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Recombination Sites | |
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Internal Repeats | |
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References | |
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| Name: IS1133_p |
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| Family: IS3 Group: IS3 |
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| Evidence of Transposition: no |
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| Host |
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| Map |
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| Terminal Inverted Repeats (IR) |
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| IRL (Length: 27 bp) |  | TGGTCTTGCCTCGGTTTCGTTCCGGTC |
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| Sequence |
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--------10 --------20 --------30 --------40 --------50 --------60 --------70 --------80 --------90 -------100
TGGTCTTGCC TCGGTTTCGT TCCGGTCTTT TTGAGAGCAT TATTTGTTAT CAAGGAGACC ATATATGTCA TTAAAGCATA GTGATGAATT TAAGCGTGAT 100
GCAGTTCGCA TAGCACTCAC TAGTGGCTTA ACACGCCGTC AAGTTGCGTC AGATTTAAGT ATTGGGCTTT CCACGCTTGG GAAATGGATC GCATCAATTT 200
CCGATGAAAC TAAAATTCCT ACCCAAGACA CTGATCTTCT GCGTGAGAAT GAACGTTTAC GCAAAGAGAA CCGTATCCTT CGGGAGGAGA GGGAGATATT 300
AAAAAAGGCA GCAATATTTT TCGCAGTACA AAAGCTGTGA GATTTCAGTT TATTACGGAT TACCGTGGCT CTCTCTCACG TTCACGCATA TGTCGTTTGA 400
TGGGCGTAAC AGATCGTGGT TTACGCGCAT GGAAACGCCG TCCTCCATCA CTGCGCCAGC GTCGTGATCT TATACTTCTA GCGCATATAC GTGAGCAGCA 500
TCGGTTGTGT TTGGGGAGCT ATGGTAGGCC GCGTATGACA GAAGAGTTGA AAGCGCTGGG CCTGCAGGTT GGGCAGCGTC GGGTTGGACG TTTGATGCGC 600
CAGAATAACA TTACAGTTGT TCGAACGCGT AAATTCAAAC GGACAACGGA TAGTCATCAT ACCTTCAACA TTGCACCGAA CCTATTAAAA CAAGACTTTA 700
GCGCAAGCGC ACCCAACCAG AAATGGGCAG GCGATATCAC TTATGTTTGG ACCAGAGAAG GATGGGTCTA TCTTGCTGTT ATCCTTGACC TGTATTCCCG 800
TCGCGTGATT GGCTGGGCAA CAGGTGATCG ATTAAAGCAG GATCTTGCAT TAAGGGCACT GAATATGGCG TTGGCTTTAC GCAAACCACC ACCGGGTTGT 900
ATTCAACACA CAGACCGTGG GAGCCAATAT TGCGCTCATG AATATCAAAA GCTACTGCTC AAACATCAAT TGCTGCCGTC CATGAGCGGG AAAGGCAATT 1000
GTTTTGATAA CTCCGCAGTA GAAAGCTTCT TTAAATCATT AAAGGCTGAG TTGATTTGGC GCAGACACTG GCAAACAAGG CGAGATATTG AGATTGCAAT 1100
CTTCGAATAT ATAAATGGCT TTTATAATCC ACGCCGAAGA CATTCAACAC TCGGCTCTGA TGAATCCCCT AATGATTTTG GTAAAAATCA TTAA
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| ORFs |
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| Gene Name |
Associated TE |
Coordinates |
Class |
Sub Class |
Orientation |
| orfA |
IS1133_p |
65-340 |
Accessory Gene |
Regulator |
+ |
| orfB_p |
IS1133_p |
400-1194 |
Transposase |
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| orfA |
OrfA |
IS1133_p |
276 |
65-340 |
+ |
| Class: | Accessory Gene |
| Sub Class: | Regulator |
| Function: | transposase activity (GO:0004803) |
| Comment: | orfA, together with orfB, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133 |
Protein Sequence:
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MSLKHSDEFK RDAVRIALTS GLTRRQVASD LSIGLSTLGK WIASISDETK IPTQDTDLLR ENERLRKENR ILREEREILK KAAIFFAVQK L
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| Gene Name |
Protein Name |
Associated TE |
Gene Length |
Coordinates |
Strand |
| orfB_p |
N |
IS1133_p |
795 |
400-1194 |
+ |
| Class: | Transposase |
| Transpoase Chemistry: | DDE |
| Comment: | Intact orfB, together with orfA, encodes a fusion protein formed by translational frame-shifting that is the transposase for IS1133 |
Protein Sequence:
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MGVTDRGLRA WKRRPPSLRQ RRDLILLAHI REQHRLCLGS YGRPRMTEEL KALGLQVGQR RVGRLMRQNN ITVVRTRKFK RTTDSHHTFN IAPNLLKQDF
SASAPNQKWA GDITYVWTRE GWVYLAVILD LYSRRVIGWA TGDRLKQDLA LRALNMALAL RKPPPGCIQH TDRGSQYCAH EYQKLLLKHQ LLPSMSGKGN
CFDNSAVESF FKSLKAELIW RRHWQTRRDI EIAIFEYING FYNPRRRHST LGSDESPNDF GKNH
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| Internal Transposable Elements (TE) |
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| TnCentral Accession |
TE Name |
Type |
Coordinates |
Length |
| Tn5393.5-CP027411.1 |
Tn5393.5 |
Transposon |
1-1194 |
1194 |
| Tn10.1_p-CP027411.1 |
Tn10.1 |
Transposon |
1157-1194 |
38 |
| IS10R-AF162223 |
IS10R |
Insertion Sequence |
1157-1194 |
38 |
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