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Internal Transposable Elements | |
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References | |
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| Name: Tn402.10 (Synonyms: Tn5090) |
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| Family: Tn402 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Pseudomonas aeruginosa PA298 | Molecular Source: | plasmid pBM908 |
| Place of Origin: | Guangzhou, China | Date of Isolation: | 2019 |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGTCATTTTC AGAAGACGAC TGCACCAGTT GATTGGGCGT AATGGCTGTT GTGCAGCCAG CTCCTGACAG TTCAATATCA GAAGTGATCT GCACCAATCT 100
CGACTATGCT CAATACTCGT GTGCACCAAA GCGAGGTGAG CATGGCGACG GACACCCCAC GGATTCCAGA ACAAGGCGTG GCCACTCTGC CTGATGAGGC 200
TTGGGAGCGT GCGCGCCGTC GTGCGGAGAT CATCAGTCCG TTGGCGCAGT CGGAGACGGT CGGGCACGAA GCGGCCGATA TGGCGGCTCA GGCGCTGGGC 300
TTGTCTCGGC GCCAGGTATA CGTTCTGATC CGGCGTGCCC GGCAAGGCAG CGGCCTCGTG ACGGATCTGG TGCCCGGCCA GTCCGGTGGA GGTAAAGGTA 400
AGGGGCGCTT GCCGGAACCG GTCGAGCGCG TCATCCACGA GCTACTGCAA AAGCGGTTCC TGACCAAGCA GAAGCGCAGC CTAGCGGCCT TTCACCGCGA 500
AGTCACTCAG GTGTGCAAGG CTCAAAAACT GCGAGTGCCG GCGCGCAATA CCGTGGCCTT ACGGATCGCT AGCCTTGACC CGCGCAAGGT CATCCGCCGG 600
CGGGAAGGCC AGGATGCCGC TCGTGACCTA CAAGGTGTGG GCGGCGAGCC TCCTGCCGTG ACCGCGCCGC TGGAGCAGGT GCAGATAGAC CATACGGTCA 700
TCGACCTGAT CGTGGTCGAT GACCGCGACC GGCAACCTAT TGGCCGCCCG TACCTGACCC TCGCCATCGA CGTGTTCACC CGCTGCGTGC TCGGCATGGT 800
CGTCACGCTG GAAGCGCCGT CTGCCGTTTC GGTTGGCCTG TGCCTCGTGC ATGTCGCCTG CGACAAGCGC CCTTGGCTGG AAGGACTGAA CGTGGAAATG 900
GATTGGCAGA TGAGCGGCAA GCCCTTGCTG CTCTACCTAG ACAACGCGGC CGAGTTCAAG AGCGAGGCCC TGCGCCGGGG TTGCGAGCAG CATGGCATCC 1000
GGCTGGACTA TCGCCCGCTG GGACAGCCGC ACTATGGCGG CATCGTGGAA CGGATCATCG GCACGGCGAT GCAGATGATT CACGACGAAC TGCCGGGAAC 1100
GACCTTCTCC AACCCTGACC AGCGCGGCGA CTACGATTCC GAAAACAAGG CCGCCCTGAC GCTGCGCGAG CTAGAGCGCT GGCTCACATT GGCGGTCGGC 1200
ACCTACCACG GTTCGGTGCA CAACGGCCTG CTCCAACCGC CGGCCGCGCG CTGGGCCGAG GCCGTGGCGC GTGTCGGCGT ACCGGCCGTC GTCACACGCG 1300
CTACTTCGTT CCTGGTCGAT TTTCTGCCGA TCCTCCGGCG CACGCTGACC CGCACCGGCT TTGTCATCGA CCACATCCAC TACTACGCCG ATGCGCTCAA 1400
GCCGTGGATT GCGCGGCGTG AACGCTGGCC GTCCTTTCTG ATCCGGCGCG ATCCGCGCGA CATCAGCCGT ATCTGGGTCC TGGAACCGGA GGGACAGCAT 1500
TACCTGGAAA TTCCCTACCG TACCTTGTCG CATCCGGCTG TCACCCTCTG GGAACAACGG CAGGCGCTGG CGAAACTGCG GCAGCAAGGG CGCGAACAGG 1600
TGGATGAGTC GGCGCTGTTC CGCATGATCG GCCAGATGCG TGAGATTGTG ACCAGCGCGC AGAAGGCCAC ACGCAAGGCG CGGCGTGACG CGGATCGCCG 1700
CCAGCACCTC AAGACATCAG CTCGGCCGGA CAAGCCCGTT CCGCCGGATA CGGATATTGC CGACCCGCAG GCAGACAACT TGCCACCCGC CAAACCGTTC 1800
GACCAGATTG AGGAGTGGTA GCCGTGGACG AATATCCCAT CATCGACCTG TCCCACCTGC TGCCGGCGGC CCAGGGCTTG GCCCGTCTTC CGGCGGACGA 1900
GCGCATCCAG CGCCTTCGCG CCGACCGCTG GATCGGCTAT CCGCGCGCAG TCGAGGCGCT GAACCGGCTG GAAGCCCTTT ATGCGTGGCC AAACAAGCAA 2000
CGCATGCCCA ACCTGCTGCT GGTTGGCCCG ACCAACAATG GCAAGTCGAT GATCGTCGAG AAGTTCCGCC GCACCCACCC GGCCAGCTCC GACGCCGACC 2100
AGGAGCACAT CCCGGTGTTG GTCGTGCAGA TGCCGTCCGA GCCGTCCGTG ATCCGCTTCT ACGTCGCGCT GCTCGCCGCG ATGGGCGCGC CGCTGCGCCC 2200
ACGCCCACGG TTGCCGGAAA TGGAGCAACT GGCTCTGGCA CTGCTGCGCA AGGTCGGCGT GCGCATGCTG GTGATCGACG AGCTGCACAA CGTGCTGGCC 2300
GGCAACAGCG TCAACCGCCG GGAATTCCTC AACCTGCTGC GCTTCCTCGG CAACGAACTG CGCATCCCGT TGGTTGGGGT AGGCACGCGC GACGCCTACC 2400
TAGCCATCCG CTCCGATGAC CAGTTGGAAA ATCGCTTCGA GCCGATGATG CTGCCGGTAT GGGAGGCCAA CGACGATTGC TGCTCACTGC TGGCCAGCTT 2500
CGCCGCTTCG CTCCCGCTGC GCCGGCCTTC CCCAATTGCC ACGCTGGACA TGGCTCGCTA CCTGCTCACA CGCAGCGAGG GCACCATAGG GGAACTGGCG 2600
CACTTGCTGA TGGCGGCGGC CATCGTCGCC GTGGAGAGCG GCGAGGAAGC GATCAACCAT CGCACACTCA GCATGGCCGT TTACACCGGA CCCAGCGAGC 2700
GGCGGCGGCA ATTCGAGCGG GAACTGATGT GAAGCCTGCG CCGCGCTGGC CGCTGCATCC CGCCCCGAAA GAAGGCGAGG CGCTGTCCTC ATGGCTCAAC 2800
CGCGTGGCCC TTTGCTATCA CATGGAGGAG CCCGACCTGC TGGAGCACGA TCTTGGTCAC GGCCAGGTCG ATGACCTGGA CACCGCGCCA CCACTCTCGC 2900
TGCTGGCGTT GCTTTCCCAG CGGAGCGGCA TCGAGCTGGA CCGGCTGCGC TGTATGAGTT TCGCCGGATG GGTGCCTTGG CTACTGGACA GCCTTGATGA 3000
CCAGATTCCA GACGCCTTGG AAACCTATGC GTTTCAGCTC TCGGTGTTGC TGCCAAGACT CCGCCGTAAG ACGCGATCCA TCACGAGCTG GCGTGCCTGG 3100
CTGCCCAGCC AGCCGATAAA CCGCGCCTGT CCGCTCTGCC TGAGCGATCC GGAGAACCAA GCCGTACTGC TCGCGTGGAA GCTGCCCCTG ATGCTGAGCT 3200
GCCCGCTGCA TGGCTGCTGG CTGGAATCCT ATTGGGGCGT GCCAGGGCGG TTTCTCGGCT GGGAGAACGC CGACGCCGAA CCGCGCACCG CCAGCGACGC 3300
GATTGCGGCG ATGGACCAGC GTACCTGGCA GGCACTGACA ACCGGTCACG TGGAGCTGCC GCGCCGACGC ATCCACGCCG GATTGTGGTT TCGACTTCTT 3400
CGCACGCTGC TCGATGAGCT GAACACCCCG CTTTCCGCGT GCGGAACCTG CGCGGGGTAT CCCCGCCAAG TCTGGGAAGG CTGCGGGCAT CCGCTGCGTG 3500
CTGGGCAAAG TCTGTGGCGA CCGTATGAAA CCCTGAATCC GATAGTACGG TTACAGATGC TGGAGGCGGC GGCAACGGCA ATCAGCTTGA TTGAGGTGAG 3600
GGACATCAGC CCGCCAGGCG AGCAGGCAAA GCTATTCTGG TCCGAGCCCC AAACCGGGTT CACCAGTGGC CTGCCGACGA AAGCGCCGAA GCCCGAGCCC 3700
ATCAATCACT GGCAGCGTGC AGTCCAGGCC ATCGACGAGG CCATCATTGA AGCGCGACAC AACCCCGAGA CGGCACGCTC GCTGTTCGCG TTGGCTTCCT 3800
ATGGTCGGCG CGATCCCGCT TCCTTGGAAC GGTTGCGCGC CACCTTCGTG AAGGAAGGCA TCCCGCCGGA ATTTCTGTCA CATTACCTGC CTGATGCACC 3900
CTTTGCATGT CTTAAACAAA ATGACGGGTT AAGTGACAAA TTTTGACGGA TAGAGCTTTC CGGCTCACAC TGTCACATAA TCGAACGTAT ACGTGACGGG 4000
TGAAAAGGTG CTGATCGGCT ACATGCGGGT ATCGAAGGCG GACGGATCCC AGTCCACCAA TTTGCAACGC GATGCGCTCA TCGCCGCTGG TGTGAGCCTT 4100
GCGCACCTTT ACGAGGATCT GGCCTCGGGC AGGCGCGATG ATCGCCCAGG GTTGGCTGCT TGCCTGAAGG CGCTTCGTGA AGGGGACACG CTGATCGTGT 4200
GGAAGCTCGA TCGGCTTGGC CGTGATCTGC GCCACCTGAT CAACACCGTG CACGACCTAA CTGCGCGTAG CGTGGGCCTG AAGGTCCTGA CCGGTCACGG 4300
TGCGGCGGTC GACACGACGA CTGCCGCCGG CAAGCTTGTG TTCGGTATTT TTGCCGCGCT GGCCGAGTTC GAGCGTGAGT TGATTTCCGA GCGAACAGTC 4400
GCTGGACTTA TCTCGGCGCG CGCTCGCGGC AGGAAAGGGG GGCGCCCCTT CAAGATGACC GCCGCCAAGC TACGCCTGGC GATGGCCAGC ATGGGGCAAC 4500
CGGAAACCAA GGTGGGCGAT CTCTGCGAAG AACTCGGGAT TACCCGGCAG ACGCTCTACC GGCACGTGTC GCCCAAGGGC GAACTGCGGC CAGACGGCGT 4600
AAAGCTGCTC TCCCTCGGTT CAGCCGCATA AATGGAGGCG ACCTGGAACG GGGCGCTGTT CAGTGCGGCA ACGATCCGAT TACCGGTGTC GACCCAGAGC 4700
AGCCGTAGAG CTTTTGGGAA AGCTGTCGTT CAACGCCGAG TTCAGCGGCA GTTTTTAAGT TGTGATTTTA TGGAATACTT TTGCGCAGCA AAACCATAAA 4800
GCCGCGACTT AAAAACTGTC CAGCGCAGGC ACGAAGTGCT GGAGCGGTGC TGCAACGACT TGTTAGATGA CTGAGTTTAT TAGTGGGCAC TTGCTTTGGA 4900
AAGCAAGTTT AAAACTACTA CACCACTAAC TATGAGCCCC ATACCTACAA AGCCCCACGC ATCAAGCTTT TGCCCATGAA GCAACCAGGC AATGGCTGTA 5000
ATTATGACGA CGCCGAGTCC CGACCAGACT GCATAAGCAA CACCGACAGG GATGGATTTC AGAACCAGAG AAAGAAAATA AAATGCGATG CCATAACCGA 5100
TTATGACAAC GGCGGAAGGG GCAAGCTTAG TAAAGCCCTC GCTAGATTTT AATGCGGATG TTGCGATTAC TTCGCCAACT ATTGAGATAA CAAGAAAAAG 5200
CCAGCCTTTC ATGATATATC TCCCAATTTG TGTAGGGCTT ATTATGCACG CTTAAAAATA ATAAAAGCAG ACTTGACCTG ATAGTTTGGC TGTGAGCAAT 5300
TATGTGCTTA GTGCATCTAA CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG TTAGGCAACA CTGCGTGTTC 5400
GCTCGAATGC CTGGCGTGTT TGAACCATGT ACACGGCTGG ACCATCTGGG GTGGTTACGG TACCTTGCCT CTCAAACCCC GCTTTCTCGT AGCATCGGAT 5500
CGCTCGCAAG TTGCTCGGCG ACGGGTCCGT TTGGATCTTG GTGACCTCGG GATCATTGAA CAGCAACTCA ACCAGAGCTC GAACCAGCTT GGTTCCCAAG 5600
CCTTTGCCCA GTTGTGATGC ATTCGCCAGT GACTGGTCTA TTCCGCGTAC TCCTGGATCG GTTTCTTCTT CCCACCATCC GTCCCCGCTT CCAAGAGCAA 5700
CGTACGACTG GGCATACCCA ATCGGCTCTC CATTCAGCAT TGCAATGTAT GGAGTGACGG ACTCTTGCGC TAAAACGCTT GGCAAGTACT GTTCCTGTAC 5800
GTCAGCAAGT GTCGGGCGTG CTTCTTCTCC GCCCCACCAC TCGACGATAT GAGATCGATT TAGCCACTCA TAGAGCATCG CAAGGTCATG CTCAGTCATG 5900
AGGCGCAGTG TGACGGAATC GTTGCTGTTG GTCACGATGC TGTACTTTGT GATGCCTAAC GCCTGAGTTG AGGGGCTTTT GCGGAGTAGG CGCAGCCTGC 6000
GTAGCAAAAG TCCCGCTCCA ACGATTTGTT ATGCCGCATC TGCTACTCGG CGACTGAGCG ATTTTTGTGT GCTTTGACAA CGTTCGCTGT GTGCTGGAGC 6100
AAGTCTAGAC CGCCCGGTAG ACCGTGCCCG GGAATGACGA CCTCTGCTTC CGGGTAGTGT TTTTGAATCC GCTCAACGGA GGTGGGCCAT TCAGCCAGAT 6200
CGGCATCGGC CACGTTCCCC GCAGACGTGC TTGACAACTC ATGAACGGCA CAACCACCGT ATAGCACGTT CGCTGACGGG ACGTATACAA CCAGATTGTC 6300
GGTCGAATGC GCAGCACCAG GATAGAAGAG CTCTACTGGA CCGAAGCGCA CTGCGTCCCC GCTCGATGAG AGTCCTTCTA GAGAATGCGT GGGAATCTCG 6400
TTCCCCTCTG CCTCGGCTAG CCGGCGTGTC GACGGTGATG CGTACGTTGC CACCCCAGCC GCCCGAAGGA CATCAACGCC GCCGACGCGG TCGTCATGAA 6500
AGTGCGTGGA GACTGCACGC GTTACGGGAA GTCCAATTTG CTTTTCAATC TCCGCGAGAA GTGCCGCTGT GTTTTTCGCA CCCCACGCTG TATCAATCAA 6600
AAGCAACTCA TCACCATCAC GGACAATGAG ACCATTGGAC GGGTAGACCG CGCCATCAAA CGACTGCGTT GCGATATGCG ACCAAACACC ATCGGCAATC 6700
TGGTAAAGTC GGACCTCTCC GACCGGAATT TCGTTGACTG TCGGATACTC ACCACTCGGC TCCCCGGAAT GGGCTAACGG ACTTGCGACA GCCATGACAG 6800
ACGCGGTCAT GTAGACCAAT AAACTACTAA TAACTTTTAA CATCAAGACT CCATAGGGGT GGGTGCGGCA TAACTTTGTT TTAGGGCGAC TGCCCTGCTG 6900
CGTAACATCG TTGCTGCTCC ATAACATCAA ACATCGACCC ACGGCGTAAC GCGCTTGCTG CTTGGATGCC CGAGGCATAG ACTGTACAAA AAAACAGTCA 7000
TAACAAGCCA TGAAAACCGC CACTGCGCCG TTACCACCGC TGCGTTCGGT CAAGGTTCTG GACCAGTTGC GTGAGCGCAT ACGCTACTTG CATTACAGTT 7100
TACGAACCGA ACAGGCTTAT GTCCACTGGG TTCGTGCCTT CATCCGTTTC CACGGTGTGC GTCACCCGGC AACCTTGGGC AGCAGCGAAG TCGAGGCATT 7200
TCTGTCCTGG CTGGCGAACG AGCGCAAGGT TTCGGTCTCC ACGCATCGTC AGGCATTGGC GGCCTTGCTG TTCTTCTACG GCAAGGTGCT GTGCACGGAT 7300
CTGCCCTGGC TTCAGGAGAT CGGAAGACCT CGGCCGTCGC GGCGCTTGCC GGTGGTGCTG ACCCCGGATG AAGTGGTTCG CATCCTCGGT TTTCTGGAAG 7400
GCGAGCATCG TTTGTTCGCC CAGCTTCTGT ATGGAACGGG CATGCGGATC AGTGAGGGTT TGCAACTGCG GGTCAAGGAT CTGGATTTCG ATCACGGCAC 7500
GATCATCGTG CGGGAGGGCA AGGGCTCCAA GGATCGGGCC TTGATGTTAC CCGAGAGCTT GGCACCCAGC CTGCGCGAGC AGCTGTCGCG TGCACGGGCA 7600
TGGTGGCTGA AGGACCAGGC CGAGGGCCGC AGCGGCGTTG CGCTTCCCGA CGCCCTTGAG CGGAAGTATC CGCGCGCCGG GCATTCCTGG CCGTGGTTCT 7700
GGGTTTTTGC GCAGCACACG CATTCGACCG ATCCACGGAG CGGTGTCGTG CGTCGCCATC ACATGTATGA CCAGACCTTT CAGCGCGCCT TCAAACGTGC 7800
CGTAGAACAA GCAGGCATCA CGAAGCCCGC CACACCGCAC ACCCTCCGCC ACTCGTTCGC GACGGCCTTG CTCCGCAGCG GTTACGACAT TCGAACCGTG 7900
CAGGATCTGC TCGGCCATTC CGACGTCTCT ACGACGATGA TTTACACGCA TGTGCTGAAA GTTGGCGGTG CCGGAGTGCG CTCACCGCTT GATGCGCTGC 8000
CGCCCCTCAC TAGTGAGAGG TAGGGCAGCG CAAGTCAATC CTGGCGGATT CACTACCCCT GCGCGAAGGC CATCGGTGCC GCATCGAACG GCCGGTTGCG 8100
GAAAGTCCTC CCTGCGTCCG CTGATGGCCG GCAGCAGCCC GTCGTTGCCT GATGGATCCA ACCCCTCCGC TGCTATAGTG CAGTCGGCTT CTGACGTTCA 8200
GTGCAGCCGT CTTCTGAAAA CGACA
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| r5 |
3870-3883 |
14 |
AATTTCTGTC ACAT |
| r4 |
3875-3888 |
14 |
CTGTCACATT ACCT |
| r3 |
3926-3939 |
14 |
GGGTTAAGTG ACAA |
| res |
3967-4001 |
35 |
ACACTGTCAC ATAATCGAAC GTATACGTGA CGGGT |
| r2 |
3970-3983 |
14 |
CTGTCACATA ATCG |
| r1 |
3986-3999 |
14 |
CGTATACGTG ACGG |
| attC qacE core |
4728-4868 |
141 |
GTTCAACGCC GAGTTCAGCG GCAGTTTTTA AGTTGTGATT TTATGGAATA CTTTTGCGCA
GCAAAACCAT AAAGCCGCGA CTTAAAAACT GTCCAGCGCA GGCACGAAGT GCTGGAGCGG
TGCTGCAACG ACTTGTTAGA T |
| attC AAC(6')-Ib core |
5321-5386 |
66 |
CGTTTGACAT GAGGGGCGGC CAAGGGCGCC AGCCCTTGGA CGTCCCCCTC GATGGAAGGG
TTAGGC |
| attC bla VIM-1 core |
5960-6034 |
75 |
CGCCTGAGTT GAGGGGCTTT TGCGGAGTAG GCGCAGCCTG CGTAGCAAAA GTCCCGCTCC
AACGATTTGT TATGC |
| attI |
6874-6929 |
56 |
CTTTGTTTTA GGGCGACTGC CCTGCTGCGT AACATCGTTG CTGCTCCATA ACATCA |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tniA |
Tn402.10 |
142-1821 |
Transposase |
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+ |
| tniB |
Tn402.10 |
1824-2732 |
Accessory Gene |
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+ |
| tniQ |
Tn402.10 |
2729-3946 |
Accessory Gene |
Target Site Selection |
+ |
| tniR |
Tn402.10 |
4008-4631 |
Accessory Gene |
Resolvase |
+ |
| qacE (ARO:3005009) |
Tn402.10 |
4880-5212 |
Passenger Gene |
Antibiotic Resistance |
- |
| AAC(6')-Ib4 (ARO:3002577) |
Tn402.10 |
5381-5935 |
Passenger Gene |
Antibiotic Resistance |
- |
| bla VIM-1 (ARO:3002271) |
Tn402.10 |
6043-6843 |
Passenger Gene |
Antibiotic Resistance |
- |
| intI1 |
Tn402.10 |
7010-8023 |
Integron Integrase |
Class 1 |
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniA |
TniA |
Tn402.10 |
1680 |
142-1821 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | can be extended upstream by 12 amino acids| identical to tniA (Tn1721 and In2)| 25% amino acid sequence identity to TnsB from Tn7 |
Protein Sequence:
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MATDTPRIPE QGVATLPDEA WERARRRAEI ISPLAQSETV GHEAADMAAQ ALGLSRRQVY VLIRRARQGS GLVTDLVPGQ SGGGKGKGRL PEPVERVIHE
LLQKRFLTKQ KRSLAAFHRE VTQVCKAQKL RVPARNTVAL RIASLDPRKV IRRREGQDAA RDLQGVGGEP PAVTAPLEQV QIDHTVIDLI VVDDRDRQPI
GRPYLTLAID VFTRCVLGMV VTLEAPSAVS VGLCLVHVAC DKRPWLEGLN VEMDWQMSGK PLLLYLDNAA EFKSEALRRG CEQHGIRLDY RPLGQPHYGG
IVERIIGTAM QMIHDELPGT TFSNPDQRGD YDSENKAALT LRELERWLTL AVGTYHGSVH NGLLQPPAAR WAEAVARVGV PAVVTRATSF LVDFLPILRR
TLTRTGFVID HIHYYADALK PWIARRERWP SFLIRRDPRD ISRIWVLEPE GQHYLEIPYR TLSHPAVTLW EQRQALAKLR QQGREQVDES ALFRMIGQMR
EIVTSAQKAT RKARRDADRR QHLKTSARPD KPVPPDTDIA DPQADNLPPA KPFDQIEEW
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniB |
TniB |
Tn402.10 |
909 |
1824-2732 |
+ |
| Class: | Accessory Gene |
| Sequence Family: | ATP binding protein? |
| Comment: | identical to tniB (Tn1721)| similar function to Tn7 tnsC and MuB |
Protein Sequence:
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MDEYPIIDLS HLLPAAQGLA RLPADERIQR LRADRWIGYP RAVEALNRLE ALYAWPNKQR MPNLLLVGPT NNGKSMIVEK FRRTHPASSD ADQEHIPVLV
VQMPSEPSVI RFYVALLAAM GAPLRPRPRL PEMEQLALAL LRKVGVRMLV IDELHNVLAG NSVNRREFLN LLRFLGNELR IPLVGVGTRD AYLAIRSDDQ
LENRFEPMML PVWEANDDCC SLLASFAASL PLRRPSPIAT LDMARYLLTR SEGTIGELAH LLMAAAIVAV ESGEEAINHR TLSMAVYTGP SERRRQFERE
LM
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniQ |
TniQ |
Tn402.10 |
1218 |
2729-3946 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Target Site Selection |
| Comment: | identical to tniQ (Tn1721)|similar function to Tn7 tnsD? |
Protein Sequence:
|
MKPAPRWPLH PAPKEGEALS SWLNRVALCY HMEEPDLLEH DLGHGQVDDL DTAPPLSLLA LLSQRSGIEL DRLRCMSFAG WVPWLLDSLD DQIPDALETY
AFQLSVLLPR LRRKTRSITS WRAWLPSQPI NRACPLCLSD PENQAVLLAW KLPLMLSCPL HGCWLESYWG VPGRFLGWEN ADAEPRTASD AIAAMDQRTW
QALTTGHVEL PRRRIHAGLW FRLLRTLLDE LNTPLSACGT CAGYPRQVWE GCGHPLRAGQ SLWRPYETLN PIVRLQMLEA AATAISLIEV RDISPPGEQA
KLFWSEPQTG FTSGLPTKAP KPEPINHWQR AVQAIDEAII EARHNPETAR SLFALASYGR RDPASLERLR ATFVKEGIPP EFLSHYLPDA PFACLKQNDG
LSDKF
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tniR |
TniR |
Tn402.10 |
624 |
4008-4631 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
| Comment: | resolution of cointegrates || Protein: ACE81792.1 || identical to tniR (Tn1721) |
Protein Sequence:
|
MLIGYMRVSK ADGSQSTNLQ RDALIAAGVS LAHLYEDLAS GRRDDRPGLA ACLKALREGD TLIVWKLDRL GRDLRHLINT VHDLTARSVG LKVLTGHGAA
VDTTTAAGKL VFGIFAALAE FERELISERT VAGLISARAR GRKGGRPFKM TAAKLRLAMA SMGQPETKVG DLCEELGITR QTLYRHVSPK GELRPDGVKL
LSLGSAA
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| qacE (ARO:3005009) |
QacE |
Tn402.10 |
333 |
4880-5212 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic efflux (ARO:0010000) |
| Target: | quaternary ammonium salts |
| Sequence Family: | major facilitator superfamily (MFS) antibiotic efflux pump (ARO:0010002) |
| Comment: | SMR export pump||strict match to reference sequence for ARO:3005009 (bitscore:203) |
Protein Sequence:
|
MKGWLFLVIS IVGEVIATSA LKSSEGFTKL APSAVVIIGY GIAFYFLSLV LKSIPVGVAY AVWSGLGVVI ITAIAWLLHG QKLDAWGFVG MGLIVSGVVV
LNLLSKASAH
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| AAC(6')-Ib4 (ARO:3002577) |
AAC(6')-Ib4 |
Tn402.10 |
555 |
5381-5935 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | aminoglycoside antibiotic (ARO:0000016) |
| Sequence Family: | AAC(6') (ARO:3000345) |
| Comment: | strict match to reference sequence for ARO:3002577 (bitscore: 380) |
Protein Sequence:
|
MTNSNDSVTL RLMTEHDLAM LYEWLNRSHI VEWWGGEEAR PTLADVQEQY LPSVLAQESV TPYIAMLNGE PIGYAQSYVA LGSGDGWWEE ETDPGVRGID
QSLANASQLG KGLGTKLVRA LVELLFNDPE VTKIQTDPSP SNLRAIRCYE KAGFERQGTV TTPDGPAVYM VQTRQAFERT RSVA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| bla VIM-1 (ARO:3002271) |
Bla VIM-1 |
Tn402.10 |
801 |
6043-6843 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic inactivation (ARO:0001004) |
| Target: | carbapenem (ARO:0000020)||cephamycin (ARO:0000044)||penam (ARO:3000008)||penem (ARO:3003706)||cephalosporin (ARO:0000032) |
| Sequence Family: | VIM beta-lactamase (ARO:3000021) |
| Comment: | strict match to reference sequence for ARO:3002271 (bitscore: 536) |
Protein Sequence:
|
MLKVISSLLV YMTASVMAVA SPLAHSGEPS GEYPTVNEIP VGEVRLYQIA DGVWSHIATQ SFDGAVYPSN GLIVRDGDEL LLIDTAWGAK NTAALLAEIE
KQIGLPVTRA VSTHFHDDRV GGVDVLRAAG VATYASPSTR RLAEAEGNEI PTHSLEGLSS SGDAVRFGPV ELFYPGAAHS TDNLVVYVPS ANVLYGGCAV
HELSSTSAGN VADADLAEWP TSVERIQKHY PEAEVVIPGH GLPGGLDLLQ HTANVVKAHK NRSVAE
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| intI1 |
IntI1 |
Tn402.10 |
1014 |
7010-8023 |
+ |
| Class: | Integron Integrase |
| Sub Class: | Class 1 |
| Transpoase Chemistry: | Tyrosine |
| Sequence Family: | Class 1 Integron Tyrosine Integrase |
Protein Sequence:
|
MKTATAPLPP LRSVKVLDQL RERIRYLHYS LRTEQAYVHW VRAFIRFHGV RHPATLGSSE VEAFLSWLAN ERKVSVSTHR QALAALLFFY GKVLCTDLPW
LQEIGRPRPS RRLPVVLTPD EVVRILGFLE GEHRLFAQLL YGTGMRISEG LQLRVKDLDF DHGTIIVREG KGSKDRALML PESLAPSLRE QLSRARAWWL
KDQAEGRSGV ALPDALERKY PRAGHSWPWF WVFAQHTHST DPRSGVVRRH HMYDQTFQRA FKRAVEQAGI TKPATPHTLR HSFATALLRS GYDIRTVQDL
LGHSDVSTTM IYTHVLKVGG AGVRSPLDAL PPLTSER
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| Internal Repeat Elements |
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|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| repeat t1 |
Tn402.10 |
9-27 |
TCAGAAGACG ACTGCACCA |
| repeat t2 |
Tn402.10 |
49-67 |
AACACGTCGG TCGAGGACT |
| repeat t3 |
Tn402.10 |
78-97 |
TCAGAAGTGA TCTGCACCAA |
| repeat t4 |
Tn402.10 |
110-128 |
TCAATACTCG TGTGCACCA |
| repeat i4 |
Tn402.10 |
8106-8124 |
AGGAGGGACG CAGGCGACT |
| repeat i3 |
Tn402.10 |
8134-8152 |
CGTCGGGCAG CAACGGACT |
| repeat i2 |
Tn402.10 |
8176-8194 |
ATCACGTCAG CCGAAGACT |
| IRi |
Tn402.10 |
8193-8225 |
CTGCAAGTCA CGTCGGCAGA AGACTTTTGC TGT |
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