ISXca4

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003902 ND Xanthomonas campestris
Xanthomonas campestris pv. campestris ATCC 33913
DNA section
IS Length : 1072 bp

Ends


IR Length : 21/24

IRL : CCTGATTAGCCCTGACCTTCAGCCGCAAGTCGCAGGATCTGCGCCGCGCC
IRR : CCTGATTAGCCCCGACTCTCAGCCATGGAAATTGCTCGCTGCACGCAACA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTTGCCAGCTCTTCTTGAGATATGTCGCGC8

DNA sequence

CCTGATTAGCCCTGACCTTCAGCCGCAAGTCGCAGGATCTGCGCCGCGCCTTGTGGATGCTGCTGTCACTCGAAGCCAATGAGGTGGCCTGATGAGCATC
AATGCCGTGCAGTTCCAAGCGGGATTGTCGATGCCTGAGTTCTTCGCGTCCTACGGCACCGAGGCCAAGTGTTATCGCGCGCTCTACAAGTGGCGTTGGC
CGCAGGGCTTTCGTTGCCCTGTTTGTGCCGGGCGCGTGCGCTCGCGTTTCAAGCGGGGTGCTGCGATCTACTACCAATGCAGCGCGTGCCGACATCAGAC
CAGTCTGATGGCAGGCACGATGTTCGAAGGCACCAAACTGCCGCTTCGCACCTGGATGCTGGCGTTGCACCTGCTGACCTCGACCAAAACCAACATGGCC
GCGCTGGAGCTGATGCGCCATCTGGGGGTGAACTACAAGAGCGCCTGGCGGATGAAACACAAGATCATGCAGGTCATGGCCGAGCGCGAATCCACGCGGA
AACTGGCGGGTTTCGTGCAGATCGACGATGCCTACCTGGGCGGTGAGCGCAACGGTGGCAAGGCTGGACGCGGATCGGAAAACAAACAATCGTTCCTGAT
CGCGGTGCAGACCGATGACACCTTCACCGCACCGCGCTTTGTGGTGATCGAGCCGGTGCGCAGCTTCGATAACCCCTCGCTGCAAGACTGGATTGCCCGT
CGCCTGGCGCCCGGGTGCGAGGTCTACACCGATGGGTTGGCCTGCTTCCGTCGGCTGGAGGATGCCGGTCACGCGCACACCACACTCGATACCAGTGGCG
GGCGTGCCGCGACCGAAGCAACCGGTGCGCGTTGGGTCAACGTGGTGCTTGGCAATCTCAAACGCGCCATCAGCGGCGTGTATCACGCCATCGCGCAAGG
CAAATACGCAAAGCGTTACCTGGCCGAAGCCGCCTACCGTTTCAATCGTCGATTCCGCTTGCGCGAGATGCTGCCACGACTTGCCACGGCCATGATGCAA
TCCACACCATGTCCAGAACCGGTGTTGCGTGCAGCGAGCAATTTCCATGGCTGAGAGTCGGGGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
963 bp320 aa921054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSINAVQFQAGLSMPEFFASYGTEAKCYRALYKWRWPQGFRCPVCAGRVRSRFKRGAAIYYQCSACRHQTSLMAGTMFEGTKLPLRTWMLALHLLTSTKT
NMAALELMRHLGVNYKSAWRMKHKIMQVMAERESTRKLAGFVQIDDAYLGGERNGGKAGRGSENKQSFLIAVQTDDTFTAPRFVVIEPVRSFDNPSLQDW
IARRLAPGCEVYTDGLACFRRLEDAGHAHTTLDTSGGRAATEATGARWVNVVLGNLKRAISGVYHAIAQGKYAKRYLAEAAYRFNRRFRLREMLPRLATA
MMQSTPCPEPVLRAASNFHG

 

Blast result :
Comments
ISXca4 is 96% aa similar to IS1595.
References
1]da Silva,A.C.R., Ferro,J.A., Reinach,F.C., Farah,C.S., Furlan,L.R., Quaggio,R.B., Monteiro-Vitorello,C.B., Van Sluys,M.A., Almeida,N.F. Jr., Alves,L.M.C., do Amaral,A.M., Bertolini,M.C., Camargo,L.E.A., Camarotte,G., Cannavan,F., Cardozo,J., Chambergo,F., Ciapina,L.P., Cicarelli,R.M.B., Coutinho,L.L., Cursino-Santos,J.R., El-Dorry,H., Faria,J.B., Ferreira,A.J.S., Ferreira,R.C.C., Ferro,M.I.T., Formighieri,E.F., Franco,M.C., Greggio,C.C., Gruber,A., Katsuyama,A.M., Kishi,L.T., Leite,R.P. Jr., Lemos,E.G.M., Lemos,M.V.F., Locali,E.C., Machado,M.A., Madeira,A.M.B.N., Martinez-Rossi,N.M., Martins,E.C., Meidanis,J., Menck,C.F.M., Miyaki,C.Y., Moon,D.H., Moreira,L.M., Novo,M.T.M., Okura,V.K., Oliveira,M.C., Oliveira,V.R., Pereira,H.A. Jr., Rossi,A., Sena,J.A.D., Silva,C., de Souza,R.F., Spinola,L.A.F., Takita,M.A., Tamura,R.E., Teixeira,E.C., Tezza,R.I.D., Trindade dos Santos,M., Truffi,D., Tsai,S.M., White,F.F., Setubal,J.C. and Kitajima,J.P.(2002) Nature 417 (6887), 459-463