ISSpo3
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003911 | ND | Silicibacter pomeroyi | Silicibacter pomeroyi DSS-3 |
DNA section
IS Length : 1947 bp
Ends
IR Length : 21/24
IRL : GGGGCTTATCCCCTTGACACAAGTAAACGCATTCGATAAATTGAGGGCAT
IRR : GGGGTGTGTCCCCTTGACACAAGTTTTCCGCTTGTTCTCGCAAACGTAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGAGTTCCGCGTCCCGGCACCCA | ATATGCTT | TGGGTCAGCGATTTCACCTATGTC | 8 |
DNA sequence
GGGGCTTATCCCCTTGACACAAGTAAACGCATTCGATAAATTGAGGGCATGGAAAAGAACAAATCATCATCTCCAGACTTTAGCGTCCGCGATTTTTTCA
AGCGGTTCCCCGATGATGAAGCTTGCCTTGAGCATATCTTCAACGTCCGTTTCGGAGCGCGTCACGTCTGCCGGGCCTGCGGCGTCGAAAGCACGTTCCA
CCGCATGAGCGACCGCCGTGCGTTTGCCTGCGCTGCCTGCGGTGATCATGTCTACCCCACGGCTGGCACGATCTTTCAGGACACACGCACGCCGCTCCAA
GTTTGGTTTTACGCGATCTACCTGTTTGTCACGACACGCCACGGCGTTTCCGGCAAAGAACTGCAACGCCAGCTTGGGGTGACCTATAAGACCGCATGGC
GGATCGGACACAAAATCCGCGAGCAAATGGACAAGCATGACCTTAAGGCGATGCTGCAGGGTCATGTCGAGATTGACGAAGCATACATTGGCGGTAAGCG
CCCCGGCAAGCGTGGTCGCGGTGCGGCTGGCAAAACAATTGTCATGGGCTTCAAGCAGCGTGGCGGGCGTCTGGTGACTGAGATTGTCCCTGACGTGAAG
CTGAAAACCCTTCGAGCTGAAACACTTAAGACCGTTGATGCCGGTGCGACTGTTTCGACAGATGAACTTTATAGCTACAGCTTACTGAAAGGCGAGGGCT
ACACCCACGTTGCGGTCAAGCATGGGGCCAAGCAATGGACGATCTACGACGCCGAAACCGACACCATGCACCACACCAACCACGTTGAAAGCTTTTGGCG
TCACTTCAAGCACTCGATCCGTGGCACTCACGTTTCAATCAGCCAAAGGCACATGCGCAAGTATCTGGACGAATTCACTTTTCGCGCGAACCATCGCGGC
GAGGTGAACCTGATGTTTGATCGATTGGTTGCGGCGTTCTGATAACGGCAGAGGCGGTTAGATCAAATTCCGCCCCGCTGATCGGGCCAGCGCCTCGGGC
TTCCTCTTGCGCGATAAACTCTTGTAAACGCCCGGCTTCTATCGCTTCACGCAAAGATAACATGCTGGATTCGCTCCAAGATTCTTGACTTGCAATCGAT
TGTAGCATAGAAATTCCAATAGGCGAACGGGTGGCCATGGCCACCCGCTCTTGGTCCCCCAACGGGGCTGCACATCACGGACGCTAGCTAGTCATTCCGT
GATCTGGAGGTCGGTTAATGGTTCCATAGAACCACCCCCGATCAAGTTCCCGGCGTCTTCCAGTGCCGGGTCTGGCCTGAGGGGTCAGGATGTTTACCAG
GCGGGTCCCCGAACTCGTATCCGCCTGCAAATTTAGGAGAAGTGTCACCTTCCCCTGCTTCTGAGCCGCCCAAGGGCGGCTCATTCTCTTTCTGGTTTGC
GCCAATAAGCGCCAAACCAGAATCTGTAAATTCAAACTTCCCGTGTCCAACACGGTCAAACCACCCCGCTTTGACGGCATTCATCATCTGCGTGCGCTGA
CCGCCTGCGCTTGCCTCGTGCCCTGCCAGTTCAACCGCTGCGCCGATGTCCTCATAGCTGTAAGGCGCGTCTGCGGTAGCGTGGAGAGCCTTGTAGATAC
TGACCCATTTGTCCGATGCGCCTACTTTCGGCGTCACGTCCAGATCAAAGTCTACATCCTTCAGGGCATCAGCGATCCCCGCGCGCTCCATGGCTTTGAT
AGCCTTGTCGTAAGCTTCAACCTCGACGCTGAAACGTTCGGCTTCGCGCTGCGCTTTCTCCGCACGATCCAAAGCAGCAGTGCGCTTCTTTTCGGCTTCT
GCACGCAAGCGCAAGATGATGTGGGATTCGTTTGTCATAATTCGACTCTTAGTGGTGTCGGCGTAAAACGTCAAGTTGAACTCGTCACGCGAACAACATT
ACGTTTGCGAGAACAAGCGGAAAACTTGTGTCAAGGGGACACACCCC
AGCGGTTCCCCGATGATGAAGCTTGCCTTGAGCATATCTTCAACGTCCGTTTCGGAGCGCGTCACGTCTGCCGGGCCTGCGGCGTCGAAAGCACGTTCCA
CCGCATGAGCGACCGCCGTGCGTTTGCCTGCGCTGCCTGCGGTGATCATGTCTACCCCACGGCTGGCACGATCTTTCAGGACACACGCACGCCGCTCCAA
GTTTGGTTTTACGCGATCTACCTGTTTGTCACGACACGCCACGGCGTTTCCGGCAAAGAACTGCAACGCCAGCTTGGGGTGACCTATAAGACCGCATGGC
GGATCGGACACAAAATCCGCGAGCAAATGGACAAGCATGACCTTAAGGCGATGCTGCAGGGTCATGTCGAGATTGACGAAGCATACATTGGCGGTAAGCG
CCCCGGCAAGCGTGGTCGCGGTGCGGCTGGCAAAACAATTGTCATGGGCTTCAAGCAGCGTGGCGGGCGTCTGGTGACTGAGATTGTCCCTGACGTGAAG
CTGAAAACCCTTCGAGCTGAAACACTTAAGACCGTTGATGCCGGTGCGACTGTTTCGACAGATGAACTTTATAGCTACAGCTTACTGAAAGGCGAGGGCT
ACACCCACGTTGCGGTCAAGCATGGGGCCAAGCAATGGACGATCTACGACGCCGAAACCGACACCATGCACCACACCAACCACGTTGAAAGCTTTTGGCG
TCACTTCAAGCACTCGATCCGTGGCACTCACGTTTCAATCAGCCAAAGGCACATGCGCAAGTATCTGGACGAATTCACTTTTCGCGCGAACCATCGCGGC
GAGGTGAACCTGATGTTTGATCGATTGGTTGCGGCGTTCTGATAACGGCAGAGGCGGTTAGATCAAATTCCGCCCCGCTGATCGGGCCAGCGCCTCGGGC
TTCCTCTTGCGCGATAAACTCTTGTAAACGCCCGGCTTCTATCGCTTCACGCAAAGATAACATGCTGGATTCGCTCCAAGATTCTTGACTTGCAATCGAT
TGTAGCATAGAAATTCCAATAGGCGAACGGGTGGCCATGGCCACCCGCTCTTGGTCCCCCAACGGGGCTGCACATCACGGACGCTAGCTAGTCATTCCGT
GATCTGGAGGTCGGTTAATGGTTCCATAGAACCACCCCCGATCAAGTTCCCGGCGTCTTCCAGTGCCGGGTCTGGCCTGAGGGGTCAGGATGTTTACCAG
GCGGGTCCCCGAACTCGTATCCGCCTGCAAATTTAGGAGAAGTGTCACCTTCCCCTGCTTCTGAGCCGCCCAAGGGCGGCTCATTCTCTTTCTGGTTTGC
GCCAATAAGCGCCAAACCAGAATCTGTAAATTCAAACTTCCCGTGTCCAACACGGTCAAACCACCCCGCTTTGACGGCATTCATCATCTGCGTGCGCTGA
CCGCCTGCGCTTGCCTCGTGCCCTGCCAGTTCAACCGCTGCGCCGATGTCCTCATAGCTGTAAGGCGCGTCTGCGGTAGCGTGGAGAGCCTTGTAGATAC
TGACCCATTTGTCCGATGCGCCTACTTTCGGCGTCACGTCCAGATCAAAGTCTACATCCTTCAGGGCATCAGCGATCCCCGCGCGCTCCATGGCTTTGAT
AGCCTTGTCGTAAGCTTCAACCTCGACGCTGAAACGTTCGGCTTCGCGCTGCGCTTTCTCCGCACGATCCAAAGCAGCAGTGCGCTTCTTTTCGGCTTCT
GCACGCAAGCGCAAGATGATGTGGGATTCGTTTGTCATAATTCGACTCTTAGTGGTGTCGGCGTAAAACGTCAAGTTGAACTCGTCACGCGAACAACATT
ACGTTTGCGAGAACAAGCGGAAAACTTGTGTCAAGGGGACACACCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 49 | 942 | + | No |
Chemistry : DDE
ORF sequence :
MEKNKSSSPDFSVRDFFKRFPDDEACLEHIFNVRFGARHVCRACGVESTFHRMSDRRAFACAACGDHVYPTAGTIFQDTRTPLQVWFYAIYLFVTTRHGV
SGKELQRQLGVTYKTAWRIGHKIREQMDKHDLKAMLQGHVEIDEAYIGGKRPGKRGRGAAGKTIVMGFKQRGGRLVTEIVPDVKLKTLRAETLKTVDAGA
TVSTDELYSYSLLKGEGYTHVAVKHGAKQWTIYDAETDTMHHTNHVESFWRHFKHSIRGTHVSISQRHMRKYLDEFTFRANHRGEVNLMFDRLVAAF
SGKELQRQLGVTYKTAWRIGHKIREQMDKHDLKAMLQGHVEIDEAYIGGKRPGKRGRGAAGKTIVMGFKQRGGRLVTEIVPDVKLKTLRAETLKTVDAGA
TVSTDELYSYSLLKGEGYTHVAVKHGAKQWTIYDAETDTMHHTNHVESFWRHFKHSIRGTHVSISQRHMRKYLDEFTFRANHRGEVNLMFDRLVAAF
Blast result :
Comments
There is one copy of ISSpo3 in Silicibacter pomeroyi DSS-3.
ISSpo3 is 51% aa similar to ISHch1.
The genome sequence showed that the entire IS element is significantly longer than the transposase ORF.(ISFinder annotation)
ISSpo3 is 51% aa similar to ISHch1.
The genome sequence showed that the entire IS element is significantly longer than the transposase ORF.(ISFinder annotation)
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G.,Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913