ISSri1

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ANSJ01000002 ND Streptomyces rimosus
Streptomyces rimosus subsp. rimosus ATCC 10970
DNA section
IS Length : 2269 bp

Ends


IR Length : 23/26

IRL : GGGTGTGGATCCTTTTGAGGGACGGTTGAGCTGGGAAGACGCTGATTGAC
IRR : GGGTGTGGATCCTCTGGAGTGACGGTCGGGATCAAGCAGTGAGGCTGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCGGTGCGTTCTCGGTGTTCGTGCTGG9

DNA sequence

GGGTGTGGATCCTTTTGAGGGACGGTTGAGCTGGGAAGACGCTGATTGACGTGTGGGCGGCGGCGCCGTACTTCTACCGTGGCGGGGTGGAGGTGGGGCG
CCATGGTGTCGTTGCCGGAGGAGCTTCGGGTGCGGGAGGCCGCCGCTCGGCAGCGAGTGGAAGAGCTTGAGGCCGAAGCGGCGGAGTTGGCCGACCGGTT
GGAGCGGGCCCGGAAGGATCTGTCGCGGCTGGAGATTACGAGGGAGACGGTTGCGCAGGTGCTGGCGGAACTGTCGGCTGCGGAGGCTGAGCCGGAGACT
TCGGAAGAGGATGGGCCGAAGGAGCGCGAGGTGCCGGCGCCTCACGGACTCGGGGTGATGACGGTGCCGCCATGGCGGGAGGGGCTGGTCGTGGCGGTGC
TGCCGGATGTGTACCGGGACATCGTGGAGGTCATCGCAGATGCGCCGGGCCCATTGCAGGCCAAGCAGATCGTGCCGCGGATCGGCCTGGACGCGACGAG
CGCGAAGATCGAGGGGACGAGAGGGAAACTGAAGCGGCTGGTGGAGCGTGGCTGGCTGGACGAGGACGCGCCGGGACGGTTCGCTCTGGCCCGCCGAGGG
CCGGGCGCTGACCGGGCCAACTCCCGGTGACCAAGGGGCTCTTCTTCGTAGATTCGAAGGTGCCAACCGAAACGAATCACGCCCGAAGAAGAGCCCTCGA
TGGAACCGTACGACGCCTTGCCTCAACCTGATCCGTACTCCGCCTCCCGCAGTGCCTTCGAACGCCTCATCTCGACGCTGGCCGCCGGCCCGGCGACGGA
CCTGGCCCACGACGAACTGGAAGCGCATGTCGAGCAGTCGGGTCGCGAGCTGCTGCGACAGCTGCTGCAGGACCACCTCGACCTGCGCGCCAGGAGGGAG
GAAGAATCGATGCGCGCGAACGCAGAGCATCTGGTGGTCACCGGCCCGGAAGGACAGCAGCGAACCTGGCGGGAGACGGGTCATCGCCGCTGGCTGACCT
GCATGTTCGGGCCGGTCCGGGTGAGCCGGATCGCCTACCGCGGCCGAGGTGTTGCCAACGTGCACCCGGCGGACGAGGCGTTGTCGCTCCCCGCCGGCCG
GCACTCGCGCGGCCTGGCCCGGCTCGCGGTCCTGGAAGCGGTGCGCGGCTCGTTCGACCAGGCCGCCGCCGCGATCGAGCGACGATGTGGGAAGGTGCTG
GGCAAGCGCCGTCTCAAGGAACTGGTCCTCACCGCATCCGTCGATGTCGCCTCCTACTACGCGGCGAAGATTCCCACCCCGTGCACCCGCGAGATGCCAC
TGGTCATCCAGGTCGACGGCAAGGGCGTGGTGATGCGTCCCGAAGCTCTGCGCGAAGCCACCCGCCGGGCCGCGGCCAAGACCGCGGCGGCCGGGCGGCG
CGGACGCCTGGCTCCCGGGGAGAAACCCAACCGCAAGAGGATGGCGACGGTGGCCTGCGTCTTCGACACCGCCCCCGCCCCACGTCGGCCGCACGACATC
GTGCACCCGCCCGGCGGCCGCAGCAAGGCCCGGCCGCCCAGGCCGGGCCCGAAAGCGGAGCGGAAATGGTGCACCGCCTCGGTGATCCGTCCGCCCCAGC
AGGTGGTCGCCGACGCCTTCGCCCAGGCCGAAGCCCGCGACCCCCAGCACCTGCGCGACTGGATCGTGCTCGTCGACGGCGCCCGCCACCAGCTCGACCT
GATCCATGCCGAAGCCGCCCGGCGCGGCATCCGCCCGAACGTCCTGCTCGACTTCGTGCACGTTGCCGAGTACTGCTGGACGGCCGCGCACGCCTTCCAC
CCGGCGGGCAGCCGGGAGGCCGAGACCTGGGCCGCGGACAAACTCACCGCAATCCTCGCCGGACACGCCGACCGCGCGGCTACCGAGATGGCCGCCCAGG
CAGCAGCCGAACAACTTCCTGCCGCCCGCCGCGAGGCTGTCACCACCTGCCACCGCTACCTCACCGGCCACCTCGACCAACTCCACTACGACGCTGCCCT
CAAGAGCGGCTGGCCGATTGCCACCGGCGCTGTCGAAGGCGCCTGCCGGCACCTGATCGCCGACCGCCTCGATATCACCGGCGCCCGCTGGGGCCTCGAA
GGGGCCGAAGCCATCCTCCGACTCCGAGCATTGATCACGAACGGGGACTTCGAGGACTACTGGATCTTCCACGCGGCGCGCGAACATCAACGCCTCTACC
CCAGCCCTGACCACCAGGACTACAGCCTCACTGCTTGATCCCGACCGTCACTCCAGAGGATCCACACCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
528 bp175 aa103630+No
ORF function : Passenger Gene
Annotation : Transcriptional regulatorDescription : Transcriptional Regulator factor

ORF sequence :

MVSLPEELRVREAAARQRVEELEAEAAELADRLERARKDLSRLEITRETVAQVLAELSAAEAEPETSEEDGPKEREVPAPHGLGVMTVPPWREGLVVAVL
PDVYRDIVEVIADAPGPLQAKQIVPRIGLDATSAKIEGTRGKLKRLVERGWLDEDAPGRFALARRGPGADRANSR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1539 bp512 aa7002238+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEPYDALPQPDPYSASRSAFERLISTLAAGPATDLAHDELEAHVEQSGRELLRQLLQDHLDLRARREEESMRANAEHLVVTGPEGQQRTWRETGHRRWLT
CMFGPVRVSRIAYRGRGVANVHPADEALSLPAGRHSRGLARLAVLEAVRGSFDQAAAAIERRCGKVLGKRRLKELVLTASVDVASYYAAKIPTPCTREMP
LVIQVDGKGVVMRPEALREATRRAAAKTAAAGRRGRLAPGEKPNRKRMATVACVFDTAPAPRRPHDIVHPPGGRSKARPPRPGPKAERKWCTASVIRPPQ
QVVADAFAQAEARDPQHLRDWIVLVDGARHQLDLIHAEAARRGIRPNVLLDFVHVAEYCWTAAHAFHPAGSREAETWAADKLTAILAGHADRAATEMAAQ
AAAEQLPAARREAVTTCHRYLTGHLDQLHYDAALKSGWPIATGAVEGACRHLIADRLDITGARWGLEGAEAILRLRALITNGDFEDYWIFHAAREHQRLY
PSPDHQDYSLTA

 

Blast result :
Comments
ISSri1 is 59% aa (ORFB : the transposase) similar to ISFsp17.
The first ORF is a passenger gene annotated as transcriptional regulator.
References
1] ISfinder annotation (2013)
2] Pethick,F.E., MacFadyen,A.C., Tang,Z., Sangal,V., Tze-Tze,L., Chu,J.M., Guo,M.J., Kirby,R., Hoskisson,P.A., Herron,P.R. and Hunter,I.S. (2012) Direct submission GenBank.