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Recombination Sites | |
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| Name: Tn1546.2 |
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| Family: Tn3 Group: Tn4430 |
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| Evidence of Transposition: no |
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| Host |
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| Host Organism: | Enterococcus faecalis KV1 | Molecular Source: | plasmid pSL1 |
| Place of Origin: | Korea | Date of Isolation: | 2006 |
| | Other Geographic Information: | hospital patient |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 38 bp) |  | GGGGTACCGTCAGGAAAATGCGGATTTACAACGTTAAG |
| IRR (Length: 38 bp) | | GGGGTAGCGTCAGGAAAATGCGGATTTACAACGCTAAG |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGGGTACCGT CAGGAAAATG CGGATTTACA ACGTTAAGGA AATTTATTAA AGAGACCAAT TCCTCAGCAC TAAAATTGAT AATTGGGCTT TCTTTGTTAC 100
TATAGTGTTA GGTAAGCTTT TTACTTTATC ACCGGTTTTC CCCTCACTTC ACACCTACGG GCGAGTTTCC CCACATCCCG TTTTCCATCT AATCCAATTC 200
ATTCAATATC TTTATGTGTA TGAAAGATCA GATTGCTTGA TTTAGACATC TTACACGTAA TTTATTCTTA AATGGGTACG GTAAACGAGC AATAATACGA 300
GCAAAAGTAT ACCTACAAAA ATAATAACTC TGTCTAATTT TTTTTGATTC ATATGCTTAT TGCTTAAACC ATATAATTTC AGTCCAAGAA AGCCTCCAAC 400
AGTATTTGTA ATTACATCTG TTATGTCTGT CGCTCCAATA GCGAAGATAA ATTGAATTAT TTCAAAAGTA AGACTTAAAA CCAGTACAAA AGCAAACTTA 500
GGTAAAAATC CGATTTCTTT AAAATTGACA TTCAAAAGCA AGCCAAATGG AATAAAGATT ATAACATTAT CTATCATCTC TCTGAAATTC CCAGTAGCAG 600
TAAATGGAGT CAAGTTAAGA CTTCTTTGAT GATAATTAAA TACTGATAAA ATATTGTATT GTAATTTGAA TAACACTAAC CAGATTAGTG TCACTAAATA 700
TAAAGCTAGC AATCCTCTAG ATAATATTTT TCCCAATATA ATTTCCTCTA ATTCTTTTGT TTAAGTTGTA TCATTAGTAT AGCAATGTCC TAGTTAACGT 800
GGGTTTTAAA TTAAAAAGCT AACGTTACCC CAAAAGTGCT AGTACAATAA TGCTGTTCAT TAATTTCGTT GGTTTCATTC CGCCATCCTT ACCTCCTTGA 900
ATTAGTATGT GTTGATCCGG GAAACACTGT CACAATTACA CCGTCTATAT TGTTTCCTGA TATCTCATAA CGAAGATTAG TCGGCACATG AATGGTGGTA 1000
TTTTTAGTAA CAGGATAATA AAAGATCTCA TATTTTTCCC CATTTACACT AACAGAAATG GTTTTTTCTT CTTTTAGGTA ATCCATATAT TCCTCGAGAA 1100
CGAAATTCTT TTCTTTCATA ATCGCACTAT GTGGTAAACC AACATAGCGA ATATGCCATG GTTCATATTG AATTCCTGTT AACTCTGTTT TGTCCTCTGG 1200
ATAACGTAAA ATGAACCCGT ATTTCCAAGC ATTTTCTTCT ATCCACTTTC CTTCAGGGGC TCGTTCCATT TTCGTCAAGC TTGATCCTAC ATCTAGTGAT 1300
AAACCTGAAT TATGCTCACT ATAACCTGCT GGTAAGGCAT ACTCAGCCCC CATTTCTTGG TAAAGCACAC TTTGCTCATC AAAGTCTCGA TAGCCACTAT 1400
TAATAATAAA ATGACTAACG CCACCCTTTA CAGCATCATT GACCATCTCT GAAAATTTTT GTGCTATTTC TTTTGACATA TAAATATTAC TATCAAGCAA 1500
CCCGTATCCA TTTATTAATT CGTCATGTTT AGATAAATTC ACGATATCTG ACTTCACACT TTCTTGGCGA ACAGGATATT TACTATTGAT TAATAGCAGA 1600
TTTCCTTGAT AAACCTGTTC TTCTGTAATT GTTTTCTCTT GGGTATTTTC AGAAGTCCCA CTATTTTCTA AATGTTCTTT GGGATTTTGA TCATAATTTT 1700
GAAATTCGAC TTTTTCCTGA GAAAACAGTG CTTCATTAAC GTAGTCATAA CCTAAGTATA TTAAGAATAA CAATAACAAT AAAAAAAACA ACTTCTTCAT 1800
TTTCAGTCTC CTCCTTAACT ATATAGTTGG AAGGGTTCTG TTGCAAAGTT TTAAATCTAC TATCAAATAA GGTAGAATAA TAGAAAAAGA TAGCAGGAGG 1900
AATGACGATG AATCATTTTA AAGGAAAGCA ATTTCAGCAG GATGTGATTA TTGTAGCCGT GGGCTACTAT CTTCGTTATA ACCTTAGCTA TCGTGAAGTT 2000
CAAGAAATCT TATATGATCG TGGCATTAAC GTTTCTCATA CGACGATTTA TCGTTGGGTG CAAGAATATG GCAAACTACT CTATCAAATT TGGAAAAAGA 2100
AAAATAAAAA ATCCTTTTAT TCATGGAAAA TGGATGAAAC GTACATCAAA ATTAAAGGAA AATGGCATTA TTTGTATCGA GCCATCGATG CAGATGGTTT 2200
AACCTTGGAT ATTTGGTTAC GTAAAAAACG GGACACACAA GCAGCCTATG CTTTTCTTAA GCGGTTAGTG AAGCAGTTTG ATGAACCGAA GGTTGTAGTC 2300
ACAGATAAAG CCCCCTCTAT TACAAGTGCC TTTAAGAAAC TAAAAGAATA CGGCTTTTAT CAAGGGACAG AACATCGTAC CATTAAATAC CTGAATAATT 2400
TGATTGAACA AGACCATCGT CCAGTAAAGA GACGCAATAA ATTCTATCGA AGTTTACGCA CTGCCTCTAC CACGATTAAA GGCATGGAAG CCATTCGAGG 2500
ATTATATAAG AAAACCCGAA AAGAAGGCAC TCTCTTCGGG TTTTCGGTCT GTACTGAAAT CAAGGTATTA TTGGGAATCC CAGCTTAAAT CATAGATACC 2600
GTAAGGGATT TTATTCTTTA TTTAAAACTT TGCAACAGAA CCGTTGGAAG TATGAAATAT TTCTAGAATC TTCCCCTTAA ACGGCACAAT CTCGTTTGAG 2700
ATTGTGCCGT TTTGCCCCGT AAATTACAGT CAATTATTTC GCCCTACTGG ATTTACTATT ATCACCAATG TAGATGAATT TTCATAAGTG ATACCCATGC 2800
TGAATTTAAC GAGGCTGAAC TGCCTGTTGA CAATGGGCGG TGTGAAATAC CACCCCTCTA TGCGATCAGT CTTATTATCA GGCTATCTTG CCGCAGCGCA 2900
CGCAGATAAT GACCGCAATA TCGCTCTGCC TTACATCTTC AATACTATCT ACTATATATA AATTCCCTAA GAACCAGTTA CATACGTCGG GTTTCCTGCC 3000
GAAAGAGTTA GCTTATATAG TTTGTCCGTG CAACGGTTAA AAGTTTATTT AACGGGGAAA TCAAAATAGC TATTGGGGTA TGGTTCGTCT CTTAATACAT 3100
AGTGCCACCA TTCGAGGCTA TATGCTTCAA ACCCACTGTT TTCCATGATG GAGCGCAAAC GTCTGCGATT TTGCGCTTCA TTGCATGATA TTCCATTTGC 3200
CGCATGATGA GAGCGTTCAT CCATAAAATC AAATCGGCTC CCCATTGGTA CAAGCTCACC CGTGTCTAAT CGATAAAGCG TAAGATCAAT GGCACTGCCG 3300
CGGCTATGGC TTGATTTTGA AGCCACGTAT CCTTTTGAAA TCATCTCAGT TCGGTCAATA TTGGGATAAT AACTTTCCTT TGTCAGGTTA TTTTCCGGCT 3400
GTGCAGCCCA TTGCATAAAA CAGTTTACAG CACGCTTAGG ACGGTAACCG TCCCATAGAA GCAATCCGTA CCCTTGGGTA GCAGCCAGTT CTTTTGCCTT 3500
CAAAAGCGAT TCAGCCAACT CGTATGTCCC TACAATGCGA TTTACTTCAT AACCGTCAAC CGGTTTTCCG GTGAAATTAT CCCAAGTGGC ATATTTAGCG 3600
TCCCAACGAA CACCGTGTAC TATTTCATCT AAAAAAGTAA ATCCTATTTC CATGCTTATC ACCCCTTTAA CGCTAATACG ATCAAGCGGT CAATCAGTTC 3700
GGGAAGTGCA ATACCTGCAG CGGCCATCAT ACGGGGATAA CGACTGTATG ACGTGAAACC GGGCAGAGTA TTGACTTCGT TCAGTACAAT GCGGCCGTTA 3800
TCTTGTAAAA ACATATCCAC ACGGGCTAGA CCTCTACAGC CGAGCGCTTT ATATATTTTT TTTGCCGTTT CCTGTATCCG TCCTCGCTCC TCTGCTGAAA 3900
GGTCTGCGGG AACGGTTATA ACTGCGTTTT CAGAGCCTTT TTCCGGCTCG ACTTCCTGAT GAATACGAAA GATTCCGTAC TGCAGCCTGA TTTGGTCCAC 4000
CTCGCCAACA ACTAACGCGG CACTGTTTCC CAATACCGCA CAACCGACCT CACAGCCCGA AACAGCCTGC TCAATTAAGA TTTTGCTGTC ATATTGTCTT 4100
GCCGATTCAA TTGCGTAGTC CAATTCGTCC GCGCTATTGA CTTTTTTCAC ACCGAAGGAT GAGCCTGAAC GCGCCGGCTT AACAAAAACA GGATAGGTAA 4200
ACGTAGCTGC CACCGGCCTA TCATCTTTAT TAATAACCCA AAAGGCGGGA GTAGCTATCC CAGCATTTTT CGCAACGATG TATGTCAACG ATTTGTCCAT 4300
ACAAATTGCT GAGCTTTGAA TATCGCAGCC TACAAAAGGG ATACCGGACA ATTCAAACAG ACCTTGTATG GATCCATCTT CACCTGACTT GCCATGCAAA 4400
GCTGAAAATG CTACATCAAC ATGGTTGATT TCATATTCAT GGTTCTTTTT AACAAGTAAT CCGTGCATTT TTTTATCCGG CGAGAGTACA GCTGAATAGC 4500
AATTGTCGTT TTCCCATTCC GCGCAAGGTT TTTCGCACAT TTTCCATACA CCAGATTTCG TAATTCCAAT GTATAACGGC TCGTATTTTT CTTTATTAAT 4600
GTTAGCGGCT ATCTCTATTG CAGATTTTAC CGATACGTCA TGCTCCTCTG AGCAACCCCC AAACAGTATT GCAACTTTTA TTCTATTCAT GCTCCTGTCT 4700
CCTTTCAAAA TCCAAACAGT TTTTAATGGT TTTTTCAACG GTATCACGCA ACGCTTGCTC GGTATAATAG GCCGTATGCG GTGTGATTAT CACGTTAGGC 4800
ATTCTTTGAA GTTTAAGTAA AAATTGATTA TCAATTGGTT TTTGGGTGCA ATCAGAGTAG AAAAACTCTT CCTCTCCTTC CAATACATCC AATGCGGCAC 4900
CGCCCAGTTT CCCGTTTTCT AATGCTTTAA CCAACTCATA GGTATCTACA AGTGGACCGC GCCCAGTATT GATAAGAAAT GCTCCTTGCT TCATTCTCTG 5000
TATTTGTTCG TGGCTGATAA TATAGTGCGT ATCCGTATTG AGCGGCACAT GAAGCGTAAC GATATCGCTA TTTTGCAGCA ACTCATCAAA CGGTACATAG 5100
TTTACCTCTA TACTTCGGCT GCGACTATAA GCCAACACTT TACATCCAAA TCCTCGCAGC CGCTCAATAA CCGCTTTGCC TATCTGGCCC GTTCCCACCA 5200
CACCAACTGT CATGTCGCTG AGTACCTTGC CACGGTCGCT GTCCAACCTG AAATCATGTT TTTCCACAGA GCGCACAATC GATTTTACGT TGCGTACTGC 5300
CATAAGAATT AGCATCATAG TATAATCGGC AACGCTATCC GGCGAGTACG CCACATTGTC GACAGTGATG CCCATTCTCT TAGCAGCAGT TGTATCTATA 5400
TGATTGCAGC CGATGCTTCG GGTAGAAATA TATTTCACAC CGGCTCTCTT CAGCGCAAGA AGAATAGAGG CGGAAATCTC TGATTTATGT CCCACACTGA 5500
TACATTGATT GAAAGGCGCG GATTTGGCGT TGGATTCCGA CACGTTGGCG TTAATTATCG TTGCCATAAC GCCAAAGCGA GGCGAAAGAG CATGGAATGC 5600
ATCTGCCTCA TCCTGCTCAC ATCCATAAAC AGTAATGCCG ATGTTATTCA TAATTAAGAC CAACCCTTTC TGTGAAAGGC ACCAAATAAA ACGGGGATGC 5700
CAATGGTAAT CTTGTCAAAT CTTTCTCTGA AGAACGAAAA CGGCTCGTTC TTACGGTATT AAGTCTACCG TGTAAGAACG AGCCGTTTCT TAATATTAAA 5800
TTGTTAATTT CCTAAGAAAA AGTAAAGATA ACCTTGAGAT TTTCCTAAAA AATTATATAC ATCTCTTAGG ACCTCCTTTT ATCAACCAAG TCTGGCATCG 5900
CTGGAAGCTC TACCCTAAAC GTCGTATAGT TATCATTGCT TTCCGCGTAA ATCTGCCCTC CATGCTGAAC AATAATTTCT TTTGCAATCG CCAATCCAAG 6000
TCCCGCGCCA CCCGTATCGG AAGAACGAGC ATTGTCCAGC CTATAGAACT TTTCAAATAT GGCAGCTAGC TTATCTTTTG GGATGCTTCC AGTGTTCTTG 6100
AATTCGATTG ACACCACATC CCCGGAGAGG CCCGCGGTAA TGTCAATGAT GCTGTTATCC TCACTGTATG CAGCGGCGTT TTTCAAAATG TTGTTAAAGA 6200
CTCTCGCGAG TTTATCAGGG TCGCCGGACA CGGTCAGATC CTCGGGGGCG TGAATAACCG CCTGTTTTCC ATGTGCGGAA AGCTGAGGAT AAAATTCATC 6300
GGTCATCTGC ACCAGCATAT AGTATAGGTC TATGTGCGTT TTTGTTAGCG TTATCGTTTG TAGGTTATAC CGTGTAATCT CAAAAAACTC GTCGATTAGC 6400
TGTTCGAGTC GATACGCTTT GTCCAACGTG ATATGCACAT ACTTTGCCTT TTGATCTACC GGCATGTCTG GAGCCTCGTC AAGCAGGCTC AAATAACCGA 6500
TAATGGATGT AAGGGGCGTT TTAATATCGT GCGCCAAGTA CATAACAACG TCATTTTTTC TTTGTTCGGC CAGCTTTGCA TCCTGCTCTC GCTTTTCCAG 6600
AGTCCGTTTT AATGTGTTGA GCTTTTGTTC CATAACATCC ATTTCCGCAG AAAGCTCAAT TTGTTTATCT TCGTTCTGAA TAAGTACATC AATGCCGGTA 6700
TTTATCTCGT CAAAGTATTT TGCGAATTTT GAAAGCATGA CGCGACATAG AATAAGAATA CTAATGACAA TCGCCACATA AATAAAGATA TCTATATTGT 6800
TCCGTATGGA ATATTGATAT AATTTCATCG CGTCCAGGTG ATTTAAGTCA TATTTGTTTT CCAAAATACT TAAGATCCAA TCCCCAAGTT TCCCTCGGAT 6900
CATTGAACGA ATATACAACA CGAATACAAT TGCTACCACA ACAATTGCAA CGATATACAT GTAAAGTTTT CGTTCTAGTT TGGAATAGTC GTTTTTTTTA 7000
TTTTTCAATT TTATAACCAA CCCCCCATAC CGTTTTTATA TATTTCGGAT TATCAATGGT GTCGTTCATT TTTTCGCGCA AATGCCGGAT ATGCACGGTG 7100
ATGGTGTTGT TGCTCTTGCT GAAATATTCG TCGCCCCATA TCTCATGAAA TAGCAGCTCG GAGCTAACCA CATTCCCCTT GTTTTCACAG AGGATTCGCA 7200
GTATTGAAAA CTCGGTGGGA GTAAGGGATA ACTGCTTCTC GTTCAGATAA CACTCATGGG TGTTAACATT AATGACAAGG CCGGAGTGGA CGATAACATT 7300
TTCGTTCTGC TCCTTTACTC CACTGAATTT TTTGTATCGG CGCAACTGGG CCTTTACCCG AGCAATTAAC TCCAGTGGGC GAAAGGGCTT CGTTATATAA 7400
TCATCCGCGC CGATTGTTAA CCCTGTAATT TTATCTACCT CTGTATCTTT CCCGGTCAGC ATGATAATCG GATAGGTGTG CTTGTCCCTT ATTTTTTGAC 7500
AGATAGTAAG GCCGCTTGTG CCGGGAAGCA TGATGTCCAA TATGGCAAGG TCAATCTCAG ACTTGTCTAT ACATTCCAAT GCTTCTTTGG CGGTATAGTA 7600
TTTGAAAACC GTATAATTCT CGTTTTTTAA GTATAATTCA ACCAAATCGG CAATTTCATG TTCATCATCC ACAATAAGTA TTTTATCGCT CATAGTTATC 7700
ACCCTTTCAC ATAAGTTTGC CCTTAATAAT TTATCAGATT ATAGGGCCGA ATTTATAAGC ATTTACATAA TAAATGACTA AGAATTTCTT AAGATGATGA 7800
TTCTTTTTTT ATCAAAGGGC TTTTCGGCAT CGCTAGGAGG CTGTTAATAT TTTATAGTTT CCTTTTCTTC TTTAAAAATA TTGCCCATTA GCGGAATACA 7900
GAATGGCTAA TTATTCACTT CTGATAATTT CCTGTATAAT GAAGCCCTAG ATACATTAGT AATTTCACAA ATTTGATTTA CAGTCATATT TCCTTCTTTA 8000
TATAGCTTTA CCGCATAATT CATTCCTGCG TGATTTTTAT GATACTTCTT TAATCGACCT TTAAACTTTC CTTCTTTCTT AGCCAATTCA ATCCCTTCAC 8100
GTTGTCTCAT CCGAATAAGA TCTCGCTCTA ATTGGTTAAC ACCAGCCATT ACAGTAATTA AGAATTGGCT GTATGGATTA TCTTCTGATA AATCAAGCCA 8200
TGTATCTTTT AGTGATTTTA AACTTGCCTT TTTATCTCGT ATGTTATCGA TTAATTCAAA TAGATCTTGT GTACTACGAG TGATTCGAGT TAAGTCTGTA 8300
ACATAAATGA TGTCATCTTC CTGTAAATCG TCTAACACTT TTTGAAGTTG CTCGCGATCC TTTGTTGCTC CTGAAACTTT CTCTTCATAT ATAATATCCA 8400
TTCCGATCTC GTTCAACTGC TGAAATTGTC TTGAAGGATT CTGGTTAGTC GAACTGACAC GAATATAACC GATTTTCCGC AAAATATCAC CTCATTTTTG 8500
AGACAAGTCT TATGAGACGC TCTTAACTAT GATTTTATCA GTCTACTACA TTTGTATCAA TAGAGTACAC TCTATTGATA TATAATTGAA CTAATAAATT 8600
GAAAATACAG AAATGGAATG ATACTGAATG AAAATTGCGA GAGGTAGAGA ATTGCTTACA CCGGAACAGA GACAGGCTTT TATGCAAATC CCTGAAGATG 8700
AATGGATACT GGGGACCTAC TTCACTTTTT CCAAACGGGA TTTAGAAATA GTTAATAAGC GAAGGAGGGA AGAAAACCGT TTAGGATTTG CTGTTCAATT 8800
AGCTGTTCTT CGGTATCCCG GTTGGCCATA CACTCATATC AAAAGCATCC CAGATTCGGT CATACAATAT ATATCGAAAC AGATTGGTGT TAGTCCATCC 8900
TCGCTTGATC ATTATCCTCA AAGGGAAAAT ACACTTTGGG ATCATTTGAA AGAAATTCGA AGTGAATACG ACTTTGTAAC TTTTACCCTG AGTGAATATC 9000
GAATGACATT TAAGTACCTT CATCAATTAG CTTTGGAAAA TGGTGATGCC ATTCATCTAC TGCATGAATG CATAGATTTT CTAAGAAAAA ACAAAATTAT 9100
ACTGCCTGCT ATCACTACAC TTGAAAGAAT GGTGTGGGAA GCAAGGGCAA TGGCTGAAAA GAAGCTATTT AATACGGTTA GTAAATCTCT AACAAATGAG 9200
CAAAAAGAAA AGCTTGAAGG GATTATTACC TCGCAGCATC CATCCGAATC CAATAAAACG ATATTGGGTT GGTTAAAAGA GCCACCGGGT CATCCTTCAC 9300
CCGAAACTTT TCTAAAAATA ATAGAACGAC TCGAATACAT ACGAGGAATG GATTTAGAAA CAGTGCAAAT TAGTCATTTG CACCGTAACC GCCTGTTGCA 9400
GCTGTCTCGC TTAGGCTCAA GATACGAGCC GTATGCATTC CGTGACTTTC AAGAAAATAA ACGTTATTCG ATATTAACCA TCTATTTATT ACAACTTACT 9500
CAGGAGCTAA CGGATAAAGC GTTTGAAATT CATGATAGGC AAATACTTAG TTTGTTATCA AAAGGTCGTA AGGCTCAAGA GGAAATCCAG AAACAAAACG 9600
GTAAAAAGCT AAATGAGAAA GTTATACACT TTACGAACAT CGGACAAGCA TTAATTAAAG CAAGAGAGGA AAAATTAGAC GTTTTTAAGG TTTTAGAATC 9700
GGTTATTGAA TGGAATACCT TTGTCTCTTC AGTAGAAGAG GCTCAGGAAC TTGCACGTCC TGCCGACTAT GATTATTTAG ACTTACTGCA AAAACGGTTT 9800
TATTCACTAA GAAAATATAC GCCAACGCTA TTAAGAGTAT TGGAATTTCA TTCTACAAAG GCAAATGAGC CACTTTTACA AGCTGTTGAG ATTATCCGAG 9900
GAATGAACGA ATCTGGAAAG CGAAAAGTGC CTGATGACTC ACCTGTGGAT TTTATTTCAA AACGATGGAA AAGACATTTA TACGAGGATG ATGGTACAAC 10000
AATTAATCGT CATTACTATG AAATGGCTGT TTTAACAGAA CTTCGGGAGC ATGTTCGGGC AGGAGATGTT TCCATTGTTG GCAGCAGACA ATATAGGGAT 10100
TTTGAGGAAT ATTTGTTTTC GGAAGATACA TGGAATCAAT CGAAGGGGAA TACGAGATTA TCAGTTAGTT TATCATTCGA AGATTATATA ACGGAGAGAA 10200
CCAGCAGCTT TAATGAAAGG TTAAAGTGGT TAGCTGCCAA TTCCAATAAG TTAGATGGGG TTTCTCTTGA AAAAGGAAAG CTATCACTTG CACGCTTAGA 10300
AAAAGATGTT CCAGAAGAAG CAAAAAAATT TAGTGCAAGC CTTTATCAGA TGCTACCAAG AATAAAATTA ACTGATTTAC TCATGGATGT GGCCCATATA 10400
ACAGGATTTC ATGAGCAATT CACTCATGCT TCCAATAATC GAAAACCAGA TAAGGAAGAA ACAATCATTA TCATGGCTGC CCTTTTAGGA ATGGGAATGA 10500
ATATTGGCTT GAGCAAGATG GCCGAAGCCA CACCCGGACT TACATATAAG CAACTAGCCA ATGTATCTCA ATGGCGCATG TATGAAGATG CCATGAATAA 10600
AGCCCAAGCC ATATTAGTAA ACTTTCATCA TAAATTACAA TTGCCTTTCT ATTGGGGCGA CGGTACAACA TCTTCGTCAG ATGGTATGAG AATGCAGCTA 10700
GGTGTTTCAT CACTACATGC AGATGCAAAT CCACATTATG GAACTGGAAA AGGAGCCACC ATCTACCGAT TTACAAGTGA TCAATTCTCT TCTTACTACA 10800
CAAAGATTAT TCATACTAAT TCAAGAGATG CGATTCATGT TTTGGATGGT TTGTTACATC ATGAGACGGA TCTAAACATA GAGGAACATT ATACAGACAC 10900
TGCCGGTTAC ACTGACCAAA TATTCGGACT GACTCATTTA TTAGGATTTA AATTTGCCCC AAGAATAAGG GATTTATCGG ACTCAAAATT ATTTACGATA 11000
GATAAAGCAA GTGAGTATCC AAAACTAGAA GCCATTTTAC GTGGACAAAT AAATACAAAG GTCATTAAAG AAAATTATGA GGATGTTTTG CGATTAGCTC 11100
ATTCTATAAG GGAGGGAACA GTTTCAGCAT CCCTTATTAT GGGGAAGCTA GGTTCCTATT CAAGACAAAA CAGCTTAGCT ACAGCCTTAC GTGAGATGGG 11200
CCGAATAGAA AAAACGATCT TTATTTTGAA TTATATATCG GATGAATCAT TAAGAAGAAA AATACAAAGA GGATTGAATA AAGGAGAAGC CATGAATGGA 11300
TTGGCAAGAG CTATTTTCTT CGGAAAACAA GGTGAGCTTA GAGAACGCAC CATACAGCAT CAATTGCAAA GAGCCAGTGC TTTAAACATA ATTATCAATG 11400
CTATAAGTAT TTGGAATACT CTCCACCTAA CAACAGCAGT TGAATATAAA AAACGGACAG GTAGCTTTAA TGAAGATTTG TTACACCATA TGTCGCCCTT 11500
AGGTTGGGAA CATATTAATT TACTAGGAGA ATACCATTTT AACTCAGAGA AAGTAGTCTC ATTAAATTCT TTAAGACCAC TAAAACTTTC TTAACGTTGT 11600
TAAAAACGAG GGATTCGTCA GGAAAATAGG CTTAGCGTTG TAAATCCGCA TTTTCCTGAC GCTACCCC
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| vanZA (ARO:3002962) |
Tn1546.2 |
251-736 |
Passenger Gene |
Antibiotic Resistance |
- |
| vanYA (ARO:3002955) |
Tn1546.2 |
889-1800 |
Passenger Gene |
Antibiotic Resistance |
- |
| tnp |
IS1216E |
1902-2588 |
Transposase |
|
+ |
| vanXA (ARO:3002949) |
Tn1546.2 |
3045-3653 |
Passenger Gene |
Antibiotic Resistance |
- |
| vanA (ARO:3000010) |
Tn1546.2 |
3659-4690 |
Passenger Gene |
Antibiotic Resistance |
- |
| vanHA (ARO:3002942) |
Tn1546.2 |
4683-5651 |
Passenger Gene |
Antibiotic Resistance |
- |
| vanSA (ARO:3002931) |
Tn1546.2 |
5866-6960 |
Passenger Gene |
Antibiotic Resistance |
- |
| vanRA (ARO:3002919) |
Tn1546.2 |
6998-7693 |
Passenger Gene |
Antibiotic Resistance |
- |
| tnpR |
Tn1546.2 |
7907-8485 |
Accessory Gene |
Resolvase |
- |
| tnpA |
Tn1546.2 |
8628-11594 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanZA (ARO:3002962) |
VanZA |
Tn1546.2 |
486 |
251-736 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | vanZ (ARO:3000116)||glycopeptide resistance gene cluster (ARO:3000234) |
| Comment: | perfect match to reference sequence for ARO:3002962||Synonym: vanZ |
Protein Sequence:
|
MGKILSRGLL ALYLVTLIWL VLFKLQYNIL SVFNYHQRSL NLTPFTATGN FREMIDNVII FIPFGLLLNV NFKEIGFLPK FAFVLVLSLT FEIIQFIFAI
GATDITDVIT NTVGGFLGLK LYGLSNKHMN QKKLDRVIIF VGILLLVLLL VYRTHLRINY V
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanYA (ARO:3002955) |
VanYA |
Tn1546.2 |
912 |
889-1800 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | D-Ala-D-Ala carboxypeptidase |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | vanY (ARO:3000077)||glycopeptide resistance gene cluster (ARO:3000234) |
| Comment: | perfect match to reference sequence for ARO:3002955||D-Ala-D-Ala carboxypeptidase||Synonym: vanY |
Protein Sequence:
|
MKKLFFLLLL LFLIYLGYDY VNEALFSQEK VEFQNYDQNP KEHLENSGTS ENTQEKTITE EQVYQGNLLL INSKYPVRQE SVKSDIVNLS KHDELINGYG
LLDSNIYMSK EIAQKFSEMV NDAVKGGVSH FIINSGYRDF DEQSVLYQEM GAEYALPAGY SEHNSGLSLD VGSSLTKMER APEGKWIEEN AWKYGFILRY
PEDKTELTGI QYEPWHIRYV GLPHSAIMKE KNFVLEEYMD YLKEEKTISV SVNGEKYEIF YYPVTKNTTI HVPTNLRYEI SGNNIDGVIV TVFPGSTHTN
SRR
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1216E |
687 |
1902-2588 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MTMNHFKGKQ FQQDVIIVAV GYYLRYNLSY REVQEILYDR GINVSHTTIY RWVQEYGKLL YQIWKKKNKK SFYSWKMDET YIKIKGKWHY LYRAIDADGL
TLDIWLRKKR DTQAAYAFLK RLVKQFDEPK VVVTDKAPSI TSAFKKLKEY GFYQGTEHRT IKYLNNLIEQ DHRPVKRRNK FYRSLRTAST TIKGMEAIRG
LYKKTRKEGT LFGFSVCTEI KVLLGIPA
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanXA (ARO:3002949) |
VanXA |
Tn1546.2 |
609 |
3045-3653 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | D-Ala-D-Ala dipeptidase |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | vanX (ARO:3000011)||glycopeptide resistance gene cluster (ARO:3000234) |
| Comment: | perfect match to reference sequence for ARO:3002949||Synonym: vanX |
Protein Sequence:
|
MEIGFTFLDE IVHGVRWDAK YATWDNFTGK PVDGYEVNRI VGTYELAESL LKAKELAATQ GYGLLLWDGY RPKRAVNCFM QWAAQPENNL TKESYYPNID
RTEMISKGYV ASKSSHSRGS AIDLTLYRLD TGELVPMGSR FDFMDERSHH AANGISCNEA QNRRRLRSIM ENSGFEAYSL EWWHYVLRDE PYPNSYFDFP
VK
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanA (ARO:3000010) |
VanA |
Tn1546.2 |
1032 |
3659-4690 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | D-alanine--(R)-lactate ligase |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | glycopeptide resistance gene cluster (ARO:3000234)||van ligase (ARO:3002906) |
| Comment: | perfect match to reference sequence for ARO:3000010 |
Protein Sequence:
|
MNRIKVAILF GGCSEEHDVS VKSAIEIAAN INKEKYEPLY IGITKSGVWK MCEKPCAEWE NDNCYSAVLS PDKKMHGLLV KKNHEYEINH VDVAFSALHG
KSGEDGSIQG LFELSGIPFV GCDIQSSAIC MDKSLTYIVA KNAGIATPAF WVINKDDRPV AATFTYPVFV KPARSGSSFG VKKVNSADEL DYAIESARQY
DSKILIEQAV SGCEVGCAVL GNSAALVVGE VDQIRLQYGI FRIHQEVEPE KGSENAVITV PADLSAEERG RIQETAKKIY KALGCRGLAR VDMFLQDNGR
IVLNEVNTLP GFTSYSRYPR MMAAAGIALP ELIDRLIVLA LKG
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanHA (ARO:3002942) |
VanHA |
Tn1546.2 |
969 |
4683-5651 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | D-lactate dehydrogenase VanH-A |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | glycopeptide resistance gene cluster (ARO:3000234)||vanH (ARO:3000006) |
| Comment: | perfect match to reference sequence for ARO:3002942||Synonym: vanH |
Protein Sequence:
|
MNNIGITVYG CEQDEADAFH ALSPRFGVMA TIINANVSES NAKSAPFNQC ISVGHKSEIS ASILLALKRA GVKYISTRSI GCNHIDTTAA KRMGITVDNV
AYSPDSVADY TMMLILMAVR NVKSIVRSVE KHDFRLDSDR GKVLSDMTVG VVGTGQIGKA VIERLRGFGC KVLAYSRSRS IEVNYVPFDE LLQNSDIVTL
HVPLNTDTHY IISHEQIQRM KQGAFLINTG RGPLVDTYEL VKALENGKLG GAALDVLEGE EEFFYSDCTQ KPIDNQFLLK LQRMPNVIIT PHTAYYTEQA
LRDTVEKTIK NCLDFERRQE HE
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanSA (ARO:3002931) |
VanSA |
Tn1546.2 |
1095 |
5866-6960 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | VanA-type vancomycin resistance histidine kinase sensor |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | glycopeptide resistance gene cluster (ARO:3000234)||vanS (ARO:3000071) |
| Comment: | strict match to reference sequence for ARO:3002931 (bitscore: 743)||Missing first 20 amino acids relative to vanSA (ARO:3002931)||Synonym: vanS |
Protein Sequence:
|
MYIVAIVVVA IVFVLYIRSM IRGKLGDWIL SILENKYDLN HLDAMKLYQY SIRNNIDIFI YVAIVISILI LCRVMLSKFA KYFDEINTGI DVLIQNEDKQ
IELSAEMDVM EQKLNTLKRT LEKREQDAKL AEQRKNDVVM YLAHDIKTPL TSIIGYLSLL DEAPDMPVDQ KAKYVHITLD KAYRLEQLID EFFEITRYNL
QTITLTKTHI DLYYMLVQMT DEFYPQLSAH GKQAVIHAPE DLTVSGDPDK LARVFNNILK NAAAYSEDNS IIDITAGLSG DVVSIEFKNT GSIPKDKLAA
IFEKFYRLDN ARSSDTGGAG LGLAIAKEII VQHGGQIYAE SNDNYTTFRV ELPAMPDLVD KRRS
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| vanRA (ARO:3002919) |
VanRA |
Tn1546.2 |
696 |
6998-7693 |
- |
| Class: | Passenger Gene |
| Sub Class: | Antibiotic Resistance |
| Function: | antibiotic target alteration (ARO:0001001) |
| Transpoase Chemistry: | VanA-type vancomycin resistance DNA-binding response regulator |
| Target: | glycopeptide antibiotic (ARO:3000081)||vancomycin (ARO:0000028) |
| Sequence Family: | glycopeptide resistance gene cluster (ARO:3000234)||vanR (ARO:3000574) |
| Comment: | perfect match to reference sequence for ARO:3002919||Synonym: vanR |
Protein Sequence:
|
MSDKILIVDD EHEIADLVEL YLKNENYTVF KYYTAKEALE CIDKSEIDLA ILDIMLPGTS GLTICQKIRD KHTYPIIMLT GKDTEVDKIT GLTIGADDYI
TKPFRPLELI ARVKAQLRRY KKFSGVKEQN ENVIVHSGLV INVNTHECYL NEKQLSLTPT EFSILRILCE NKGNVVSSEL LFHEIWGDEY FSKSNNTITV
HIRHLREKMN DTIDNPKYIK TVWGVGYKIE K
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpR |
TnpR |
Tn1546.2 |
579 |
7907-8485 |
- |
| Class: | Accessory Gene |
| Sub Class: | Resolvase |
| Function: | resolvase; serine site-specific recombinase |
| Transpoase Chemistry: | Serine |
| Sequence Family: | Serine Site-Specific Recombinase |
Protein Sequence:
|
MLRKIGYIRV SSTNQNPSRQ FQQLNEIGMD IIYEEKVSGA TKDREQLQKV LDDLQEDDII YVTDLTRITR STQDLFELID NIRDKKASLK SLKDTWLDLS
EDNPYSQFLI TVMAGVNQLE RDLIRMRQRE GIELAKKEGK FKGRLKKYHK NHAGMNYAVK LYKEGNMTVN QICEITNVSR ASLYRKLSEV NN
|
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnpA |
TnpA |
Tn1546.2 |
2967 |
8628-11594 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
MKIARGRELL TPEQRQAFMQ IPEDEWILGT YFTFSKRDLE IVNKRRREEN RLGFAVQLAV LRYPGWPYTH IKSIPDSVIQ YISKQIGVSP SSLDHYPQRE
NTLWDHLKEI RSEYDFVTFT LSEYRMTFKY LHQLALENGD AIHLLHECID FLRKNKIILP AITTLERMVW EARAMAEKKL FNTVSKSLTN EQKEKLEGII
TSQHPSESNK TILGWLKEPP GHPSPETFLK IIERLEYIRG MDLETVQISH LHRNRLLQLS RLGSRYEPYA FRDFQENKRY SILTIYLLQL TQELTDKAFE
IHDRQILSLL SKGRKAQEEI QKQNGKKLNE KVIHFTNIGQ ALIKAREEKL DVFKVLESVI EWNTFVSSVE EAQELARPAD YDYLDLLQKR FYSLRKYTPT
LLRVLEFHST KANEPLLQAV EIIRGMNESG KRKVPDDSPV DFISKRWKRH LYEDDGTTIN RHYYEMAVLT ELREHVRAGD VSIVGSRQYR DFEEYLFSED
TWNQSKGNTR LSVSLSFEDY ITERTSSFNE RLKWLAANSN KLDGVSLEKG KLSLARLEKD VPEEAKKFSA SLYQMLPRIK LTDLLMDVAH ITGFHEQFTH
ASNNRKPDKE ETIIIMAALL GMGMNIGLSK MAEATPGLTY KQLANVSQWR MYEDAMNKAQ AILVNFHHKL QLPFYWGDGT TSSSDGMRMQ LGVSSLHADA
NPHYGTGKGA TIYRFTSDQF SSYYTKIIHT NSRDAIHVLD GLLHHETDLN IEEHYTDTAG YTDQIFGLTH LLGFKFAPRI RDLSDSKLFT IDKASEYPKL
EAILRGQINT KVIKENYEDV LRLAHSIREG TVSASLIMGK LGSYSRQNSL ATALREMGRI EKTIFILNYI SDESLRRKIQ RGLNKGEAMN GLARAIFFGK
QGELRERTIQ HQLQRASALN IIINAISIWN TLHLTTAVEY KKRTGSFNED LLHHMSPLGW EHINLLGEYH FNSEKVVSLN SLRPLKLS
|
|
| Internal Transposable Elements (TE) |
|
|
| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| IS1216E-U49512 |
IS1216E |
Insertion Sequence |
1834-2642 |
809 |
|
| Internal Repeat Elements |
|
|
| Name |
Associated Mobile Element |
Coordinates |
Sequence (Top Strand) |
| IRL |
IS1216E |
1834-1857 |
GGTTCTGTTG CAAAGTTTTA AATC |
| IRR |
IS1216E |
2620-2642 |
TAAATTTTGA AACGTTGTCT TGG |
|
| References |
|
|
Lim SK, Tanimoto K, Tomita H, Ike Y. Pheromone-responsive conjugative vancomycin resistance plasmids in Enterococcus faecalis isolates from humans and chicken feces. Appl Environ Microbiol. 2006 Oct;72(10):6544-53. doi: 10.1128/AEM.00749-06. PubMed ID: 17021204
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