ISSau9

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS21-558
Accession numberTranspositionOriginHost
AM086211 ND Staphylococcus aureus
Staphylococcus aureus plasmid pSCFS3
DNA section
IS Length : 2446 bp

Ends


IR Length : 21/27

IRL : TGTATATGTTAACTTAAAAGTGAGCCACCAACGCAATTGAAAAGTGAGCC
IRR : TGTATTTCGCAACTGAAAATTGAGCCATTTCGCAATTTAATTTTGAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTATATGTTAACTTAAAAGTGAGCCACCAACGCAATTGAAAAGTGAGCCACTTCTGTAGGAAAATAACCCTCGCACAATCGTTAGGGGGAACACAGGAG
TGATTACGTTGCACAAGAAGCCACAGGTGATTCAGCTGCATCTTCAAGATGTCAGCCAAAGACAAATTTCCACAGAAGTGAAGGTCTCTAGAAACACCGT
ATCCAAATATATCGAAGCCTTTGAGAAGAGTAAGGCGACCGATGTTCGTAACCTGCCGGTACAGAAGATATTTATCGCCTCCTCCTACAAGAAAAGGCTG
GAGTGAACGTAAATGACGGAAGAGATTGTGGAAAGGCTCAAGGGGTTCATTCAGGACAATGAATGGAAACGCAAAAACAACATGAGCAAGCAACAAATGA
AAAAGATTGATATGTATGAAAAACTGCAAGAAGAAGGGTACGATATCGGCTATACAACGGTTCGGAATTTCGTCAATAGCGAGGAGAGACGAACAAAAGA
GGTCTATATTCGCCAACGCTATTCAGCGGCCTGGGAAGTGGAATTTGATTGGGGAGAAGTAAAACTGGTGATTGACGGGAAACAGAAGTCCTATTCACTG
GCGGTCTTCACCTTGGCTTACAGCAATTACCGGTTTGCGCTGCTTTATGAATCCGAGACGATGATCTGCATACAGGATGCACATACCAAACTGATTGACC
ACTTAGGTTTCGTTCCCTCTGTTTTCACTTACGACAATATGCGAACCGTGGTGAAATCGTTTGTCGGAACAGACCGGAAAATCACGGATGGCATGATCAA
CCTCTCCAATTACTATGAATTCCGGATCCGGCTCTGCGAGCCAAGAAAAGGAAACCAGAAGGGGCATGTGGAACGGAGTGTGGAGGTTGTTCGCAGAAAA
GCATTTTCGTATGACATCGCATTCCCTTCTCTTGAAGACGCCCAGAAACGTCTAGCCCAAACCATTCTGTCGCTCAATAAACGGATTCACCATGAAAAGA
AACTCGCTCATATAGAATTGAAAGACCAGGAAAAAGTTGCCGCTGCTCAAGAGGCGCTTCCTCTGCCATTCGATGTTTCGGAAGTCGTGGAATGTCGGGT
AGATAAATATAGCACCGTCACGATTAAGCAAAATCGGTATTCCGTACCTGAAGGTCATGTAGGCGCATGGATTCGTGCAAAGGTAAGTGCGGATTCAGTC
CGTCTCTTTATTGAAGGGGAATTCGTCGCAGAACATCGGAGAAATTGGGGTGTTCATCAATGGGAAATGGATCTCTATCATTACATAAAAACTTTCACAA
AGAAAAAAGGCGCTTTAGCTCAAAGTGAATGTTTGAGCCAAGCACCAAATCAAATTAAAAAACTCTTCGAAAACCATTATATCGGAAAAGAGAAAGATTT
TCTAGAGCTACTCCTTTATGTACGTGAGAAAAATCAGTGGGATAACGTGATGGCTGCCGTCCGACAGATTGAGACAAAAGGTCTCGGGGACATCACGACC
GAAAAGCTAATCTTTCTGAGCGAACAAACAGATCTGGTACCTGCGGTACCGCTGCATCCAGACGAGACGGTCGAACAGGCGCTTCAAAACATTAAGGCCT
TTTCAGCGATGTTCAATCAAGTCGATGAAGGAGTGCTTGAACATGGATAAAAAGCAAAGCGTCATCGACCTGTGCAAAGAATTACGTCTTCCTGGCATCC
GTGAGTTGGTCGAAGAAGACGTAGCATTCCAGGAAACGACACCTGCGATTGACCTGTTACACACCGTGTTAACGAAGGAAAAGAATGACCGCTGGATCCG
GTCTAAATCCACACGGATCCGCCGTGCGAACTTTCCGGAGAAAAAGCTGCTGGAGGAGATTGATACTCGAGCGCTGCCGACAGATGCGCAGCAAAAACTG
CCCAACTTACAGACGCTCGATTTCATCAAAGCTGGACAGAATGTGATTCTGACCGGTTCTCCAGGAACCGGCAAGAGCCACCTGGCGATCGGCTTAGGGG
TAGAAGCTTGTTTAGCGGGCTACAAGGTTTATTTCGCCAGTGTCTCGTCCTTAATCAATCAGTTGAAGGAAAGCCGGTCCGAAAGGACCTTACGCTCTTT
CGAATTGCGATTTGAGAAATATGACCTCGTTATCATTGATGAATTACGCTACATTTCCTTCGATAAAGAAGGGGCTGAATTACTGTTTACACATTTGTCG
TTGCGTGCTGGTCGATCCTCAACCATTATTACGAGCAACCTGTCTTTTGCGAAATGGGAAGAGGTATTCCATGATCCTATTTTGACCGCCGCATTGACGG
ATCGCTTGACGCATAAATCGCACGTGGTGAATATGATCGGCCCATCTTACCGAATGAGAGAAACGCAAAAGTGGCTTGAAAATAGCCATTCATAAGTGGC
TCAAAATTAAATTGCGAAATGGCTCAATTTTCAGTTGCGAAATACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa3131650+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTEEIVERLKGFIQDNEWKRKNNMSKQQMKKIDMYEKLQEEGYDIGYTTVRNFVNSEERRTKEVYIRQRYSAAWEVEFDWGEVKLVIDGKQKSYSLAVFT
LAYSNYRFALLYESETMICIQDAHTKLIDHLGFVPSVFTYDNMRTVVKSFVGTDRKITDGMINLSNYYEFRIRLCEPRKGNQKGHVERSVEVVRRKAFSY
DIAFPSLEDAQKRLAQTILSLNKRIHHEKKLAHIELKDQEKVAAAQEALPLPFDVSEVVECRVDKYSTVTIKQNRYSVPEGHVGAWIRAKVSADSVRLFI
EGEFVAEHRRNWGVHQWEMDLYHYIKTFTKKKGALAQSECLSQAPNQIKKLFENHYIGKEKDFLELLLYVREKNQWDNVMAAVRQIETKGLGDITTEKLI
FLSEQTDLVPAVPLHPDETVEQALQNIKAFSAMFNQVDEGVLEHG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
753 bp250 aa16432395+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MDKKQSVIDLCKELRLPGIRELVEEDVAFQETTPAIDLLHTVLTKEKNDRWIRSKSTRIRRANFPEKKLLEEIDTRALPTDAQQKLPNLQTLDFIKAGQN
VILTGSPGTGKSHLAIGLGVEACLAGYKVYFASVSSLINQLKESRSERTLRSFELRFEKYDLVIIDELRYISFDKEGAELLFTHLSLRAGRSSTIITSNL
SFAKWEEVFHDPILTAALTDRLTHKSHVVNMIGPSYRMRETQKWLENSHS

 

Blast result :
Comments
ISSau9 is 43% (ORF 1) aa similar to IS1600 and 59% (ORF 2) to ISMac3.
References
1] Kehrenberg,C. and Schwarz,S. (2006) Antimicrob. Agents Chemother. 50 (4), 1156-1163