ISStma11
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010943 | ND | Stenotrophomonas maltophilia | Stenotrophomonas maltophilia K279a |
DNA section
IS Length : 4621 bp
Ends
IR Length : 20/23
IRL : GGGTATCCGGAATCTGGTGTGGGTTCTGGCTCCTTGGGTCTTTGTAGCTA
IRR : GGGTATCCGGATTTTAGTGTGGGAAGACCGCACTAGCCCTTCTTGTCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGACATCCT | AAAAAAAG | CCGCGGCGTA | 8 |
DNA sequence
GGGTATCCGGAATCTGGTGTGGGTTCTGGCTCCTTGGGTCTTTGTAGCTATCACTTTCAAAGAATGGATTTTGGTGTTGGACGGCTGAGCGGATGTGCTA
GAGTAAAAGTCGGATTTCAGTGTGGGTTCGCCCAAGGTGCTGAGTGACGGACTTTCTCCAGCTGCGAAGCCTGAAGACGCTTGAAATCCTGACCAGCGAG
GACAGTTACGTCGTCAAGGCCGAAGGCGTCAATCAGTGGGTGACCTGCCCGCTGTGCAAGACCGGATGCCTGCATGGTCACGGCTCACAGGAACAGTCGT
TTCAGGACACACCGACGCACGGCAAACCCGTCGTGATCTTCATCCAGCGCCGTCGCTATCGCTGTACAAGCTGCACCAAGACCTTGTTTGAGCCTGTGGC
GGACCTTGATGGAAAACGCCAAGCCACGGCGCGTCTGGTGCGTTATATCCGCGACCAGTCCTTCTCCAAGACCTTTGCGGCCCTTGCCCGGGAAGTAGCC
GTGGAAGAAAAGACGGTCCGCCACGTCTTCGACGATTTCATCGAGGAGGTCGAGGCCAAGACCCAGTTCCGGACGCCGCGGGTGCTGGGTATCGACGAGC
TCAAGATCATCGGCCAGTACCGGGCCATGATCACCAACGTCGAGCGCAAGACCGTGTTCGATATCCGCCCCAGCCGGGCCAAAGCCGAGTTGATGCCCTA
TTTCCGCGACCTGCGGGACAAGGACTCGGTCGAGTGGGTGGCGATGGACATGTACCACGTTTATCGGCAGGTGGTGCGCGCCACGCTGCCACAGGCCCGG
ATCGTGGTCGATCGATTCCATATCCAGCGCATGGCGAACGACGCGCTGGAGAAGCTGCGCAAGCGCATTCGCAAGGATTTGTCCACCCGGCAGCGCCTCA
AACTCAAGGACGAGCGGTTCCTGCTGCTCAAGCGGCAGCACGACCTGACAGGGAGAGATATGGACCGGATGCGGGAATGGTTCCAACAGTTCCCGCTCCT
AAGCGAAGCCCACGCGCTCAAGGAAGGATTTCTGTCGATCTGGGATCAGAAGACCCGCCCAGCAGCAGAAGCCGCCTGCGCGAAGTGGCAGGCCAATATT
CCGACCGAATTGGCGGCCACGTTCAAGGACCTGACCACCGCCGTGCACAACTGGCACGACGAAATCTTCGCCTACTTCGAGCAGCCGATTACCAATGCCT
ATACTGAGTCAGTCAACCGAGTGGCCAAAGACATGAACCGCATGGGCAGGGGTTACAGCTTCGAGGTGCTTCGGGCGCGCATGCTCTACGACAAGAAGGC
GCGCAAGGATGGCTCGGTTATCGAAACCGTGTTGGTCGATGACGACGACCCAATGACCACGGACTTCGTGTTCCAGCGGATGACCACGGCGGCAACGCGC
AAGAAGAAGATCACGCGCGTGGTCGAGTACGGCCCCTATCTCCCGACGCTGGCGCGGCTACTCGAAGAGGGGTATTTCGAATAGTCCTCAACCCATTGTG
CAAGAGGCGGCGCTTCAGCCTGAATTTGTGATTCAGCCGATGAAGCATAGGTAAGAGGCCCAGCCACTACCCCGCGCAACAGGACAGTTGCTTTACGTCC
TTGGTGAAGGTTTGTGCCGCGAGTTTCAGCCCCTCGACCATCGTCAGGTAGGGGAATAACTGGTCGGCCAACTCTCGCACCGTCATGCGGTTGCGAATCG
CCAGTACTGCGGTTTGGATCAGCTCGCCTGCTTCCGGGGCTACCGCTTGCACGCCGATCAGTCGTCCCGAACCGGCCTCCGAAACCAGCTTGATGAAACC
GCGCGTGTCGAAGTTGACCAGCGCCCGGGGCACGTTGTCGAGCGTCAGCGTGCGGCTGTCGGTCTCGATACCGTCGTGGTGCGCTTCGGCTTCGCTGTAG
CCCACGGTGGCGACCTGCGGGTCGGTGAACACCACCGCCGGCATCGCCGTCAGATCCAGCGTCGCGTTGCCACCCGTCATGTTGATTGCAGCGCGGGTGC
CGGCCGCCGCCGCGACGTAGACGAACTGCGGCTGGTCAGTGCAGTCGCCGGCGGCATAGATGTGCGGCACGGTAGTGCGCATCGCGTGGTCGATGGTGAT
GGCGCCTTGCGCATTGACCACCACACCGGCCGCGTCGAGGTTGAGCGTGCGGGTGTTTGGGGTGCGGCCGGTGGCGAACAACAGCCGGTCGGCATGCAGT
TCGCCGCGTTCGGTGGTGAGCACGAATTCCCCATCCTCATAGGCGACCTGGCTGGCCTGGGTGTGGTCCAGCACTTCGATGCCTTCGGCGCGGAACACGG
CCGTGATGGCCTCGCCAATGGCGGGGTCTTCGCGAAAGAACAGTGTGCTGCGCGCCAGCATGGTCACCTTGCTGCCCAGCCGGGCAAAGGCCTGCGCGAG
TTCGACGGCCACCACCGACGAGCCGATCACGGCCAGCCGATCGGGGATCGTGTCGCTGGCCAGCGCTTCGGTCGACGTCCAGAAGGGCGTGTCTTTCAAG
CCCGGGATCGGTGGAATCGCCGGACTGGCCCCGGTGGCGATGAGGCAGCGGTCGAAACTCACCTCGCGCATCCCGTCGTCAGCGGTTGCCACGGTCAGCG
TGTGCGCATCCTTGAATCGGGCATCGCCGCGCAGCACGGTGATGGTCGGGGTGCTCGTCAGGATGCCTTCGTACTTGGCGTGGCGCAGTTCATCGACGCG
CCCCTGCTGCTGAGCCAGCAAGCGCTTGCGCAGAATCTTCGGCGAGGCGGCGGCAATGCCGTCATCGAACGGACTCTCGCGACGCAGATGCGCAATGTGG
GCAGCGCGGATCATGATCTTGGACGGCACACATCCGACGTTGACGCAGGTGCCGCCGAGAGTGCTGCGCTCGATCAGCGTCACACGCGCCCCTTGCTCGA
CGGCCTTCAACGCCGCCGCCATCGCCGCGCCGCCGCTGCCGATCACGGCCACGTGCAGTGCAGCCTCATCGTCCTCGCGCTTTGGTTCGCCGCCCAGCCG
CTCTTGTGCATTGTTCAGCAGGTCGCTGGGTTGCCCCGGCGCATCGGCAAGCTGCGCTCGGTAACCGAGTGCGGATACCGCCGCGACCAGCGAGGTCACG
TCCGCGGCGGTACCTACGCTGGCCTCAATCTCGGCCCGGCGCTGTGGGTAGGACACTGAGGCCGAACGCACGCCGGGCACCTTTTCCAAGGTCTGCTTGA
CGTGCTCGGCGCACGACCCGCAGGTCATGCCATCGATGTGCAGCGTGATCGCCTCGGTCATGAGCGTGTGCTCACTTCTTGACGGTAGACGGGTAGCCGG
CGTTCTCGGTGGCTTTGGTCAACGCGGCCGGAGTGGTCTTGGCATCGTCGTAGGTTACCACCGCCTCCTTGGGCTCCCAGGTCACCTTGGCCTCGATGAC
GCCTTCGACCTTGGTCAGCGCCTTCTTGACCGTGATCGGACAGGTGGCGCAGGTCATGCTCGGCACCGACAGCGTGACGGTTTTGGTGGCGGCCCAGGCG
GGAGCGCTGAGGGCAACGGTCAGAGCGAGCAATGCGACGAGTTTCTTCATGGCAATCTCCTTTCAGTAGAACAGGGGCATGAGGTAGGGGAACACGAGCG
CGATCAGCACCAGAGCGGTGAAGATCCAGAAGATCACCTTGTAGGCCGTCCGCACCTGGGGCACGGCGCATGCGTCGTCCGGCGCGCAGGCGCGAGCCGG
CCGGAAGATGCGACGCCACGCGAAGAACAGCGCCACGAGCGCCACGCCAATGAAGATCGGCCGGTACGGTTCCAGCGCGGTCAAGTTGCCGATCCAGGCG
CCGGAGAAACCCAGCGTGATCAGCACCAGCGGACCGAGGCAGCAGGTCGAGGCGAGGATGGCGGCGAGGCCACCGGCGGCCAGTGCACCGCGGCCGTTGC
TGGGGTCTGCCATGTGAGGGATCTCCTTCCGAGACGTTGCGTGATGCGCTAAGGTTACTTCCGTAGTCAAGTACGGAGTCAAGCGCGATGGTGAACGATC
CGCAAACACTGACCATCGGGGCTTTCGCCAAGGCCGCTGGGGTCAACGTGGAGACCATCCGGTTCTATCAGCGCAAGGGGTTATTGCCAGAACCAGGTCG
GCCCGTCGGCAGTATTCGCCGCTACGGATCGGCGGACGTGGCGCGGGTGCGTTTCGTGAAATCCGCCCAGCGGCTGGGGTTCAACCTGGACGAAGTCGGC
CAACTCCTACAGCTTGAGGACGGCACTCACTGCAGCGAAGCCGCCGAGCTGGCTGCGCTCCAGCTCACCGACGTGCGCACCAAGATGGCGGACCTGACGC
GAATCGAAGCGGTGCTGTCACGGTTGGTCAACGAGTGCCATGCGCAGCGAGGCACTGTGTCGTGCCCGCTGATCGATTCTCTGCACGGGAGCTAGGCGCG
TGGCTTAACCCGGTTTTCCGTTCCACTGCGCCTCAAACCCCAGTTCGAGCCGGGGGCAAGGTGACCTGCCACTGATTGTTTCCTTGCACCGACATGCGCC
AGACAAAGCCCACACTGAAGGCTAAAAGCGCGTAAGACTTGCGATACCAGAAACCTACCGAACGAGAGCTGTCAGACAAGAAGGGCTAGTGCGGTCTTCC
CACACTAAAATCCGGATACCC
GAGTAAAAGTCGGATTTCAGTGTGGGTTCGCCCAAGGTGCTGAGTGACGGACTTTCTCCAGCTGCGAAGCCTGAAGACGCTTGAAATCCTGACCAGCGAG
GACAGTTACGTCGTCAAGGCCGAAGGCGTCAATCAGTGGGTGACCTGCCCGCTGTGCAAGACCGGATGCCTGCATGGTCACGGCTCACAGGAACAGTCGT
TTCAGGACACACCGACGCACGGCAAACCCGTCGTGATCTTCATCCAGCGCCGTCGCTATCGCTGTACAAGCTGCACCAAGACCTTGTTTGAGCCTGTGGC
GGACCTTGATGGAAAACGCCAAGCCACGGCGCGTCTGGTGCGTTATATCCGCGACCAGTCCTTCTCCAAGACCTTTGCGGCCCTTGCCCGGGAAGTAGCC
GTGGAAGAAAAGACGGTCCGCCACGTCTTCGACGATTTCATCGAGGAGGTCGAGGCCAAGACCCAGTTCCGGACGCCGCGGGTGCTGGGTATCGACGAGC
TCAAGATCATCGGCCAGTACCGGGCCATGATCACCAACGTCGAGCGCAAGACCGTGTTCGATATCCGCCCCAGCCGGGCCAAAGCCGAGTTGATGCCCTA
TTTCCGCGACCTGCGGGACAAGGACTCGGTCGAGTGGGTGGCGATGGACATGTACCACGTTTATCGGCAGGTGGTGCGCGCCACGCTGCCACAGGCCCGG
ATCGTGGTCGATCGATTCCATATCCAGCGCATGGCGAACGACGCGCTGGAGAAGCTGCGCAAGCGCATTCGCAAGGATTTGTCCACCCGGCAGCGCCTCA
AACTCAAGGACGAGCGGTTCCTGCTGCTCAAGCGGCAGCACGACCTGACAGGGAGAGATATGGACCGGATGCGGGAATGGTTCCAACAGTTCCCGCTCCT
AAGCGAAGCCCACGCGCTCAAGGAAGGATTTCTGTCGATCTGGGATCAGAAGACCCGCCCAGCAGCAGAAGCCGCCTGCGCGAAGTGGCAGGCCAATATT
CCGACCGAATTGGCGGCCACGTTCAAGGACCTGACCACCGCCGTGCACAACTGGCACGACGAAATCTTCGCCTACTTCGAGCAGCCGATTACCAATGCCT
ATACTGAGTCAGTCAACCGAGTGGCCAAAGACATGAACCGCATGGGCAGGGGTTACAGCTTCGAGGTGCTTCGGGCGCGCATGCTCTACGACAAGAAGGC
GCGCAAGGATGGCTCGGTTATCGAAACCGTGTTGGTCGATGACGACGACCCAATGACCACGGACTTCGTGTTCCAGCGGATGACCACGGCGGCAACGCGC
AAGAAGAAGATCACGCGCGTGGTCGAGTACGGCCCCTATCTCCCGACGCTGGCGCGGCTACTCGAAGAGGGGTATTTCGAATAGTCCTCAACCCATTGTG
CAAGAGGCGGCGCTTCAGCCTGAATTTGTGATTCAGCCGATGAAGCATAGGTAAGAGGCCCAGCCACTACCCCGCGCAACAGGACAGTTGCTTTACGTCC
TTGGTGAAGGTTTGTGCCGCGAGTTTCAGCCCCTCGACCATCGTCAGGTAGGGGAATAACTGGTCGGCCAACTCTCGCACCGTCATGCGGTTGCGAATCG
CCAGTACTGCGGTTTGGATCAGCTCGCCTGCTTCCGGGGCTACCGCTTGCACGCCGATCAGTCGTCCCGAACCGGCCTCCGAAACCAGCTTGATGAAACC
GCGCGTGTCGAAGTTGACCAGCGCCCGGGGCACGTTGTCGAGCGTCAGCGTGCGGCTGTCGGTCTCGATACCGTCGTGGTGCGCTTCGGCTTCGCTGTAG
CCCACGGTGGCGACCTGCGGGTCGGTGAACACCACCGCCGGCATCGCCGTCAGATCCAGCGTCGCGTTGCCACCCGTCATGTTGATTGCAGCGCGGGTGC
CGGCCGCCGCCGCGACGTAGACGAACTGCGGCTGGTCAGTGCAGTCGCCGGCGGCATAGATGTGCGGCACGGTAGTGCGCATCGCGTGGTCGATGGTGAT
GGCGCCTTGCGCATTGACCACCACACCGGCCGCGTCGAGGTTGAGCGTGCGGGTGTTTGGGGTGCGGCCGGTGGCGAACAACAGCCGGTCGGCATGCAGT
TCGCCGCGTTCGGTGGTGAGCACGAATTCCCCATCCTCATAGGCGACCTGGCTGGCCTGGGTGTGGTCCAGCACTTCGATGCCTTCGGCGCGGAACACGG
CCGTGATGGCCTCGCCAATGGCGGGGTCTTCGCGAAAGAACAGTGTGCTGCGCGCCAGCATGGTCACCTTGCTGCCCAGCCGGGCAAAGGCCTGCGCGAG
TTCGACGGCCACCACCGACGAGCCGATCACGGCCAGCCGATCGGGGATCGTGTCGCTGGCCAGCGCTTCGGTCGACGTCCAGAAGGGCGTGTCTTTCAAG
CCCGGGATCGGTGGAATCGCCGGACTGGCCCCGGTGGCGATGAGGCAGCGGTCGAAACTCACCTCGCGCATCCCGTCGTCAGCGGTTGCCACGGTCAGCG
TGTGCGCATCCTTGAATCGGGCATCGCCGCGCAGCACGGTGATGGTCGGGGTGCTCGTCAGGATGCCTTCGTACTTGGCGTGGCGCAGTTCATCGACGCG
CCCCTGCTGCTGAGCCAGCAAGCGCTTGCGCAGAATCTTCGGCGAGGCGGCGGCAATGCCGTCATCGAACGGACTCTCGCGACGCAGATGCGCAATGTGG
GCAGCGCGGATCATGATCTTGGACGGCACACATCCGACGTTGACGCAGGTGCCGCCGAGAGTGCTGCGCTCGATCAGCGTCACACGCGCCCCTTGCTCGA
CGGCCTTCAACGCCGCCGCCATCGCCGCGCCGCCGCTGCCGATCACGGCCACGTGCAGTGCAGCCTCATCGTCCTCGCGCTTTGGTTCGCCGCCCAGCCG
CTCTTGTGCATTGTTCAGCAGGTCGCTGGGTTGCCCCGGCGCATCGGCAAGCTGCGCTCGGTAACCGAGTGCGGATACCGCCGCGACCAGCGAGGTCACG
TCCGCGGCGGTACCTACGCTGGCCTCAATCTCGGCCCGGCGCTGTGGGTAGGACACTGAGGCCGAACGCACGCCGGGCACCTTTTCCAAGGTCTGCTTGA
CGTGCTCGGCGCACGACCCGCAGGTCATGCCATCGATGTGCAGCGTGATCGCCTCGGTCATGAGCGTGTGCTCACTTCTTGACGGTAGACGGGTAGCCGG
CGTTCTCGGTGGCTTTGGTCAACGCGGCCGGAGTGGTCTTGGCATCGTCGTAGGTTACCACCGCCTCCTTGGGCTCCCAGGTCACCTTGGCCTCGATGAC
GCCTTCGACCTTGGTCAGCGCCTTCTTGACCGTGATCGGACAGGTGGCGCAGGTCATGCTCGGCACCGACAGCGTGACGGTTTTGGTGGCGGCCCAGGCG
GGAGCGCTGAGGGCAACGGTCAGAGCGAGCAATGCGACGAGTTTCTTCATGGCAATCTCCTTTCAGTAGAACAGGGGCATGAGGTAGGGGAACACGAGCG
CGATCAGCACCAGAGCGGTGAAGATCCAGAAGATCACCTTGTAGGCCGTCCGCACCTGGGGCACGGCGCATGCGTCGTCCGGCGCGCAGGCGCGAGCCGG
CCGGAAGATGCGACGCCACGCGAAGAACAGCGCCACGAGCGCCACGCCAATGAAGATCGGCCGGTACGGTTCCAGCGCGGTCAAGTTGCCGATCCAGGCG
CCGGAGAAACCCAGCGTGATCAGCACCAGCGGACCGAGGCAGCAGGTCGAGGCGAGGATGGCGGCGAGGCCACCGGCGGCCAGTGCACCGCGGCCGTTGC
TGGGGTCTGCCATGTGAGGGATCTCCTTCCGAGACGTTGCGTGATGCGCTAAGGTTACTTCCGTAGTCAAGTACGGAGTCAAGCGCGATGGTGAACGATC
CGCAAACACTGACCATCGGGGCTTTCGCCAAGGCCGCTGGGGTCAACGTGGAGACCATCCGGTTCTATCAGCGCAAGGGGTTATTGCCAGAACCAGGTCG
GCCCGTCGGCAGTATTCGCCGCTACGGATCGGCGGACGTGGCGCGGGTGCGTTTCGTGAAATCCGCCCAGCGGCTGGGGTTCAACCTGGACGAAGTCGGC
CAACTCCTACAGCTTGAGGACGGCACTCACTGCAGCGAAGCCGCCGAGCTGGCTGCGCTCCAGCTCACCGACGTGCGCACCAAGATGGCGGACCTGACGC
GAATCGAAGCGGTGCTGTCACGGTTGGTCAACGAGTGCCATGCGCAGCGAGGCACTGTGTCGTGCCCGCTGATCGATTCTCTGCACGGGAGCTAGGCGCG
TGGCTTAACCCGGTTTTCCGTTCCACTGCGCCTCAAACCCCAGTTCGAGCCGGGGGCAAGGTGACCTGCCACTGATTGTTTCCTTGCACCGACATGCGCC
AGACAAAGCCCACACTGAAGGCTAAAAGCGCGTAAGACTTGCGATACCAGAAACCTACCGAACGAGAGCTGTCAGACAAGAAGGGCTAGTGCGGTCTTCC
CACACTAAAATCCGGATACCC
Protein section
ORF number : 5
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 144 | 1484 | + | No |
Chemistry : Unknow
ORF sequence :
MTDFLQLRSLKTLEILTSEDSYVVKAEGVNQWVTCPLCKTGCLHGHGSQEQSFQDTPTHGKPVVIFIQRRRYRCTSCTKTLFEPVADLDGKRQATARLVR
YIRDQSFSKTFAALAREVAVEEKTVRHVFDDFIEEVEAKTQFRTPRVLGIDELKIIGQYRAMITNVERKTVFDIRPSRAKAELMPYFRDLRDKDSVEWVA
MDMYHVYRQVVRATLPQARIVVDRFHIQRMANDALEKLRKRIRKDLSTRQRLKLKDERFLLLKRQHDLTGRDMDRMREWFQQFPLLSEAHALKEGFLSIW
DQKTRPAAEAACAKWQANIPTELAATFKDLTTAVHNWHDEIFAYFEQPITNAYTESVNRVAKDMNRMGRGYSFEVLRARMLYDKKARKDGSVIETVLVDD
DDPMTTDFVFQRMTTAATRKKKITRVVEYGPYLPTLARLLEEGYFE
YIRDQSFSKTFAALAREVAVEEKTVRHVFDDFIEEVEAKTQFRTPRVLGIDELKIIGQYRAMITNVERKTVFDIRPSRAKAELMPYFRDLRDKDSVEWVA
MDMYHVYRQVVRATLPQARIVVDRFHIQRMANDALEKLRKRIRKDLSTRQRLKLKDERFLLLKRQHDLTGRDMDRMREWFQQFPLLSEAHALKEGFLSIW
DQKTRPAAEAACAKWQANIPTELAATFKDLTTAVHNWHDEIFAYFEQPITNAYTESVNRVAKDMNRMGRGYSFEVLRARMLYDKKARKDGSVIETVLVDD
DDPMTTDFVFQRMTTAATRKKKITRVVEYGPYLPTLARLLEEGYFE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1695 bp | 564 aa | 3261 | 1567 | - | No |
Annotation : MerADescription :
ORF sequence :
MTEAITLHIDGMTCGSCAEHVKQTLEKVPGVRSASVSYPQRRAEIEASVGTAADVTSLVAAVSALGYRAQLADAPGQPSDLLNNAQERLGGEPKREDDEA
ALHVAVIGSGGAAMAAALKAVEQGARVTLIERSTLGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDDGIAAASPKILRKRLLAQQQGRVDELRHAKYEGI
LTSTPTITVLRGDARFKDAHTLTVATADDGMREVSFDRCLIATGASPAIPPIPGLKDTPFWTSTEALASDTIPDRLAVIGSSVVAVELAQAFARLGSKVT
MLARSTLFFREDPAIGEAITAVFRAEGIEVLDHTQASQVAYEDGEFVLTTERGELHADRLLFATGRTPNTRTLNLDAAGVVVNAQGAITIDHAMRTTVPH
IYAAGDCTDQPQFVYVAAAAGTRAAINMTGGNATLDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALVNFDTRGFIKLVSEAGSGR
LIGVQAVAPEAGELIQTAVLAIRNRMTVRELADQLFPYLTMVEGLKLAAQTFTKDVKQLSCCAG
ALHVAVIGSGGAAMAAALKAVEQGARVTLIERSTLGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDDGIAAASPKILRKRLLAQQQGRVDELRHAKYEGI
LTSTPTITVLRGDARFKDAHTLTVATADDGMREVSFDRCLIATGASPAIPPIPGLKDTPFWTSTEALASDTIPDRLAVIGSSVVAVELAQAFARLGSKVT
MLARSTLFFREDPAIGEAITAVFRAEGIEVLDHTQASQVAYEDGEFVLTTERGELHADRLLFATGRTPNTRTLNLDAAGVVVNAQGAITIDHAMRTTVPH
IYAAGDCTDQPQFVYVAAAAGTRAAINMTGGNATLDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALVNFDTRGFIKLVSEAGSGR
LIGVQAVAPEAGELIQTAVLAIRNRMTVRELADQLFPYLTMVEGLKLAAQTFTKDVKQLSCCAG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
279 bp | 92 aa | 3550 | 3272 | - | No |
Annotation : MerPDescription :
ORF sequence :
MKKLVALLALTVALSAPAWAATKTVTLSVPSMTCATCPITVKKALTKVEGVIEAKVTWEPKEAVVTYDDAKTTPAALTKATENAGYPSTVKK
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
348 bp | 116 aa | 3913 | 3566 | - | No |
Annotation : MerTDescription :
ORF sequence :
MADPSNGRGALAAGGLAAILASTCCLGPLVLITLGFSGAWIGNLTALEPYRPIFIGVALVALFFAWRRIFRPARACAPDDACAVPQVRTAYKVIFWIFTA
LVLIALVFPYLMPLFY
LVLIALVFPYLMPLFY
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 135 aa | 3988 | 4395 | + | No |
Annotation : MerRDescription :
ORF sequence :
MVNDPQTLTIGAFAKAAGVNVETIRFYQRKGLLPEPGRPVGSIRRYGSADVARVRFVKSAQRLGFNLDEVGQLLQLEDGTHCSEAAELAALQLTDVRTKM
ADLTRIEAVLSRLVNECHAQRGTVSCPLIDSLHGS
ADLTRIEAVLSRLVNECHAQRGTVSCPLIDSLHGS
Blast result :
Comments
ISStma11 is 60% aa similar to ISPst9. This IS had a mercuric operon as passengers genes. ORFB is MerA, ORFC is MerP, ORFD is MerT and ORFE is MerR.
References
1] ISfinder annotation (2009)
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74
2] Crossman,L.C., Gould,V.C., Dow,J.M., Vernikos,G.S., Okazaki,A., Sebaihia,M., Saunders,D., Arrowsmith,C., Carver,T., Peters,N., Adlem,E., Kerhornou,A., Lord,A., Murphy,L., Seeger,K., Squares,R., Rutter,S., Quail,M.A., Rajandream,M.A., Harris,D., Churcher,C., Bentley,S.D., Parkhill,J., Thomson,N.R. and Avison,M.B. (2008) Genome Biol. 9 (4), R74