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Internal Transposable Elements | |
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Internal Repeats | |
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References | |
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| Name: IS1207 |
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| Family: ISL3 |
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| Evidence of Transposition: yes |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 24 bp) |  | GGCCCTTCCGGTTTTGGGGTACAT |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
GGCCCTTCCG GTTTTGGGGT ACATCACAGA ACCTGGGCTA GCGGTGTAGA CCCGAAAATA AACGAGCCTT TTGTCAGGGT TAAGGTTTAG GTATCTAAGC 100
TAACCAAACA CCAACAAAAG GCTCTACCCA TGAAGTCTAC CGGCAACATC ATCGCTGACA CCATCTGCCG CACTGCGGAA CTAGGACTCA CCATCACCGG 200
CGCTTCCGAT GCAGGTGATT ACACCCTGAT CGAAGCAGAC GCACTCGACT ATACCTCCAC CTGCCCAGAA TGCTCCCAAC CTGGGGTGTT TCGTCATCAC 300
ACCCACCGGA TGCTCATTGA TTTACCCATC GTCGGGTTTC CCACCAAACT GTTTATCCGT CTACCTCGCT ACCGCTGCAC CAACCCGACA TGTAAGCAAA 400
AGTATTTCCA AGCAGAACTA AGCTGCGCTG ACCACGGTAA AAAGGTCACC CACCGGGTCA CCCGCTGGAT TTTGCAACGC CTTGCTATTG ACCGGATGAG 500
TGTTCACGCA ACTGCGAAAG CACTTGGGCT AGGGTGGGAT TTAACCTGCC AACTAGCCCT CGATATGTGC CGTGAGCTGG TCTATAACGA TCCTCACCAT 600
CTTGATGGAG TGTATGTCAT TGGGGTGGAT GAGCATAAGT GGTCACATAA TAGGGCTAAG CATGGTGATG GGTTTGTCAC CGTGATTGTC GATATGACCG 700
GGCATCGGTA TGACTCACGG TGTCCTGCCC GGTTATTAGA TGTCGTCCCA GGTCGTAGTG CTGATGCTTT ACGGTCCTGG CTTGGCTCCC GCGGTGAACA 800
GTTCCGCAAT CAGATACGGA TCGTGTCCAT GGATGGATTC CAAGGCTACG CCACAGCAAG TAAAGAACTC ATTCCTTCTG CTCGTCGCGT GATGGATCCA 900
TTCCATGTTG TGCGGCTTGC TGGTGACAAG CTCACCGCCT GCCGGCAACG CCTCCAGCGG GAGAAATACC AGCGTCGTGG TTTAAGCCAG GATCCGTTGT 1000
ATAAAAACCG GAAGACCTTG TTGACCACGC ACAAGTGGTT GAGTCCTCGT CAGCAAGAAA GCTTGGAGCA GTTGTGGGCG TATGACAAAG ACTACGGGGT 1100
GTTAAAGCTT GCGTGGCTTG CGTATCAGGC GATTATTGAT TGTTATCAGA TGGGTAATAA GCGTGAAGCG AAGAAGAAAA TGCGGACCAT TATTGATCAG 1200
CTTCGGGTGT TGAAGGGGCC GAATAAGGAA CTCGCGCAGT TGGGTCGTAG TTTGTTTAAA CGACTTGGTG ATGTGTTGGC GTATTTCGAT GTTGGTGTCT 1300
CCAACGGTCC GGTCGAAGCG ATCAACGGAC GGTTGGAGCA TTTGCGTGGG ATTGCTCTAG GTTTCCGTAA TTTGAACCAC TACATTCTGC GGTGCCTTAT 1400
CCATTCAGGG CAGTTGGTCC ATAAGATCAA TGCACTCTAA AACAGGAAGA GCC
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| Recombination Sites |
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| Name |
Coordinates |
Gene |
Sequence |
| IRR |
1430-1453 |
24 |
ATGCACTCTA AAACAGGAAG AGCC |
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| tnp |
IS1207 |
130-1440 |
Transposase |
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| tnp |
Tnp |
IS1207 |
1311 |
130-1440 |
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| Class: | Transposase |
| Function: | transposase |
| Transpoase Chemistry: | DDE |
Protein Sequence:
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MKSTGNIIAD TICRTAELGL TITGASDAGD YTLIEADALD YTSTCPECSQ PGVFRHHTHR MLIDLPIVGF PTKLFIRLPR YRCTNPTCKQ KYFQAELSCA
DHGKKVTHRV TRWILQRLAI DRMSVHATAK ALGLGWDLTC QLALDMCREL VYNDPHHLDG VYVIGVDEHK WSHNRAKHGD GFVTVIVDMT GHRYDSRCPA
RLLDVVPGRS ADALRSWLGS RGEQFRNQIR IVSMDGFQGY ATASKELIPS ARRVMDPFHV VRLAGDKLTA CRQRLQREKY QRRGLSQDPL YKNRKTLLTT
HKWLSPRQQE SLEQLWAYDK DYGVLKLAWL AYQAIIDCYQ MGNKREAKKK MRTIIDQLRV LKGPNKELAQ LGRSLFKRLG DVLAYFDVGV SNGPVEAING
RLEHLRGIAL GFRNLNHYIL RCLIHSGQLV HKINAL
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