ISSri1
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ANSJ01000002 | ND | Streptomyces rimosus | Streptomyces rimosus subsp. rimosus ATCC 10970 |
DNA section
IS Length : 2269 bp
Ends
IR Length : 23/26
IRL : GGGTGTGGATCCTTTTGAGGGACGGTTGAGCTGGGAAGACGCTGATTGAC
IRR : GGGTGTGGATCCTCTGGAGTGACGGTCGGGATCAAGCAGTGAGGCTGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCGGTGCG | TTCTCGGTG | TTCGTGCTGG | 9 |
DNA sequence
GGGTGTGGATCCTTTTGAGGGACGGTTGAGCTGGGAAGACGCTGATTGACGTGTGGGCGGCGGCGCCGTACTTCTACCGTGGCGGGGTGGAGGTGGGGCG
CCATGGTGTCGTTGCCGGAGGAGCTTCGGGTGCGGGAGGCCGCCGCTCGGCAGCGAGTGGAAGAGCTTGAGGCCGAAGCGGCGGAGTTGGCCGACCGGTT
GGAGCGGGCCCGGAAGGATCTGTCGCGGCTGGAGATTACGAGGGAGACGGTTGCGCAGGTGCTGGCGGAACTGTCGGCTGCGGAGGCTGAGCCGGAGACT
TCGGAAGAGGATGGGCCGAAGGAGCGCGAGGTGCCGGCGCCTCACGGACTCGGGGTGATGACGGTGCCGCCATGGCGGGAGGGGCTGGTCGTGGCGGTGC
TGCCGGATGTGTACCGGGACATCGTGGAGGTCATCGCAGATGCGCCGGGCCCATTGCAGGCCAAGCAGATCGTGCCGCGGATCGGCCTGGACGCGACGAG
CGCGAAGATCGAGGGGACGAGAGGGAAACTGAAGCGGCTGGTGGAGCGTGGCTGGCTGGACGAGGACGCGCCGGGACGGTTCGCTCTGGCCCGCCGAGGG
CCGGGCGCTGACCGGGCCAACTCCCGGTGACCAAGGGGCTCTTCTTCGTAGATTCGAAGGTGCCAACCGAAACGAATCACGCCCGAAGAAGAGCCCTCGA
TGGAACCGTACGACGCCTTGCCTCAACCTGATCCGTACTCCGCCTCCCGCAGTGCCTTCGAACGCCTCATCTCGACGCTGGCCGCCGGCCCGGCGACGGA
CCTGGCCCACGACGAACTGGAAGCGCATGTCGAGCAGTCGGGTCGCGAGCTGCTGCGACAGCTGCTGCAGGACCACCTCGACCTGCGCGCCAGGAGGGAG
GAAGAATCGATGCGCGCGAACGCAGAGCATCTGGTGGTCACCGGCCCGGAAGGACAGCAGCGAACCTGGCGGGAGACGGGTCATCGCCGCTGGCTGACCT
GCATGTTCGGGCCGGTCCGGGTGAGCCGGATCGCCTACCGCGGCCGAGGTGTTGCCAACGTGCACCCGGCGGACGAGGCGTTGTCGCTCCCCGCCGGCCG
GCACTCGCGCGGCCTGGCCCGGCTCGCGGTCCTGGAAGCGGTGCGCGGCTCGTTCGACCAGGCCGCCGCCGCGATCGAGCGACGATGTGGGAAGGTGCTG
GGCAAGCGCCGTCTCAAGGAACTGGTCCTCACCGCATCCGTCGATGTCGCCTCCTACTACGCGGCGAAGATTCCCACCCCGTGCACCCGCGAGATGCCAC
TGGTCATCCAGGTCGACGGCAAGGGCGTGGTGATGCGTCCCGAAGCTCTGCGCGAAGCCACCCGCCGGGCCGCGGCCAAGACCGCGGCGGCCGGGCGGCG
CGGACGCCTGGCTCCCGGGGAGAAACCCAACCGCAAGAGGATGGCGACGGTGGCCTGCGTCTTCGACACCGCCCCCGCCCCACGTCGGCCGCACGACATC
GTGCACCCGCCCGGCGGCCGCAGCAAGGCCCGGCCGCCCAGGCCGGGCCCGAAAGCGGAGCGGAAATGGTGCACCGCCTCGGTGATCCGTCCGCCCCAGC
AGGTGGTCGCCGACGCCTTCGCCCAGGCCGAAGCCCGCGACCCCCAGCACCTGCGCGACTGGATCGTGCTCGTCGACGGCGCCCGCCACCAGCTCGACCT
GATCCATGCCGAAGCCGCCCGGCGCGGCATCCGCCCGAACGTCCTGCTCGACTTCGTGCACGTTGCCGAGTACTGCTGGACGGCCGCGCACGCCTTCCAC
CCGGCGGGCAGCCGGGAGGCCGAGACCTGGGCCGCGGACAAACTCACCGCAATCCTCGCCGGACACGCCGACCGCGCGGCTACCGAGATGGCCGCCCAGG
CAGCAGCCGAACAACTTCCTGCCGCCCGCCGCGAGGCTGTCACCACCTGCCACCGCTACCTCACCGGCCACCTCGACCAACTCCACTACGACGCTGCCCT
CAAGAGCGGCTGGCCGATTGCCACCGGCGCTGTCGAAGGCGCCTGCCGGCACCTGATCGCCGACCGCCTCGATATCACCGGCGCCCGCTGGGGCCTCGAA
GGGGCCGAAGCCATCCTCCGACTCCGAGCATTGATCACGAACGGGGACTTCGAGGACTACTGGATCTTCCACGCGGCGCGCGAACATCAACGCCTCTACC
CCAGCCCTGACCACCAGGACTACAGCCTCACTGCTTGATCCCGACCGTCACTCCAGAGGATCCACACCC
CCATGGTGTCGTTGCCGGAGGAGCTTCGGGTGCGGGAGGCCGCCGCTCGGCAGCGAGTGGAAGAGCTTGAGGCCGAAGCGGCGGAGTTGGCCGACCGGTT
GGAGCGGGCCCGGAAGGATCTGTCGCGGCTGGAGATTACGAGGGAGACGGTTGCGCAGGTGCTGGCGGAACTGTCGGCTGCGGAGGCTGAGCCGGAGACT
TCGGAAGAGGATGGGCCGAAGGAGCGCGAGGTGCCGGCGCCTCACGGACTCGGGGTGATGACGGTGCCGCCATGGCGGGAGGGGCTGGTCGTGGCGGTGC
TGCCGGATGTGTACCGGGACATCGTGGAGGTCATCGCAGATGCGCCGGGCCCATTGCAGGCCAAGCAGATCGTGCCGCGGATCGGCCTGGACGCGACGAG
CGCGAAGATCGAGGGGACGAGAGGGAAACTGAAGCGGCTGGTGGAGCGTGGCTGGCTGGACGAGGACGCGCCGGGACGGTTCGCTCTGGCCCGCCGAGGG
CCGGGCGCTGACCGGGCCAACTCCCGGTGACCAAGGGGCTCTTCTTCGTAGATTCGAAGGTGCCAACCGAAACGAATCACGCCCGAAGAAGAGCCCTCGA
TGGAACCGTACGACGCCTTGCCTCAACCTGATCCGTACTCCGCCTCCCGCAGTGCCTTCGAACGCCTCATCTCGACGCTGGCCGCCGGCCCGGCGACGGA
CCTGGCCCACGACGAACTGGAAGCGCATGTCGAGCAGTCGGGTCGCGAGCTGCTGCGACAGCTGCTGCAGGACCACCTCGACCTGCGCGCCAGGAGGGAG
GAAGAATCGATGCGCGCGAACGCAGAGCATCTGGTGGTCACCGGCCCGGAAGGACAGCAGCGAACCTGGCGGGAGACGGGTCATCGCCGCTGGCTGACCT
GCATGTTCGGGCCGGTCCGGGTGAGCCGGATCGCCTACCGCGGCCGAGGTGTTGCCAACGTGCACCCGGCGGACGAGGCGTTGTCGCTCCCCGCCGGCCG
GCACTCGCGCGGCCTGGCCCGGCTCGCGGTCCTGGAAGCGGTGCGCGGCTCGTTCGACCAGGCCGCCGCCGCGATCGAGCGACGATGTGGGAAGGTGCTG
GGCAAGCGCCGTCTCAAGGAACTGGTCCTCACCGCATCCGTCGATGTCGCCTCCTACTACGCGGCGAAGATTCCCACCCCGTGCACCCGCGAGATGCCAC
TGGTCATCCAGGTCGACGGCAAGGGCGTGGTGATGCGTCCCGAAGCTCTGCGCGAAGCCACCCGCCGGGCCGCGGCCAAGACCGCGGCGGCCGGGCGGCG
CGGACGCCTGGCTCCCGGGGAGAAACCCAACCGCAAGAGGATGGCGACGGTGGCCTGCGTCTTCGACACCGCCCCCGCCCCACGTCGGCCGCACGACATC
GTGCACCCGCCCGGCGGCCGCAGCAAGGCCCGGCCGCCCAGGCCGGGCCCGAAAGCGGAGCGGAAATGGTGCACCGCCTCGGTGATCCGTCCGCCCCAGC
AGGTGGTCGCCGACGCCTTCGCCCAGGCCGAAGCCCGCGACCCCCAGCACCTGCGCGACTGGATCGTGCTCGTCGACGGCGCCCGCCACCAGCTCGACCT
GATCCATGCCGAAGCCGCCCGGCGCGGCATCCGCCCGAACGTCCTGCTCGACTTCGTGCACGTTGCCGAGTACTGCTGGACGGCCGCGCACGCCTTCCAC
CCGGCGGGCAGCCGGGAGGCCGAGACCTGGGCCGCGGACAAACTCACCGCAATCCTCGCCGGACACGCCGACCGCGCGGCTACCGAGATGGCCGCCCAGG
CAGCAGCCGAACAACTTCCTGCCGCCCGCCGCGAGGCTGTCACCACCTGCCACCGCTACCTCACCGGCCACCTCGACCAACTCCACTACGACGCTGCCCT
CAAGAGCGGCTGGCCGATTGCCACCGGCGCTGTCGAAGGCGCCTGCCGGCACCTGATCGCCGACCGCCTCGATATCACCGGCGCCCGCTGGGGCCTCGAA
GGGGCCGAAGCCATCCTCCGACTCCGAGCATTGATCACGAACGGGGACTTCGAGGACTACTGGATCTTCCACGCGGCGCGCGAACATCAACGCCTCTACC
CCAGCCCTGACCACCAGGACTACAGCCTCACTGCTTGATCCCGACCGTCACTCCAGAGGATCCACACCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
528 bp | 175 aa | 103 | 630 | + | No |
Annotation : Transcriptional regulatorDescription : Transcriptional Regulator factor
ORF sequence :
MVSLPEELRVREAAARQRVEELEAEAAELADRLERARKDLSRLEITRETVAQVLAELSAAEAEPETSEEDGPKEREVPAPHGLGVMTVPPWREGLVVAVL
PDVYRDIVEVIADAPGPLQAKQIVPRIGLDATSAKIEGTRGKLKRLVERGWLDEDAPGRFALARRGPGADRANSR
PDVYRDIVEVIADAPGPLQAKQIVPRIGLDATSAKIEGTRGKLKRLVERGWLDEDAPGRFALARRGPGADRANSR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1539 bp | 512 aa | 700 | 2238 | + | No |
Chemistry : DDE
ORF sequence :
MEPYDALPQPDPYSASRSAFERLISTLAAGPATDLAHDELEAHVEQSGRELLRQLLQDHLDLRARREEESMRANAEHLVVTGPEGQQRTWRETGHRRWLT
CMFGPVRVSRIAYRGRGVANVHPADEALSLPAGRHSRGLARLAVLEAVRGSFDQAAAAIERRCGKVLGKRRLKELVLTASVDVASYYAAKIPTPCTREMP
LVIQVDGKGVVMRPEALREATRRAAAKTAAAGRRGRLAPGEKPNRKRMATVACVFDTAPAPRRPHDIVHPPGGRSKARPPRPGPKAERKWCTASVIRPPQ
QVVADAFAQAEARDPQHLRDWIVLVDGARHQLDLIHAEAARRGIRPNVLLDFVHVAEYCWTAAHAFHPAGSREAETWAADKLTAILAGHADRAATEMAAQ
AAAEQLPAARREAVTTCHRYLTGHLDQLHYDAALKSGWPIATGAVEGACRHLIADRLDITGARWGLEGAEAILRLRALITNGDFEDYWIFHAAREHQRLY
PSPDHQDYSLTA
CMFGPVRVSRIAYRGRGVANVHPADEALSLPAGRHSRGLARLAVLEAVRGSFDQAAAAIERRCGKVLGKRRLKELVLTASVDVASYYAAKIPTPCTREMP
LVIQVDGKGVVMRPEALREATRRAAAKTAAAGRRGRLAPGEKPNRKRMATVACVFDTAPAPRRPHDIVHPPGGRSKARPPRPGPKAERKWCTASVIRPPQ
QVVADAFAQAEARDPQHLRDWIVLVDGARHQLDLIHAEAARRGIRPNVLLDFVHVAEYCWTAAHAFHPAGSREAETWAADKLTAILAGHADRAATEMAAQ
AAAEQLPAARREAVTTCHRYLTGHLDQLHYDAALKSGWPIATGAVEGACRHLIADRLDITGARWGLEGAEAILRLRALITNGDFEDYWIFHAAREHQRLY
PSPDHQDYSLTA
Blast result :
Comments
ISSri1 is 59% aa (ORFB : the transposase) similar to ISFsp17.
The first ORF is a passenger gene annotated as transcriptional regulator.
The first ORF is a passenger gene annotated as transcriptional regulator.
References
1] ISfinder annotation (2013)
2] Pethick,F.E., MacFadyen,A.C., Tang,Z., Sangal,V., Tze-Tze,L., Chu,J.M., Guo,M.J., Kirby,R., Hoskisson,P.A., Herron,P.R. and Hunter,I.S. (2012) Direct submission GenBank.
2] Pethick,F.E., MacFadyen,A.C., Tang,Z., Sangal,V., Tze-Tze,L., Chu,J.M., Guo,M.J., Kirby,R., Hoskisson,P.A., Herron,P.R. and Hunter,I.S. (2012) Direct submission GenBank.