ISStma11

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010943 ND Stenotrophomonas maltophilia
Stenotrophomonas maltophilia K279a
DNA section
IS Length : 4621 bp

Ends


IR Length : 20/23

IRL : GGGTATCCGGAATCTGGTGTGGGTTCTGGCTCCTTGGGTCTTTGTAGCTA
IRR : GGGTATCCGGATTTTAGTGTGGGAAGACCGCACTAGCCCTTCTTGTCTGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCGACATCCTAAAAAAAGCCGCGGCGTA8

DNA sequence

GGGTATCCGGAATCTGGTGTGGGTTCTGGCTCCTTGGGTCTTTGTAGCTATCACTTTCAAAGAATGGATTTTGGTGTTGGACGGCTGAGCGGATGTGCTA
GAGTAAAAGTCGGATTTCAGTGTGGGTTCGCCCAAGGTGCTGAGTGACGGACTTTCTCCAGCTGCGAAGCCTGAAGACGCTTGAAATCCTGACCAGCGAG
GACAGTTACGTCGTCAAGGCCGAAGGCGTCAATCAGTGGGTGACCTGCCCGCTGTGCAAGACCGGATGCCTGCATGGTCACGGCTCACAGGAACAGTCGT
TTCAGGACACACCGACGCACGGCAAACCCGTCGTGATCTTCATCCAGCGCCGTCGCTATCGCTGTACAAGCTGCACCAAGACCTTGTTTGAGCCTGTGGC
GGACCTTGATGGAAAACGCCAAGCCACGGCGCGTCTGGTGCGTTATATCCGCGACCAGTCCTTCTCCAAGACCTTTGCGGCCCTTGCCCGGGAAGTAGCC
GTGGAAGAAAAGACGGTCCGCCACGTCTTCGACGATTTCATCGAGGAGGTCGAGGCCAAGACCCAGTTCCGGACGCCGCGGGTGCTGGGTATCGACGAGC
TCAAGATCATCGGCCAGTACCGGGCCATGATCACCAACGTCGAGCGCAAGACCGTGTTCGATATCCGCCCCAGCCGGGCCAAAGCCGAGTTGATGCCCTA
TTTCCGCGACCTGCGGGACAAGGACTCGGTCGAGTGGGTGGCGATGGACATGTACCACGTTTATCGGCAGGTGGTGCGCGCCACGCTGCCACAGGCCCGG
ATCGTGGTCGATCGATTCCATATCCAGCGCATGGCGAACGACGCGCTGGAGAAGCTGCGCAAGCGCATTCGCAAGGATTTGTCCACCCGGCAGCGCCTCA
AACTCAAGGACGAGCGGTTCCTGCTGCTCAAGCGGCAGCACGACCTGACAGGGAGAGATATGGACCGGATGCGGGAATGGTTCCAACAGTTCCCGCTCCT
AAGCGAAGCCCACGCGCTCAAGGAAGGATTTCTGTCGATCTGGGATCAGAAGACCCGCCCAGCAGCAGAAGCCGCCTGCGCGAAGTGGCAGGCCAATATT
CCGACCGAATTGGCGGCCACGTTCAAGGACCTGACCACCGCCGTGCACAACTGGCACGACGAAATCTTCGCCTACTTCGAGCAGCCGATTACCAATGCCT
ATACTGAGTCAGTCAACCGAGTGGCCAAAGACATGAACCGCATGGGCAGGGGTTACAGCTTCGAGGTGCTTCGGGCGCGCATGCTCTACGACAAGAAGGC
GCGCAAGGATGGCTCGGTTATCGAAACCGTGTTGGTCGATGACGACGACCCAATGACCACGGACTTCGTGTTCCAGCGGATGACCACGGCGGCAACGCGC
AAGAAGAAGATCACGCGCGTGGTCGAGTACGGCCCCTATCTCCCGACGCTGGCGCGGCTACTCGAAGAGGGGTATTTCGAATAGTCCTCAACCCATTGTG
CAAGAGGCGGCGCTTCAGCCTGAATTTGTGATTCAGCCGATGAAGCATAGGTAAGAGGCCCAGCCACTACCCCGCGCAACAGGACAGTTGCTTTACGTCC
TTGGTGAAGGTTTGTGCCGCGAGTTTCAGCCCCTCGACCATCGTCAGGTAGGGGAATAACTGGTCGGCCAACTCTCGCACCGTCATGCGGTTGCGAATCG
CCAGTACTGCGGTTTGGATCAGCTCGCCTGCTTCCGGGGCTACCGCTTGCACGCCGATCAGTCGTCCCGAACCGGCCTCCGAAACCAGCTTGATGAAACC
GCGCGTGTCGAAGTTGACCAGCGCCCGGGGCACGTTGTCGAGCGTCAGCGTGCGGCTGTCGGTCTCGATACCGTCGTGGTGCGCTTCGGCTTCGCTGTAG
CCCACGGTGGCGACCTGCGGGTCGGTGAACACCACCGCCGGCATCGCCGTCAGATCCAGCGTCGCGTTGCCACCCGTCATGTTGATTGCAGCGCGGGTGC
CGGCCGCCGCCGCGACGTAGACGAACTGCGGCTGGTCAGTGCAGTCGCCGGCGGCATAGATGTGCGGCACGGTAGTGCGCATCGCGTGGTCGATGGTGAT
GGCGCCTTGCGCATTGACCACCACACCGGCCGCGTCGAGGTTGAGCGTGCGGGTGTTTGGGGTGCGGCCGGTGGCGAACAACAGCCGGTCGGCATGCAGT
TCGCCGCGTTCGGTGGTGAGCACGAATTCCCCATCCTCATAGGCGACCTGGCTGGCCTGGGTGTGGTCCAGCACTTCGATGCCTTCGGCGCGGAACACGG
CCGTGATGGCCTCGCCAATGGCGGGGTCTTCGCGAAAGAACAGTGTGCTGCGCGCCAGCATGGTCACCTTGCTGCCCAGCCGGGCAAAGGCCTGCGCGAG
TTCGACGGCCACCACCGACGAGCCGATCACGGCCAGCCGATCGGGGATCGTGTCGCTGGCCAGCGCTTCGGTCGACGTCCAGAAGGGCGTGTCTTTCAAG
CCCGGGATCGGTGGAATCGCCGGACTGGCCCCGGTGGCGATGAGGCAGCGGTCGAAACTCACCTCGCGCATCCCGTCGTCAGCGGTTGCCACGGTCAGCG
TGTGCGCATCCTTGAATCGGGCATCGCCGCGCAGCACGGTGATGGTCGGGGTGCTCGTCAGGATGCCTTCGTACTTGGCGTGGCGCAGTTCATCGACGCG
CCCCTGCTGCTGAGCCAGCAAGCGCTTGCGCAGAATCTTCGGCGAGGCGGCGGCAATGCCGTCATCGAACGGACTCTCGCGACGCAGATGCGCAATGTGG
GCAGCGCGGATCATGATCTTGGACGGCACACATCCGACGTTGACGCAGGTGCCGCCGAGAGTGCTGCGCTCGATCAGCGTCACACGCGCCCCTTGCTCGA
CGGCCTTCAACGCCGCCGCCATCGCCGCGCCGCCGCTGCCGATCACGGCCACGTGCAGTGCAGCCTCATCGTCCTCGCGCTTTGGTTCGCCGCCCAGCCG
CTCTTGTGCATTGTTCAGCAGGTCGCTGGGTTGCCCCGGCGCATCGGCAAGCTGCGCTCGGTAACCGAGTGCGGATACCGCCGCGACCAGCGAGGTCACG
TCCGCGGCGGTACCTACGCTGGCCTCAATCTCGGCCCGGCGCTGTGGGTAGGACACTGAGGCCGAACGCACGCCGGGCACCTTTTCCAAGGTCTGCTTGA
CGTGCTCGGCGCACGACCCGCAGGTCATGCCATCGATGTGCAGCGTGATCGCCTCGGTCATGAGCGTGTGCTCACTTCTTGACGGTAGACGGGTAGCCGG
CGTTCTCGGTGGCTTTGGTCAACGCGGCCGGAGTGGTCTTGGCATCGTCGTAGGTTACCACCGCCTCCTTGGGCTCCCAGGTCACCTTGGCCTCGATGAC
GCCTTCGACCTTGGTCAGCGCCTTCTTGACCGTGATCGGACAGGTGGCGCAGGTCATGCTCGGCACCGACAGCGTGACGGTTTTGGTGGCGGCCCAGGCG
GGAGCGCTGAGGGCAACGGTCAGAGCGAGCAATGCGACGAGTTTCTTCATGGCAATCTCCTTTCAGTAGAACAGGGGCATGAGGTAGGGGAACACGAGCG
CGATCAGCACCAGAGCGGTGAAGATCCAGAAGATCACCTTGTAGGCCGTCCGCACCTGGGGCACGGCGCATGCGTCGTCCGGCGCGCAGGCGCGAGCCGG
CCGGAAGATGCGACGCCACGCGAAGAACAGCGCCACGAGCGCCACGCCAATGAAGATCGGCCGGTACGGTTCCAGCGCGGTCAAGTTGCCGATCCAGGCG
CCGGAGAAACCCAGCGTGATCAGCACCAGCGGACCGAGGCAGCAGGTCGAGGCGAGGATGGCGGCGAGGCCACCGGCGGCCAGTGCACCGCGGCCGTTGC
TGGGGTCTGCCATGTGAGGGATCTCCTTCCGAGACGTTGCGTGATGCGCTAAGGTTACTTCCGTAGTCAAGTACGGAGTCAAGCGCGATGGTGAACGATC
CGCAAACACTGACCATCGGGGCTTTCGCCAAGGCCGCTGGGGTCAACGTGGAGACCATCCGGTTCTATCAGCGCAAGGGGTTATTGCCAGAACCAGGTCG
GCCCGTCGGCAGTATTCGCCGCTACGGATCGGCGGACGTGGCGCGGGTGCGTTTCGTGAAATCCGCCCAGCGGCTGGGGTTCAACCTGGACGAAGTCGGC
CAACTCCTACAGCTTGAGGACGGCACTCACTGCAGCGAAGCCGCCGAGCTGGCTGCGCTCCAGCTCACCGACGTGCGCACCAAGATGGCGGACCTGACGC
GAATCGAAGCGGTGCTGTCACGGTTGGTCAACGAGTGCCATGCGCAGCGAGGCACTGTGTCGTGCCCGCTGATCGATTCTCTGCACGGGAGCTAGGCGCG
TGGCTTAACCCGGTTTTCCGTTCCACTGCGCCTCAAACCCCAGTTCGAGCCGGGGGCAAGGTGACCTGCCACTGATTGTTTCCTTGCACCGACATGCGCC
AGACAAAGCCCACACTGAAGGCTAAAAGCGCGTAAGACTTGCGATACCAGAAACCTACCGAACGAGAGCTGTCAGACAAGAAGGGCTAGTGCGGTCTTCC
CACACTAAAATCCGGATACCC
Protein section
ORF number : 5

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa1441484+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTDFLQLRSLKTLEILTSEDSYVVKAEGVNQWVTCPLCKTGCLHGHGSQEQSFQDTPTHGKPVVIFIQRRRYRCTSCTKTLFEPVADLDGKRQATARLVR
YIRDQSFSKTFAALAREVAVEEKTVRHVFDDFIEEVEAKTQFRTPRVLGIDELKIIGQYRAMITNVERKTVFDIRPSRAKAELMPYFRDLRDKDSVEWVA
MDMYHVYRQVVRATLPQARIVVDRFHIQRMANDALEKLRKRIRKDLSTRQRLKLKDERFLLLKRQHDLTGRDMDRMREWFQQFPLLSEAHALKEGFLSIW
DQKTRPAAEAACAKWQANIPTELAATFKDLTTAVHNWHDEIFAYFEQPITNAYTESVNRVAKDMNRMGRGYSFEVLRARMLYDKKARKDGSVIETVLVDD
DDPMTTDFVFQRMTTAATRKKKITRVVEYGPYLPTLARLLEEGYFE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1695 bp564 aa32611567-No
ORF function : Passenger Gene
Annotation : MerADescription :

ORF sequence :

MTEAITLHIDGMTCGSCAEHVKQTLEKVPGVRSASVSYPQRRAEIEASVGTAADVTSLVAAVSALGYRAQLADAPGQPSDLLNNAQERLGGEPKREDDEA
ALHVAVIGSGGAAMAAALKAVEQGARVTLIERSTLGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDDGIAAASPKILRKRLLAQQQGRVDELRHAKYEGI
LTSTPTITVLRGDARFKDAHTLTVATADDGMREVSFDRCLIATGASPAIPPIPGLKDTPFWTSTEALASDTIPDRLAVIGSSVVAVELAQAFARLGSKVT
MLARSTLFFREDPAIGEAITAVFRAEGIEVLDHTQASQVAYEDGEFVLTTERGELHADRLLFATGRTPNTRTLNLDAAGVVVNAQGAITIDHAMRTTVPH
IYAAGDCTDQPQFVYVAAAAGTRAAINMTGGNATLDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALVNFDTRGFIKLVSEAGSGR
LIGVQAVAPEAGELIQTAVLAIRNRMTVRELADQLFPYLTMVEGLKLAAQTFTKDVKQLSCCAG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
279 bp92 aa35503272-No
ORF function : Passenger Gene
Annotation : MerPDescription :

ORF sequence :

MKKLVALLALTVALSAPAWAATKTVTLSVPSMTCATCPITVKKALTKVEGVIEAKVTWEPKEAVVTYDDAKTTPAALTKATENAGYPSTVKK

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
348 bp116 aa39133566-No
ORF function : Passenger Gene
Annotation : MerTDescription :

ORF sequence :

MADPSNGRGALAAGGLAAILASTCCLGPLVLITLGFSGAWIGNLTALEPYRPIFIGVALVALFFAWRRIFRPARACAPDDACAVPQVRTAYKVIFWIFTA
LVLIALVFPYLMPLFY

 

Blast result :
ORF 5
LengthBeginEndStrandFusion ORF
408 bp135 aa39884395+No
ORF function : Passenger Gene
Annotation : MerRDescription :

ORF sequence :

MVNDPQTLTIGAFAKAAGVNVETIRFYQRKGLLPEPGRPVGSIRRYGSADVARVRFVKSAQRLGFNLDEVGQLLQLEDGTHCSEAAELAALQLTDVRTKM
ADLTRIEAVLSRLVNECHAQRGTVSCPLIDSLHGS

 

Blast result :
Comments
ISStma11 is 60% aa similar to ISPst9. This IS had a mercuric operon as passengers genes. ORFB is MerA, ORFC is MerP, ORFD is MerT and ORFE is MerR.
References
1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74