ISSod11
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004347 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1040 bp
Ends
IR Length : 22/25
IRL : AAGGGCTATCCATTTAGCGCCACCAGTGTCAATATGTAGTAATGAAAACT
IRR : AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTGCTATTGG | TTGTTTAT | ACAGACCTTTGC | 8 |
DNA sequence
AAGGGCTATCCATTTAGCGCCACCAGTGTCAATATGTAGTAATGAAAACTTCATCGTATTTATTAAAAGCTGGCGTCGATTACCCTACAAATTGGGACGA
ATTTGTTGATTGGTTTCATGATGAACAATCTTGCACTAGCTACCTTTACGCACTTCGTTGGCCAAACGGATTCATTTGCCCAAGCTGTTCGAGCCATCAA
TCACCTTATCAGTTAAGTAATGGCAAGTTAAAATGTCATGCTTGCCGTTTTCAGTGTTCAGTAACATCAAGTACACTTTTTGACAAAACAAGAACCCCCA
TGAAAAGTTGGTTTGCAGCTGTCTGGTTTATTACAAATCAAAAGAATGGGGTCAGCGCTCTTGGAGTCCAAAGGCTATTAGGTCTTGGGAGTTATCAAAC
TGCTTGGTCTTTAATGCACAAGTTAAGATATGCCATGGTTGACCCTGAAAGAGATAAACTGTCCGGCATCGTAGAGGTTGACGAAACATTAATAGGTGGG
GTCATTCCAAAATCATCTATTAAAAATCAACAGGGTAAGCGTAAAGCTATAGTTTTGGTGGCTGTTGAGCTGCTATCACCCTCTGGATTTGGGCGGATAC
GTTTAAGGCAAGTAGAAAGTGCAACTAAAGAACATATCCATCAATTCATTCAAGATGTAATAGAGCCTGGTAGCACAATTTGTAGTGATGGTTCTCAAGC
ATACAAGCAAATAGACAAAAAAGGATATAAGCATAATCGGATGGTGCATTTAGGTTCATCTGTACCTGCACATGAAACAATGGCTGGGGTGCATCGAGTC
TCATCATTATGTAAAAGATGGCTTTTAGGTACGTATCAAGGTGCGGTAAAGGCTAAGCAACTTGATTATTATTTAGATGAATTTACATTTCGCTTCAACA
GAAGAAAGTCAGATTCTCGGGGATTATTATTCTACAGGTTGCTTGAGCAAGCAGTGCGTTCTAAGCCGATAACGTACCAATCAATTAAAAATCGATAACC
ACAATATATAGTGGTTGGTCGTGCTAAGTGGATAGCCCTT
ATTTGTTGATTGGTTTCATGATGAACAATCTTGCACTAGCTACCTTTACGCACTTCGTTGGCCAAACGGATTCATTTGCCCAAGCTGTTCGAGCCATCAA
TCACCTTATCAGTTAAGTAATGGCAAGTTAAAATGTCATGCTTGCCGTTTTCAGTGTTCAGTAACATCAAGTACACTTTTTGACAAAACAAGAACCCCCA
TGAAAAGTTGGTTTGCAGCTGTCTGGTTTATTACAAATCAAAAGAATGGGGTCAGCGCTCTTGGAGTCCAAAGGCTATTAGGTCTTGGGAGTTATCAAAC
TGCTTGGTCTTTAATGCACAAGTTAAGATATGCCATGGTTGACCCTGAAAGAGATAAACTGTCCGGCATCGTAGAGGTTGACGAAACATTAATAGGTGGG
GTCATTCCAAAATCATCTATTAAAAATCAACAGGGTAAGCGTAAAGCTATAGTTTTGGTGGCTGTTGAGCTGCTATCACCCTCTGGATTTGGGCGGATAC
GTTTAAGGCAAGTAGAAAGTGCAACTAAAGAACATATCCATCAATTCATTCAAGATGTAATAGAGCCTGGTAGCACAATTTGTAGTGATGGTTCTCAAGC
ATACAAGCAAATAGACAAAAAAGGATATAAGCATAATCGGATGGTGCATTTAGGTTCATCTGTACCTGCACATGAAACAATGGCTGGGGTGCATCGAGTC
TCATCATTATGTAAAAGATGGCTTTTAGGTACGTATCAAGGTGCGGTAAAGGCTAAGCAACTTGATTATTATTTAGATGAATTTACATTTCGCTTCAACA
GAAGAAAGTCAGATTCTCGGGGATTATTATTCTACAGGTTGCTTGAGCAAGCAGTGCGTTCTAAGCCGATAACGTACCAATCAATTAAAAATCGATAACC
ACAATATATAGTGGTTGGTCGTGCTAAGTGGATAGCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 42 | 998 | + | No |
Chemistry : DDE
ORF sequence :
MKTSSYLLKAGVDYPTNWDEFVDWFHDEQSCTSYLYALRWPNGFICPSCSSHQSPYQLSNGKLKCHACRFQCSVTSSTLFDKTRTPMKSWFAAVWFITNQ
KNGVSALGVQRLLGLGSYQTAWSLMHKLRYAMVDPERDKLSGIVEVDETLIGGVIPKSSIKNQQGKRKAIVLVAVELLSPSGFGRIRLRQVESATKEHIH
QFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHLGSSVPAHETMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLFYRL
LEQAVRSKPITYQSIKNR
KNGVSALGVQRLLGLGSYQTAWSLMHKLRYAMVDPERDKLSGIVEVDETLIGGVIPKSSIKNQQGKRKAIVLVAVELLSPSGFGRIRLRQVESATKEHIH
QFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHLGSSVPAHETMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLFYRL
LEQAVRSKPITYQSIKNR
Blast result :
Comments
There are 13 copies of ISSod11 in the chromosome and 0 copies in the plasmid of this strain.
ISSod11 is 74% aa similar to ISPosp3.
ISSod11 is 74% aa similar to ISPosp3.
References
1] Daraselia,N., Dernovoy,D., Tian,Y., Borodovsky,M., Tatusov,R. and Tatusova,T. (2003) OMICS 7 (2), 171-175
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S., DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J., Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S., DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J., Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123