ISSod11

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004347 ND Shewanella oneidensis
Shewanella oneidensis MR-1
DNA section
IS Length : 1040 bp

Ends


IR Length : 22/25

IRL : AAGGGCTATCCATTTAGCGCCACCAGTGTCAATATGTAGTAATGAAAACT
IRR : AAGGGCTATCCACTTAGCACGACCAACCACTATATATTGTGGTTATCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTGCTATTGGTTGTTTATACAGACCTTTGC8

DNA sequence

AAGGGCTATCCATTTAGCGCCACCAGTGTCAATATGTAGTAATGAAAACTTCATCGTATTTATTAAAAGCTGGCGTCGATTACCCTACAAATTGGGACGA
ATTTGTTGATTGGTTTCATGATGAACAATCTTGCACTAGCTACCTTTACGCACTTCGTTGGCCAAACGGATTCATTTGCCCAAGCTGTTCGAGCCATCAA
TCACCTTATCAGTTAAGTAATGGCAAGTTAAAATGTCATGCTTGCCGTTTTCAGTGTTCAGTAACATCAAGTACACTTTTTGACAAAACAAGAACCCCCA
TGAAAAGTTGGTTTGCAGCTGTCTGGTTTATTACAAATCAAAAGAATGGGGTCAGCGCTCTTGGAGTCCAAAGGCTATTAGGTCTTGGGAGTTATCAAAC
TGCTTGGTCTTTAATGCACAAGTTAAGATATGCCATGGTTGACCCTGAAAGAGATAAACTGTCCGGCATCGTAGAGGTTGACGAAACATTAATAGGTGGG
GTCATTCCAAAATCATCTATTAAAAATCAACAGGGTAAGCGTAAAGCTATAGTTTTGGTGGCTGTTGAGCTGCTATCACCCTCTGGATTTGGGCGGATAC
GTTTAAGGCAAGTAGAAAGTGCAACTAAAGAACATATCCATCAATTCATTCAAGATGTAATAGAGCCTGGTAGCACAATTTGTAGTGATGGTTCTCAAGC
ATACAAGCAAATAGACAAAAAAGGATATAAGCATAATCGGATGGTGCATTTAGGTTCATCTGTACCTGCACATGAAACAATGGCTGGGGTGCATCGAGTC
TCATCATTATGTAAAAGATGGCTTTTAGGTACGTATCAAGGTGCGGTAAAGGCTAAGCAACTTGATTATTATTTAGATGAATTTACATTTCGCTTCAACA
GAAGAAAGTCAGATTCTCGGGGATTATTATTCTACAGGTTGCTTGAGCAAGCAGTGCGTTCTAAGCCGATAACGTACCAATCAATTAAAAATCGATAACC
ACAATATATAGTGGTTGGTCGTGCTAAGTGGATAGCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa42998+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTSSYLLKAGVDYPTNWDEFVDWFHDEQSCTSYLYALRWPNGFICPSCSSHQSPYQLSNGKLKCHACRFQCSVTSSTLFDKTRTPMKSWFAAVWFITNQ
KNGVSALGVQRLLGLGSYQTAWSLMHKLRYAMVDPERDKLSGIVEVDETLIGGVIPKSSIKNQQGKRKAIVLVAVELLSPSGFGRIRLRQVESATKEHIH
QFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHLGSSVPAHETMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLFYRL
LEQAVRSKPITYQSIKNR

 

Blast result :
Comments
There are 13 copies of ISSod11 in the chromosome and 0 copies in the plasmid of this strain.
ISSod11 is 74% aa similar to ISPosp3.
References
1] Daraselia,N., Dernovoy,D., Tian,Y., Borodovsky,M., Tatusov,R. and Tatusova,T. (2003) OMICS 7 (2), 171-175
2] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S., DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J., Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C.
(2002) Nat. Biotechnol. 20 (11), 1118-1123