ISSde12

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007954 ND Shewanella denitrificans
Shewanella denitrificans OS217
DNA section
IS Length : 2295 bp

Ends


oriIS : GAAGCCGCTTTGCGGCAGGAAAGATAAAACACCGCCTTACCTCCCCATCCCAAATACTTACTAGACCCTGCCAATTTGGCATTTATCTAGGAGTATTGTC II struct. : No
terIS : ATGGGTTGTTGCATCTTATAAAAAGTGACATAAACCAAACCCACCGACAGCGGCGTAAGTTCTTACGTCGATATTTACTATATAAAGGTATCACTTCTAG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTTGTT GAACCAAG CTCGGG

DNA sequence

GAAGCCGCTTTGCGGCAGGAAAGATAAAACACCGCCTTACCTCCCCATCCCAAATACTTACTAGACCCTGCCAATTTGGCATTTATCTAGGAGTATTGTC
ATGAACCCATCCGAGCAACAACGCTTCGATTGTCTTTATCAACAACATCTTACCAACTTAACCCTGCAAGGCAAGCGCCCTGCTACCATCGATGCCTACA
GTCGGGCTGTTAGGCGTATAGCGGCCTACTTCGACTGCTGCCCCGACAAGCTCACAACTGCTGATTTAAAACGTTACTTCGCCGATTTAATTGCCTCTCA
TTCATGGAGTACCGTGAAACTTGACCGTAATGGTCTGCAATTCTTCTATCGCCATGTGCTCAACCAAGCTTGGCAGTGGCTCAGCATCGTCAAGCCGCCG
CAAGTCAACCATCTGCCCGATATCCTCACCCCCGCTGAAGTGTCTATGGTCATTAGCCTCACTCACAAGTTGCGTTATCAAGTGTGCTTTTTAACCCTTT
ACAGCATGGGATTACGTCTCGGTGAAGCGGTCTCGTTGCAGATTGGCGATATCGACTCACAGTTGATGCAGGTGCATATCCGTGATGCCAAAGGCGGTAA
GGATAGACTGATTCCTTTACCGCAACGCACCTTGCAGGCACTGCGTTATTACTGGCAAACCCATCGCCATCCTCGTTATTTATTTCCGGGTAAGGATGGT
AAGCCAAATTCACTGATGGACCGTGGTGGCATTCAGAAAGCGATGAAAAAAGTGATTAGTGAATGCCATATTCACAAATCCATCAGCCCACATAATTTAC
GTCACAGCTATGCCACTCATCTGCTCGAACAAGGGTTAGATTTACGCTCAGTGCAGCAGTTACTCGGCCACAACAGCCTCAACACCACCGCCCGTTACAC
CCGGCTCACCACCATCACTCGCAAGAACACTGTCGAATCGATTAACCAACTGACGAATAATCTGGTATTGATGTGGGAGTGTGAACAATGAAGTTCATCG
ATATTTTACGTGACCATCTTGATGAGTTTAATGCGCATTATCAAGGGTATATCACCACATCCATGCGCCAAGCCATTCATGCCATGCTCAGTTGCCGCAC
TCATTCCCAAAAAGTCAGCCACTGGGCTTGTCAGGGATGCGCTCATACTGCTGACTTTCCGCTGTCATGCGGCCATCGCAGTTGTCCGCAATGTCAGTAC
AACACCACGAGTGACTGGCTCGCTAAACAGCAGGCTAAGCTACTCCCCGTCAATTACTACATGGTGACTTTTACCTTACCATTTGAGCTTCGAGTCGTGG
CAAAACATCAACCTGAGGTGATGTATCAAGCGATGTTCTCCGTTGCTGCCAGTGTGCTAAAAGAGTTTGCTAAAAACTCGAAGCTACTCGGCGGTGAAAT
TGGTTTTACGGGCGTGCTGCATACTCACAATCGGCGGCGCGACCTGCATCCGCATATTCATTTCATCATCCCTGCAGGTAGCTTCGATAAAGACAGAAAA
CAGTGGCACAAGAGTAAAGGCAAATACCTGTTCAACAACGTTAATCTGGCCTCGGTGTGGCGAGCAAAGTTACTAGAGCAACTGACAAAAAAGTTCAACA
TCAAGCTACCATCAGCCACACCTAAGAAGTGGGTTGTCGACTGCCAGCATGTTGGCAAAGGGCTGCCAGCGCTTAAATACCTATCACGCTATCTCTATCG
CGGCGTACTGCCTGACAAAAGCATCATAGGTACGACCGATGAACAAGTCTGCTTCGAGTATCAAAATAGCCAAACCAAAACCACTGAAATACGCACTTTA
CCTACAGTGAAGTTTCTATGGTTGGTACTACAACATGTATTACCCAAAGGGCTACGGCGAGTCAGAGATTATGGACTGTTGAGCGGTAACTGCAGCAAGC
TCAGGCAACAGATACAGCTCATGCTCGCTGTCGCTGGTGCGGTGTTTCCAATAATATCTGAGCTAAAGCGAACTGTGGCGATACGACTTTGTCCATGTTG
CCATCAGCCTATGTCATTTATCGGAATACATGCACGACCGGCAAGCTTACAAACACCAATAAGCAACACTGCCTAACGCCGCTGTTTAAGCGGTAAAGGT
CATGAGTTTAAGACTTAAGATACAGAAGCCGATGGACAAAAAGGAGGTGATTAAGGAGTTGATATATAAAGTTAATTAATTGGCTATCGATGCCAATGGG
TTGTTGCATCTTATAAAAAGTGACATAAACCAAACCCACCGACAGCGGCGTAAGTTCTTACGTCGATATTTACTATATAAAGGTATCACTTCTAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa101991+No
ORF function : Accessory Gene
AG : IS91 integrase/resolvase

ORF sequence :

MNPSEQQRFDCLYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYFDCCPDKLTTADLKRYFADLIASHSWSTVKLDRNGLQFFYRHVLNQAWQWLSIVKPP
QVNHLPDILTPAEVSMVISLTHKLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYYWQTHRHPRYLFPGKDG
KPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTTITRKNTVESINQLTNNLVLMWECEQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1089 bp362 aa9882076+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MKFIDILRDHLDEFNAHYQGYITTSMRQAIHAMLSCRTHSQKVSHWACQGCAHTADFPLSCGHRSCPQCQYNTTSDWLAKQQAKLLPVNYYMVTFTLPFE
LRVVAKHQPEVMYQAMFSVAASVLKEFAKNSKLLGGEIGFTGVLHTHNRRRDLHPHIHFIIPAGSFDKDRKQWHKSKGKYLFNNVNLASVWRAKLLEQLT
KKFNIKLPSATPKKWVVDCQHVGKGLPALKYLSRYLYRGVLPDKSIIGTTDEQVCFEYQNSQTKTTEIRTLPTVKFLWLVLQHVLPKGLRRVRDYGLLSG
NCSKLRQQIQLMLAVAGAVFPIISELKRTVAIRLCPCCHQPMSFIGIHARPASLQTPISNTA

 

Blast result :
Comments
There is one copy of ISSde12 encoded in Shewanella denitrificans.
The element encodes both a integrase and transposase.
These proteins have no more than 31% identity with proteins currently in ISfinder.
References
1] Romine, M. F. (2008) Direct submission.