessory Gene |
Sub Class: | ATPase Transposition Helper |
Comment: | ATPase |
Protein Sequence:
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MNLQHERIDA LCQQLKLERV ATHYPVLAQQ AVREDFSFTD FLEHLLRHEA GCRQQRSREL LTRMACFPGI KTLEDYDFSF NPGVPKALVQ ELGSLAFVER AENVVLIGPS GIGKTHLAIA LGYKAAQAGV KTRFITAADL MLQLSTAQRQ GRLKEYFNRA ILGPRLLVID EIGYLPFGRE EANLFFQVVA KRYEKGAMIL TSNLPFSQWA DAFAGDTTLT AAMLDRLLHH AHILTLSGES YRLKDKRKAG VVRKNSKPE
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
bla KPC-3 (ARO:3002313) |
Bla KPC-3 |
Tn4401a |
882 |
7103-7984 |
+ |
Class: | Passenger Gene |
Sub Class: | Antibiotic Resistance |
Function: | antibiotic inactivation (ARO:0001004) |
Target: | cephalosporin (ARO:0000032)||monobactam (ARO:0000004)||penam (ARO:3000008)||carbapenem (ARO:0000020) |
Sequence Family: | KPC beta-lactamase (ARO:3000059) |
Comment: | perfect match to ARO:3002313 reference sequence |
Protein Sequence:
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MSLYRRLVLL SCLSWPLAGF SATALTNLVA EPFAKLEQDF GGSIGVYAMD TGSGATVSYR AEERFPLCSS FKGFLAAAVL ARSQQQAGLL DTPIRYGKNA LVPWSPISEK YLTTGMTVAE LSAAAVQYSD NAAANLLLKE LGGPAGLTAF MRSIGDTTFR LDRWELELNS AIPGDARDTS SPRAVTESLQ KLTLGSALAA PQRQQFVDWL KGNTTGNHRI RAAVPADWAV GDKTGTCGVY GTANDYAVVW PTGRAPIVLA VYTRAPNKDD KYSEAVIAAA ARLALEGLGV NGQ
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Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
tnp |
Tnp |
ISKpn6 |
1320 |
8234-9553 |
- |
Class: | Transposase |
Transpoase Chemistry: | DDE |
Protein Sequence:
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MAASYLPYRP DQSYLLPPSL GEWLPEGHLA YFISETVDTL DLSAFHARYA GGGPGNQPFH PAMMVKVLIY GYASGVFSSR KLARKLYEDV ALRVLAAGNF PAHRTLSDFR ALHLTELENL FVQVVQLARE CGLVKLGTIA VDGTKVKANA SRHKAMSYKR MKPAEDELHC EIKALLDRAK ATDDQERNEP ELDIPAEISR REKRLEAIQA AKARLEARQR EADQARGRSE DDGRRPRHPD GSDKGGGSYK REFGVPDDRD QESFTDPDSR IMKHAGGGSE QSYNGYTAVD AEHQIIVAAE LTNCAADSQA LLGMLAAVQA NTGEMPAQTL ADAGFRSEAV LAKVADHHGD VIVALGREGR EDAKVNAKTH PHTAAIAAKL KTEQGDAAYR RRKSIVEAPN GWIKAVMGLR QFSMRGLDKV QAEWKLVCMA LNLRRMAYL
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Internal Transposable Elements (TE) |
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TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
ISKpn7-KT378596 |
ISKpn7 |
Insertion Sequence |
sequence:ISKpn7"-null |
1 |
ISKpn6-KT378596 |
ISKpn6 |
Insertion Sequence |
8066-9605 |
1540 |
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Internal Repeat Elements |
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Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
IRL |
ISKpn7 |
4928-4956 |
TGTTAGCAGC AGTGTAAAAC TGACCCACC |
IRR |
ISKpn7 |
6855-6883 |
TCACCCAGTC AAAAGTCAAC CACAACTGT |
IR 5'-end |
Tn4401a |
6884-6915 |
GGCCGCATGG GAGCCACGAT AGAAGCGCGG GG |
IRR |
ISKpn6 |
8066-8081 |
GGAGTCTGCG CGGCAG |
IRL |
ISKpn6 |
9590-9605 |
GACGGCGCGT CCGAGG |
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References |
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1. | Naas T, Cuzon G, Villegas MV, Lartigue MF, Quinn JP, Nordmann P. Genetic structures at the origin of acquisition of the beta-lactamase bla KPC gene. Antimicrob Agents Chemother. 2008 Apr;52(4):1257-63. doi: 10.1128/AAC.01451-07. Epub 2008 Jan 28. PubMed ID: 18227185
| | 2. | Braykov NP, Eber MR, Klein EY, Morgan DJ, Laxminarayan R. Trends in resistance to carbapenems and third-generation cephalosporins among clinical isolates of Klebsiella pneumoniae in the United States, 1999-2010. Infect Control Hosp Epidemiol. 2013 Mar;34(3):259-68. doi: 10.1086/669523. Epub 2013 Jan 23. PubMed ID: 23388360
| | 3. | Cuzon G, Naas T, Nordmann P. Functional characterization of Tn4401, a Tn3-based transposon involved in blaKPC gene mobilization. Antimicrob Agents Chemother. 2011 Nov;55(11):5370-3. doi: 10.1128/AAC.05202-11. Epub 2011 Aug 15. PubMed ID: 21844325
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