ISXo5

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE013598 ND Xanthomonas oryzae
Xanthomonas oryzae pv. oryzae KACC10331
DNA section
IS Length : 1058 bp

Ends


IR Length : 21/23

IRL : CCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCG
IRR : CCTGATTAGCACGCACTTTCAGCGGTGAACATGGTGACATCACGCAGGGC

Insertion site


Left flankDirect repeatRight flankDR Length
CCATGCGACATTCCCCCTTGTTGATCGA8

DNA sequence

CCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGCTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATC
GTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGCGCTATGGCAACGCGCAGCAGTGCGAGCAGGCGTTGGAGATCTCGCGCTGGCCACA
GGGCTTTGTTTGTCCGCGTTGCGTCGCTACCGCGCACAGTCGATTCCAGCGTCACGGCACCACGTACTGGCAGTGCACGGCCTGCTATCGCCAGACCAGC
CTGCGCTCGGGCACGGTGATGGACAACAGCAAGCTGCCGCTACGCACCTGGCTGCTTGGCATGTATCTGCTGGGCCAGAGCAAGACGAACCTGTCGGCGC
TGGAGTTGATGCGACACCTGGGAGTGAGCTACCCGACAGCGTGGCCAATGAAGCACAAGCTGATGCAGGCCATGACCCAACGCGAGGCGAACCGCAAGTT
GGGCGGGATCGTGCAACTGGACGATGCCTACCTGGGCGGAGAACGCAACGGTGGCAAGGCCGGGCGCGGCTCGGAGAACAAGCGCCCTTTCGTGATCGCC
GTGGAGACCACTGAAGACGGTCGTCCATTGCGCGCGGTGATGGATCCGGTCCCAGGCTTCACCAAGGCGGCGCTGTCGGAATGGATCGGGCAACGCCTGC
ATCCTGGAGCAGATGTCTACAGTGATGGACTCGGTGCGTTTCGAGCACTGGAAGCCGAGCACGCGCACACGGTGATCGAAGGCAGCGGTCGAAGTCGCTG
CGAGGCAGAGAACGCACGCTGGGTCAACGTGGTGTTGTCCAACCTAAAGCGTTCGCTGGACGGTGCCTATCACGCCTTCAAATTCGCCAAATACGCCCAG
CGCTACCTGGCAGAGACGATGTGGCGGTTCAACCGCCGTTTCGATCTGACCCGGCTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGT
CCGAGCGGGCCCTGCGTGATGTCACCATGTTCACCGCTGAAAGTGCGTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa551053+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLGPSLHRDQIMAMNRVQFQAGLSLPAFLKRYGNAQQCEQALEISRWPQGFVCPRCVATAHSRFQRHGTTYWQCTACYRQTSLRSGTVMDNSKLPLRTWL
LGMYLLGQSKTNLSALELMRHLGVSYPTAWPMKHKLMQAMTQREANRKLGGIVQLDDAYLGGERNGGKAGRGSENKRPFVIAVETTEDGRPLRAVMDPVP
GFTKAALSEWIGQRLHPGADVYSDGLGAFRALEAEHAHTVIEGSGRSRCEAENARWVNVVLSNLKRSLDGAYHAFKFAKYAQRYLAETMWRFNRRFDLTR
LVPSLLAAAAASKPWSERALRDVTMFTAESAC

 

Blast result :
Comments
ISXo5 is 69% aa similar to IS1595.
References
1] Lee,B.M., Park,Y.J., Park,D.S., Kang,H.W., Kim,J.G., Song,E.S., Park,I.C., Yoon,U.H., Hahn,J.H., Koo,B.S., Lee,G.B., Kim,H., Park,H.S., Yoon,K.O., Kim,J.H., Jung,C.H., Koh,N.H., Seo,J.S. and Go,S.J. (2005) Nucleic Acids Res. 33 (2), 577-586