ISXo2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AF225215 | Y | Xanthomomas oryzae | Xanthomonas oryzae pv. oryzae BXO125 Xanthomomas oryzae pv oryzae BXO112 Xanthomonas oryzae pv. oryzae BXO119 Xanthomonas oryzae pv. oryzae BXO121 Xanthomonas oryzae pv. oryzae BXO123 |
DNA section
IS Length : 1070 bp
Ends
IR Length : 24
IRL : CCTGATTAGCCCCATCCCTCAGCCGTAGTTGCAGGATCTGCACGCTGCGG
IRR : CCTGATTAGCCCCATCCCTCAGCCATGGAAGTTGCTTGCCATACGCAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
CCTGATTAGCCCCATCCCTCAGCCGTAGTTGCAGGATCTGCACGCTGCGGTTGGACAATGACCCCAGCTCAAGGCAACGGAGGTGGGAGATGGGCATCAA
TCTCGTGCAGTTTCAGCCAGGCTTGTCGCTGAGCGAGTTCATGGATCGCTACGGAACCGAAGCCAAGTGTTACCGGGCGTTGTATCGGTGGCGCTGGCCG
AAGGGATTTCGCTGCCCGCAGTGCGACGGCCGCGCGCGCTCGCGCTTTCGACGCGCTGATCAGGTCTACTACCAGTGCCGGGCGTGCCGGCATCAAACCA
CCTTGCGTGCCGGCACGCTGTTGCAATCCAGCAAGCTGTCTTTGCGCCTGTGGATGCAGGCGATGTACCTGTTGACCTCCAGCAAGACCAACCTGGCAGC
ACTGGAGTTGAAGCGGCATCTTGGGGTGACCTACAAGGCGGCCTGGCGCATGAAGCACAAGATCATGCAGGCGATGACCGAGCGCGAAGAACCGCGAAAA
CTCAAGGGATTCGTGCAGATCGATGACGCGTATCTGGGCGGTGAACGCAGCGGCGGCAAGCGCGGACGAGGTTCGGAGAACAAACAGCCGTTCGTGATCG
CGGTGCAAGTGGACCACAGCCACGAACACCCCGTCTTTGCGGTGATCGAGCCGGTGAAGGCCTTTGACAACGCCTCGCTGGAGGACTGGATCGCGCGCCG
TCTGGAGCCGGAGTGTGAGGTCTATAGCGACGGCCTGGCGTGCTTTCGCCGTCTGGAGGAGGCCGGGCATGCCCACACCACGCTCGATACCGGCGGCGGT
CGTGCTGCAACCGACGTCCAGGGAGCACGTTGGTTGAATGTGGTGCTGGGCAATGTCAAACGCGCCATCAGCGGGACCTACCATGCGGTGGGCCAGGCCA
AGTATGCAAGGCGCTACCTGGCCGAGGCGGCCTATCGCTTCAACCGCCGATTCGACCTGAAACAGATGCTGCCGCGGCTGGCGACGGCACTGCTGCGCTG
CACACCTTGCCCAGAGCGCGTTTTGCGTATGGCAAGCAACTTCCATGGCTGAGGGATGGGGCTAATCAGG
TCTCGTGCAGTTTCAGCCAGGCTTGTCGCTGAGCGAGTTCATGGATCGCTACGGAACCGAAGCCAAGTGTTACCGGGCGTTGTATCGGTGGCGCTGGCCG
AAGGGATTTCGCTGCCCGCAGTGCGACGGCCGCGCGCGCTCGCGCTTTCGACGCGCTGATCAGGTCTACTACCAGTGCCGGGCGTGCCGGCATCAAACCA
CCTTGCGTGCCGGCACGCTGTTGCAATCCAGCAAGCTGTCTTTGCGCCTGTGGATGCAGGCGATGTACCTGTTGACCTCCAGCAAGACCAACCTGGCAGC
ACTGGAGTTGAAGCGGCATCTTGGGGTGACCTACAAGGCGGCCTGGCGCATGAAGCACAAGATCATGCAGGCGATGACCGAGCGCGAAGAACCGCGAAAA
CTCAAGGGATTCGTGCAGATCGATGACGCGTATCTGGGCGGTGAACGCAGCGGCGGCAAGCGCGGACGAGGTTCGGAGAACAAACAGCCGTTCGTGATCG
CGGTGCAAGTGGACCACAGCCACGAACACCCCGTCTTTGCGGTGATCGAGCCGGTGAAGGCCTTTGACAACGCCTCGCTGGAGGACTGGATCGCGCGCCG
TCTGGAGCCGGAGTGTGAGGTCTATAGCGACGGCCTGGCGTGCTTTCGCCGTCTGGAGGAGGCCGGGCATGCCCACACCACGCTCGATACCGGCGGCGGT
CGTGCTGCAACCGACGTCCAGGGAGCACGTTGGTTGAATGTGGTGCTGGGCAATGTCAAACGCGCCATCAGCGGGACCTACCATGCGGTGGGCCAGGCCA
AGTATGCAAGGCGCTACCTGGCCGAGGCGGCCTATCGCTTCAACCGCCGATTCGACCTGAAACAGATGCTGCCGCGGCTGGCGACGGCACTGCTGCGCTG
CACACCTTGCCCAGAGCGCGTTTTGCGTATGGCAAGCAACTTCCATGGCTGAGGGATGGGGCTAATCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 963 bp | 320 aa | 90 | 1052 | + | No |
Chemistry : DDE
ORF sequence :
MGINLVQFQPGLSLSEFMDRYGTEAKCYRALYRWRWPKGFRCPQCDGRARSRFRRADQVYYQCRACRHQTTLRAGTLLQSSKLSLRLWMQAMYLLTSSKT
NLAALELKRHLGVTYKAAWRMKHKIMQAMTEREEPRKLKGFVQIDDAYLGGERSGGKRGRGSENKQPFVIAVQVDHSHEHPVFAVIEPVKAFDNASLEDW
IARRLEPECEVYSDGLACFRRLEEAGHAHTTLDTGGGRAATDVQGARWLNVVLGNVKRAISGTYHAVGQAKYARRYLAEAAYRFNRRFDLKQMLPRLATA
LLRCTPCPERVLRMASNFHG
NLAALELKRHLGVTYKAAWRMKHKIMQAMTEREEPRKLKGFVQIDDAYLGGERSGGKRGRGSENKQPFVIAVQVDHSHEHPVFAVIEPVKAFDNASLEDW
IARRLEPECEVYSDGLACFRRLEEAGHAHTTLDTGGGRAATDVQGARWLNVVLGNVKRAISGTYHAVGQAKYARRYLAEAAYRFNRRFDLKQMLPRLATA
LLRCTPCPERVLRMASNFHG
Blast result :
Comments
ISXo2 was isolated as insertion in the gumM gene. Its tranposase exhibits 46% similarity with that of ISH4. The termination codon is located within IRR. Probably appromately 9 copies in the host strain.
References
1] Ray SK, Rajeshwari R, Sonti RV.(2000) Mol Plant Microbe Interact13 (4) : 394-401.