Difference between revisions of "IS Families"

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;2. [[IS Families/IS1595 family|IS<i>1595</i> family]]
 
;2. [[IS Families/IS1595 family|IS<i>1595</i> family]]
  
;3. [[IS Families/IS3 family|IS<i>3</i> family]]
+
;3. [[IS Families/IS3 family|IS<i>3</i> family]] [updated on 04/10/22]
  
 
;4. [[IS Families/IS481 family|IS<i>481</i> family]]
 
;4. [[IS Families/IS481 family|IS<i>481</i> family]]
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;5. [[IS Families/IS4 and related families|IS<i>4</i> and related families]]
 
;5. [[IS Families/IS4 and related families|IS<i>4</i> and related families]]
  
;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;5a. [[IS Families/IS4 and related families#IS701 family|IS<i>701</i> family]]
+
;5a. [[IS Families/IS4 and related families#IS701 family|IS<i>701</i> family]]
  
;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;5b. [[IS Families/IS4 and related families#ISH3 family|IS''H3'' family]]
+
;5b. [[IS Families/IS4 and related families#ISH3 family|IS''H3'' family]]
  
;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;5c. [[IS Families/IS4 and related families#IS1634 family|IS''1634'' family]]
+
;5c. [[IS Families/IS4 and related families#IS1634 family|IS''1634'' family]]
  
 
;6. [[IS Families/IS5 and related IS1182 families|IS<i>5</i> and related IS<i>1182</i> families]]
 
;6. [[IS Families/IS5 and related IS1182 families|IS<i>5</i> and related IS<i>1182</i> families]]
  
;7. [[IS Families/IS6 family|IS<i>6</i> family]] '''<small>[Under Construction]</small>'''
+
;7. [[IS Families/IS6 family|IS<i>6</i> family]] [updated on 05/21/22]
  
 
;8. [[IS Families/IS21 family|IS<i>21</i> family]]
 
;8. [[IS Families/IS21 family|IS<i>21</i> family]]
  
;9. [[IS Families/IS30 family|IS<i>30</i> family]]
+
;9. [[IS Families/IS30 family|IS<i>30</i> family]] [updated on 05/21/22]
  
 
;10. [[IS Families/IS66 family|IS<i>66</i> family]]
 
;10. [[IS Families/IS66 family|IS<i>66</i> family]]
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;14. [[IS Families/IS982 family|IS<i>982</i> family]]
 
;14. [[IS Families/IS982 family|IS<i>982</i> family]]
  
;15. [[IS Families/IS1380 family|IS<i>1380</i> family]]
+
;15. [[IS Families/IS1202 family|'''IS''1202'' family''']] [New Family - under construction]
  
;16. [[IS Families/ISAs1 family|IS<i>As1</i> family]]
+
;16. [[IS Families/IS1380 family|IS<i>1380</i> family]]
  
;17. [[IS Families/ISL3 family|ISL<i>3</i> family]]
+
;17. [[IS Families/ISAs1 family|IS<i>As1</i> family]]
  
;18. [[IS Families/ISAzo13 family|IS<i>Azo13</i> family]]
+
;18. [[IS Families/ISL3 family|IS''L3'' family]]
  
;19. [[IS Families/IS607 family|IS''607'' family]] '''<small>[In progress]</small>'''
+
;19. [[IS Families/ISAzo13 family|IS<i>Azo13</i> family]]
  
;20. [[IS Families/IS91-ISCR families|IS''91'' and related IS''CR'' families]]
+
;20. [[IS Families/IS607 family|IS''607'' family]]
  
;21. [[IS Families/IS200-IS605 family|IS<i>200</i>/IS<i>605</i> family]]
+
;21. [[IS Families/IS91-ISCR families|IS''91'' and related IS''CR'' families]]
 +
 
 +
;22. [[IS Families/IS200-IS605 family|IS<i>200</i>/IS<i>605</i> family]]  [updated on 02/21/22]
 
|}
 
|}
<br /><br />
+
 
 +
 
 +
======'''Quick Access Table:''' Main Characteristics and Summary of Each IS family and Sub-Groups======
 +
<hr>
 +
{| class="wikitable" style="margin:auto"
 +
| colspan="10" |'''Characteristics of insertion sequence families. Abbreviations: DR, duplication repeat; IS, insertion sequence; ORF, open reading frame.'''
 +
|-
 +
! scope="col" |Families||Sub-Groups||Typical size-range (bp)||DR (bp)||Ends||IRs||No ORFs||Frameshift||Catalytic residues||Mechanism
 +
|-
 +
| rowspan="3" |[[IS Families/IS1 family|IS<i>1</i>]]
 +
|—||740–1180||8–9|| rowspan="3" |GGnnnTG||Y||2||ORFAB|| rowspan="3" |DDE|| rowspan="3" |copy-and-paste and cointegrate
 +
|-
 +
|single ORF||800–1200||0–9||N||1||—
 +
|-
 +
|[[IS Families/IS1 family#Major IS1 features|IS<i>Mhu11</i>]]||900–4600||0–10||Y||2||ORFAB
 +
|-
 +
| rowspan="9" |[[IS Families/IS1595 family|IS<i>1595</i>]]
 +
|[[IS Families/IS1595 family#ISPna2 group|IS<i>Pna2</i>]]||1000–1150||8||GGCnnTG|| rowspan="9" |Y||1|| rowspan="9" |—||DDNK|| rowspan="9" |copy-and-paste (?)
 +
|-
 +
|[[IS Families/IS1595 family#ISPna2 group|IS<i>Pna2</i>+pass]]||1500–2600||8||—
 +
|1+pass||—
 +
|-
 +
|[[IS Families/IS1595 family#ISH4 archaeal group|IS<i>H4</i>]]||1000||8||CGCTCTT
 +
| rowspan="5" |1||DDNK
 +
|-
 +
|[[IS Families/IS1595 family#IS1016 group|IS<i>1016</i>]]||700–745||7–9||GGGgctg||DDEK
 +
|-
 +
|[[IS Families/IS1595 family#IS1595 group|IS<i>1595</i>]]||900–1100||8||CcTGATT||DDNK+ER4R7
 +
|-
 +
|[[IS Families/IS1595 family#ISSod11 group|IS<i>Sod11</i>]]||1000–1100||8||nnnGcnTATC||DDHK+ER4R7
 +
|-
 +
|[[IS Families/IS1595 family#ISNwi1 group|IS''Nwi1'']]||1080–1200||8||ggnnatTAT||DDEK+ER4
 +
|-
 +
|[[IS Families/IS1595 family#ISNwi1 group|IS<i>Nwi1</i>+pass]]||1750–4750||8||—
 +
|1+pass||—
 +
|-
 +
|[[IS Families/IS1595 family#ISNha5 group|IS<i>Nha5</i>]]||3450–7900||8||CGGnnTT
 +
|1||DDER/K
 +
|-
 +
| rowspan="5" |[[IS Families/IS3 family|IS<i>3</i>]]
 +
|[[IS Families/IS3 family#Organization|IS<i>150</i>]]||1200–1600||3–4||TG|| rowspan="5" |Y|| rowspan="5" |2|| rowspan="5" |ORFAB|| rowspan="5" |DDE|| rowspan="5" |copy-and-paste
 +
|-
 +
|[[IS Families/IS3 family#Organization|IS<i>407</i>]]||1100–1400||4||TG
 +
|-
 +
|[[IS Families/IS3 family#Organization|IS<i>51</i>]]||1000–1400||3–4||TG
 +
|-
 +
|[[IS Families/IS3 family#Organization|IS<i>3</i>]]||1150–1750||3–4||TGa/g
 +
|-
 +
|[[IS Families/IS3 family#Organization|IS<i>2</i>]]||1300–1400||5||TG
 +
|-
 +
|[[IS Families/IS481 family|IS<i>481</i>]]
 +
|—
 +
|950–1300
 +
|4–15
 +
|TGT
 +
|Y
 +
|1
 +
|—
 +
|DDE
 +
|copy-and-paste (?)
 +
|-
 +
| rowspan="7" |[[IS Families/IS4 and related families|IS<i>4</i>]]
 +
|[[IS Families/IS4 and related families#IS10 and IS50|IS<i>10</i>]]||1200–1350||9||CT|| rowspan="7" |Y|| rowspan="6" |1|| rowspan="7" |DDE||hairpin intermediate|| rowspan="7" |cut-and-paste
 +
|-
 +
|[[IS Families/IS4 and related families#IS10 and IS50|IS<i>50</i>]]||1350–1550||8–9||C||hairpin intermediate
 +
|-
 +
|IS<i>Pepr1</i>||1500–1600||7–8||-T-AA||?
 +
|-
 +
|[[IS Families/IS4 and related families#IS4 family|IS<i>4</i>]]||1400–1600||10–13||-AAT||?
 +
|-
 +
|[[IS Families/IS4 and related families#General|IS<i>4Sa</i>]]||1150–1750||8–10||CA||?
 +
|-
 +
|[[IS Families/IS4 and related families#General|IS<i>H8</i>]]||1400–1800||10|| CAT |?
 +
|-
 +
|[[IS Families/IS4 and related families#IS231|IS<i>231</i>]]||1450–5400||10–12||CAT||1 or + *||*passenger genes
 +
|-
 +
| rowspan="2" |[[IS Families/IS4 and related families#IS701 family|IS<i>701</i>]]
 +
|—||1400–1550||4|| rowspan="2" |—|| rowspan="2" |Y|| rowspan="2" |1|| rowspan="2" |—|| rowspan="2" |DDE|| rowspan="2" |—
 +
|-
 +
|IS<i>Aba11</i>||—||—
 +
|-
 +
|[[IS Families/IS4 and related families#ISH3 family|IS<i>H3</i>]]||—||1225–1500||4–5||C-GT||Y||1||—||DDE||—
 +
|-
 +
|[[IS Families/IS4 and related families#IS1634 family|IS<i>1634</i>]]||—||1500–2000||5–6||C||Y||1||—||DDE||—
 +
|-
 +
| rowspan="6" |[[IS Families/IS5 and related IS1182 families|IS<i>5</i>]]
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS<i>903</i>]]||950–1150||9||GG|| rowspan="6" |Y|| rowspan="5" |1|| rowspan="5" |—|| rowspan="6" |DDE|| rowspan="6" |—
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS<i>L2</i>]]||850–1200||2–3||—
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS<i>H1</i>]]||900–1150||8||-GC
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS''5'']]||1000–1500||4||Ga/g
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS''1031'']]||850–1050||3||GAa/g
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#Distribution|IS''427'']]||800–1000||2–4||Ga/g||2||ORFAB
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#IS1182|IS<i>1182</i>]]||—||1330–1950||0–60||—||Y||1||—||DDE||—
 +
|-
 +
|[[IS Families/IS6 family|IS<i>6</i>]]||—||700–900||8||GG||Y||1||—||DDE||co-integrate
 +
|-
 +
|[[IS Families/IS21 family|IS<i>21</i>]]||—||1750–2600||4–8||TG||Y||2 *||—||DDE||—
 +
|-
 +
|[[IS Families/IS30 family|IS<i>30</i>]]||—||1000–1700||2–3||—||Y||1||—||DDE||copy-and-paste
 +
|-
 +
| rowspan="2" |[[IS Families/IS66 family|IS<i>66</i>]]
 +
|—||2000–3000|| rowspan="2" |8–9|| rowspan="2" |GTAA|| rowspan="2" |Y||3*|| rowspan="2" |—||DDE*|| rowspan="2" |—
 +
|-
 +
|[[IS Families/IS66 family#A list of representative IS66 family members and the ISBst12 group|IS''Bst12'']]||1350–1900||1||DDE
 +
|-
 +
| rowspan="3" |[[IS Families/IS256 family|IS<i>256</i>]]
 +
|—||1200–1500||8–9||Ga/g|| rowspan="3" |Y|| rowspan="3" |1|| rowspan="3" |—|| rowspan="3" |DDE|| rowspan="3" |copy-and-paste
 +
|-
 +
|[[IS Families/IS256 family#IS1249 group|IS<i>1249</i>]]||1300||0–10||GG
 +
|-
 +
|[[IS Families/IS256 family#ISC1250 group|IS<i>C1250</i>]]||1250||0–9||GG
 +
|-
 +
|[[IS Families/IS256 family#ISH6|IS<i>H6</i>]]||—||1450||8||GGT||Y||1||—||DDE||—
 +
|-
 +
|[[IS Families/IS256 family#ISLre2|IS<i>Lre2</i>]]||—||1500–2000||9||—||Y||1||—||DDE||—
 +
|-
 +
| rowspan="3" |[[IS Families/IS256 family#ISKra4|IS<i>Kra4</i>]]
 +
|[[IS Families/IS256 family#ISAzba1|IS<i>Azba1</i>]]||1400–2900||0||—|| rowspan="3" |Y||1 or + *||—|| rowspan="3" |DDE|| rowspan="3" |—
 +
|-
 +
|[[IS Families/IS256 family#ISMich2|IS<i>Mich2</i>]]||1250–1400||8||GGG||1 or 2||ORFAB
 +
|-
 +
|[[IS Families/IS256 family#ISKra4 2|IS<i>Kra4</i>]]||1400–3700||9||GGG||1 or + *||—
 +
|-
 +
|[[IS Families/IS630 family|IS<i>630</i>]]||—||1000–1400||2*||—||Y||1 or 2||ORFAB||DDE||cut-and-paste
 +
|-
 +
|[[IS Families/IS982 family|IS<i>982</i>]]||—||1000||3–9||AC||Y||1||—||DDE||—
 +
|-
 +
|[[IS Families/IS1380 family|IS<i>1380</i>]]||—||1550–2000||4–5||CC||Y||1||—||DDE||—
 +
|-
 +
|[[IS Families/ISAs1 family|IS<i>As1</i>]]||—||1200–1500||8–10||CAGGG||Y||1||—||—||—
 +
|-
 +
|[[IS Families/ISL3 family|IS<i>L3</i>]]||—||1300–2300||8||GG||Y||1||—||—||—
 +
|-
 +
|[[Transposons families/Tn3 family|Tn<i>3</i>]]||—||>3000||0||GGGG||Y||>1||—||DDE||co-integrate
 +
|-
 +
|[[IS Families/ISAzo13 family|IS<i>Azo13</i>]]||—||1250–2200||0–4||Ga/g||Y||1||—||—||—
 +
|-
 +
| rowspan="2" |[[IS Families/IS110 family|IS<i>110</i>]]
 +
|—||1200–1550||0||—||N||1||—||DEDD||—
 +
|-
 +
|IS<i>1111</i>||—||—||—||Y*||—||—||—||—
 +
|-
 +
|[[IS Families/IS91-ISCR families|IS<i>91</i>]]||—||1500–2000||0||—||N||1||—||HUH/Y2||rolling-circle
 +
|-
 +
| rowspan="2" |[[IS Families/IS200-IS605 family|IS<i>200/</i>IS<i>605</i>]]
 +
|[[IS Families/IS200-IS605 family#The IS200 group|IS<i>200</i>]]||600–750||0||—||0||1*||—||HUH/Y1|| rowspan="2" |peel-and-paste
 +
|-
 +
|[[IS Families/IS200-IS605 family#The IS605 group|IS<i>605</i>]]||1300–2000||—||—||—||2*||—||HUH/Y1**
 +
|-
 +
|[[IS Families/IS607 family|IS<i>607</i>]]||—||1700–2500||0||—||N||2*||—||Serine**||—
 +
|-
 +
|[[IS Families/IS1202 family|IS<i>1202</i>]]
 +
|
 +
|1400–1700
 +
|5
 +
|TGT
 +
|Y
 +
|1
 +
|—
 +
|DDE
 +
|—
 +
|-
 +
| rowspan="8" |IS<i>NCY '''*'''</i>
 +
|IS<i>892</i>||1600||0–8||CTAG||Y||2|| rowspan="7" |ORFAB|| rowspan="7" |—|| rowspan="7" |—
 +
|-
 +
|IS<i>Lbi1</i>||1400–1500||5||—||Y||1
 +
|-
 +
|IS<i>Mae2</i>||1400–2400||9||CAG||Y||1
 +
|-
 +
|IS<i>Plu15</i>||800–1000||0||—||N||1
 +
|-
 +
|IS<i>A1214</i>||1000–1200||8–12||—||Y||2
 +
|-
 +
|IS<i>C1217</i>||1200||6–8||TAG||Y||1
 +
|-
 +
|I<i>SM1</i>||1300–1600||8–9||—||Y||1
 +
|-
 +
|[[IS Families/IS5 and related IS1182 families#ISDol1 group .28ISNCY.29|IS<i>Dol1</i>]]
 +
|1600–1900
 +
|6–7
 +
|—
 +
|Y
 +
|1
 +
|—
 +
|DDE
 +
|—
 +
|}<center>'''*''' IS''NCY ='' '''I'''nsertion '''S'''equence '''N'''ot '''C'''lassified '''Y'''et</center><br />
 
<hr />
 
<hr />
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<hr>
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<br />
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{{TnPedia}}
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<hr>
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<span><htmlet nocache="yes" >foobar</htmlet></span>

Revision as of 14:40, 7 November 2022

Prokaryotic Insertion Sequences (IS)
1. IS1 family
2. IS1595 family
3. IS3 family [updated on 04/10/22]
4. IS481 family
5. IS4 and related families
5a. IS701 family
5b. ISH3 family
5c. IS1634 family
6. IS5 and related IS1182 families
7. IS6 family [updated on 05/21/22]
8. IS21 family
9. IS30 family [updated on 05/21/22]
10. IS66 family
11. IS110 and IS1111 families
12. IS256 family
13. IS630 family
14. IS982 family
15. IS1202 family [New Family - under construction]
16. IS1380 family
17. ISAs1 family
18. ISL3 family
19. ISAzo13 family
20. IS607 family
21. IS91 and related ISCR families
22. IS200/IS605 family [updated on 02/21/22]


Quick Access Table: Main Characteristics and Summary of Each IS family and Sub-Groups

Characteristics of insertion sequence families. Abbreviations: DR, duplication repeat; IS, insertion sequence; ORF, open reading frame.
Families Sub-Groups Typical size-range (bp) DR (bp) Ends IRs No ORFs Frameshift Catalytic residues Mechanism
IS1 740–1180 8–9 GGnnnTG Y 2 ORFAB DDE copy-and-paste and cointegrate
single ORF 800–1200 0–9 N 1
ISMhu11 900–4600 0–10 Y 2 ORFAB
IS1595 ISPna2 1000–1150 8 GGCnnTG Y 1 DDNK copy-and-paste (?)
ISPna2+pass 1500–2600 8 1+pass
ISH4 1000 8 CGCTCTT 1 DDNK
IS1016 700–745 7–9 GGGgctg DDEK
IS1595 900–1100 8 CcTGATT DDNK+ER4R7
ISSod11 1000–1100 8 nnnGcnTATC DDHK+ER4R7
ISNwi1 1080–1200 8 ggnnatTAT DDEK+ER4
ISNwi1+pass 1750–4750 8 1+pass
ISNha5 3450–7900 8 CGGnnTT 1 DDER/K
IS3 IS150 1200–1600 3–4 TG Y 2 ORFAB DDE copy-and-paste
IS407 1100–1400 4 TG
IS51 1000–1400 3–4 TG
IS3 1150–1750 3–4 TGa/g
IS2 1300–1400 5 TG
IS481 950–1300 4–15 TGT Y 1 DDE copy-and-paste (?)
IS4 IS10 1200–1350 9 CT Y 1 DDE hairpin intermediate cut-and-paste
IS50 1350–1550 8–9 C hairpin intermediate
ISPepr1 1500–1600 7–8 -T-AA ?
IS4 1400–1600 10–13 -AAT ?
IS4Sa 1150–1750 8–10 CA ?
ISH8 1400–1800 10 ?
IS231 1450–5400 10–12 CAT 1 or + * *passenger genes
IS701 1400–1550 4 Y 1 DDE
ISAba11
ISH3 1225–1500 4–5 C-GT Y 1 DDE
IS1634 1500–2000 5–6 C Y 1 DDE
IS5 IS903 950–1150 9 GG Y 1 DDE
ISL2 850–1200 2–3
ISH1 900–1150 8 -GC
IS5 1000–1500 4 Ga/g
IS1031 850–1050 3 GAa/g
IS427 800–1000 2–4 Ga/g 2 ORFAB
IS1182 1330–1950 0–60 Y 1 DDE
IS6 700–900 8 GG Y 1 DDE co-integrate
IS21 1750–2600 4–8 TG Y 2 * DDE
IS30 1000–1700 2–3 Y 1 DDE copy-and-paste
IS66 2000–3000 8–9 GTAA Y 3* DDE*
ISBst12 1350–1900 1 DDE
IS256 1200–1500 8–9 Ga/g Y 1 DDE copy-and-paste
IS1249 1300 0–10 GG
ISC1250 1250 0–9 GG
ISH6 1450 8 GGT Y 1 DDE
ISLre2 1500–2000 9 Y 1 DDE
ISKra4 ISAzba1 1400–2900 0 Y 1 or + * DDE
ISMich2 1250–1400 8 GGG 1 or 2 ORFAB
ISKra4 1400–3700 9 GGG 1 or + *
IS630 1000–1400 2* Y 1 or 2 ORFAB DDE cut-and-paste
IS982 1000 3–9 AC Y 1 DDE
IS1380 1550–2000 4–5 CC Y 1 DDE
ISAs1 1200–1500 8–10 CAGGG Y 1
ISL3 1300–2300 8 GG Y 1
Tn3 >3000 0 GGGG Y >1 DDE co-integrate
ISAzo13 1250–2200 0–4 Ga/g Y 1
IS110 1200–1550 0 N 1 DEDD
IS1111 Y*
IS91 1500–2000 0 N 1 HUH/Y2 rolling-circle
IS200/IS605 IS200 600–750 0 0 1* HUH/Y1 peel-and-paste
IS605 1300–2000 2* HUH/Y1**
IS607 1700–2500 0 N 2* Serine**
IS1202 1400–1700 5 TGT Y 1 DDE
ISNCY * IS892 1600 0–8 CTAG Y 2 ORFAB
ISLbi1 1400–1500 5 Y 1
ISMae2 1400–2400 9 CAG Y 1
ISPlu15 800–1000 0 N 1
ISA1214 1000–1200 8–12 Y 2
ISC1217 1200 6–8 TAG Y 1
ISM1 1300–1600 8–9 Y 1
ISDol1 1600–1900 6–7 Y 1 DDE
* ISNCY = Insertion Sequence Not Classified Yet