 |
|
|
|
|
|
|
|
|
|
|
|
Recombination Sites | |
|
|
|
|
|
Internal Transposable Elements | |
|
|
Internal Repeats | |
|
|
References | |
|
|
|
|
|
|
|
|
|
| Name: IS1411 |
|
| Family: ISL3 |
|
| Evidence of Transposition: yes |
|
|
|
| Host |
 |
| Map |
|
| Terminal Inverted Repeats (IR) |
|
|
| | |
| IRL (Length: 24 bp) |  | GGCTCTTCGCATTTAAGGGTGTAG |
| IRR (Length: 24 bp) | | GGCTCTTCGCATTTAAGGGTGTAG |
|
| Sequence |
|
|
|
|
--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGCTCTTCGC ATTTAAGGGT GTAGAAAAAA TCTGACCGGC TGGAAAAGGA GTCGAGGATC TTAGAAAATG TAAGCTCTCA CACCAACAAA AACTAAGCCC 100
CCGACGTGAA CAATCTTACC TTTTCTAGCC CTGATCTTTC CAGCTTTTGC CAACTGAATA ACCTCGGCCT GACTGCCACT GGACAACATC TTTGTGCAGA 200
GCGCGCCGTC ATCGAATGTC GTTTAACCAA AGCACCCGAG CCATGCCCCA AGTGCGGGGC TGCTGGTGTT TCACGCGGTA CTGTCGATAG GCATCTTGCT 300
CACACACCTT ACGGACAACG ACCAACCAGA TTGCTGCTGC GTATCCGTCG CTGGCGTTGT GCTTGCGGCT GTTTCTGGCA TGAAGATACA AACAGTGCAG 400
CACCTCCACG TTCAAAGCTT TCATATGGGG CGATACGCTG GGCATTAGCT GCCATCGTGC TGGATCATCT GTCGGTATCT CGTGTTGCGA GCCAGCTTGA 500
TGTTGCATGG CACACCGCTA ATAATGCCAT TATCAACGAA GGACGGCGCC TGCTTTTTAA TGACTCGACA CGTTTTGACG GTGTGACCGT GCTGGGCGTG 600
GATGAGCATG TTTGGCGACA TACACGCTGT GGTGACAAGT ACGTCACCAT CGTGGTTGAC CTTACGCCCG TGCGTAACAA AAACGGGCCG GCCCGCTTGC 700
TCGATGTGCT GGAAGGCCGC TCCAAACAAG CCTTTAAGCA ATGGCTACAG AGTCGCCCCA AATCGTGGCG TGACCAGATC GAAAGCATTG CCATGGACGG 800
TTTTACGGGG TTTAAATCTG CAGCGCAAGA AGCCCTGCCT CAAGCCCAAA CCGTGCTGGA TCCTTTCCAT GTCGTGCGCT GGGCAAGCAA CATGCTGGAT 900
GAATGCCGCC GGCGTGTGCA ACACGACATC CTGGGCCGCA GAGGGCGTAA AAATGACCCG CTCTACAAAA GCCGTCGAAC GCTACTGACT CGGATCAGCT 1000
ACCTGTCTGA CGCCAACAAA AAGCAACTGT TCCAGCTGTT TGCAGATGAG CACCACCTCG AAGTGGATTG CACCTGGAGC ATGTACCAAC GGGTGGTCAG 1100
CGCCTACAAC GAGCCGGATC GAAAACGCGG TAAAAAACTC ATGGAAGAGG TCATAAATAT CATTACAGTT AGCGACTTGC CCAAAGCGCT CATCGAGGTG 1200
AAAGGCTTGG GGGAAACGCT GAAAAAATAC GCTGAGAGCA TCCTTGCCTA CTTCGACCGG CCAGGAACCA GCAACGGTCC AACAGAAGCT ATCAACGGGC 1300
GACTTGAGCA CTTACGAGGT ACCGCCTTGG GCTTTAGAAA TTTAACCAAT TACATAGCCA GGTGCTTGCT GAAGTCAGGA GGGTTTAGAA ATCAGCTACA 1400
CCCTTAAATG CGAAGAGCC
|
|
|
|
| ORFs |
|
|
| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
IS1411 |
106-1407 |
Transposase |
|
+ |
| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1411 |
1302 |
106-1407 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
|
VNNLTFSSPD LSSFCQLNNL GLTATGQHLC AERAVIECRL TKAPEPCPKC GAAGVSRGTV DRHLAHTPYG QRPTRLLLRI RRWRCACGCF WHEDTNSAAP
PRSKLSYGAI RWALAAIVLD HLSVSRVASQ LDVAWHTANN AIINEGRRLL FNDSTRFDGV TVLGVDEHVW RHTRCGDKYV TIVVDLTPVR NKNGPARLLD
VLEGRSKQAF KQWLQSRPKS WRDQIESIAM DGFTGFKSAA QEALPQAQTV LDPFHVVRWA SNMLDECRRR VQHDILGRRG RKNDPLYKSR RTLLTRISYL
SDANKKQLFQ LFADEHHLEV DCTWSMYQRV VSAYNEPDRK RGKKLMEEVI NIITVSDLPK ALIEVKGLGE TLKKYAESIL AYFDRPGTSN GPTEAINGRL
EHLRGTALGF RNLTNYIARC LLKSGGFRNQ LHP
|
|
|
