ISSau9
- Family IS21
- Group
Isoform Synonym(s) IS21-558
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM086211 | ND | Staphylococcus aureus | Staphylococcus aureus plasmid pSCFS3 |
DNA section
IS Length : 2446 bp
Ends
IR Length : 21/27
IRL : TGTATATGTTAACTTAAAAGTGAGCCACCAACGCAATTGAAAAGTGAGCC
IRR : TGTATTTCGCAACTGAAAATTGAGCCATTTCGCAATTTAATTTTGAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTATATGTTAACTTAAAAGTGAGCCACCAACGCAATTGAAAAGTGAGCCACTTCTGTAGGAAAATAACCCTCGCACAATCGTTAGGGGGAACACAGGAG
TGATTACGTTGCACAAGAAGCCACAGGTGATTCAGCTGCATCTTCAAGATGTCAGCCAAAGACAAATTTCCACAGAAGTGAAGGTCTCTAGAAACACCGT
ATCCAAATATATCGAAGCCTTTGAGAAGAGTAAGGCGACCGATGTTCGTAACCTGCCGGTACAGAAGATATTTATCGCCTCCTCCTACAAGAAAAGGCTG
GAGTGAACGTAAATGACGGAAGAGATTGTGGAAAGGCTCAAGGGGTTCATTCAGGACAATGAATGGAAACGCAAAAACAACATGAGCAAGCAACAAATGA
AAAAGATTGATATGTATGAAAAACTGCAAGAAGAAGGGTACGATATCGGCTATACAACGGTTCGGAATTTCGTCAATAGCGAGGAGAGACGAACAAAAGA
GGTCTATATTCGCCAACGCTATTCAGCGGCCTGGGAAGTGGAATTTGATTGGGGAGAAGTAAAACTGGTGATTGACGGGAAACAGAAGTCCTATTCACTG
GCGGTCTTCACCTTGGCTTACAGCAATTACCGGTTTGCGCTGCTTTATGAATCCGAGACGATGATCTGCATACAGGATGCACATACCAAACTGATTGACC
ACTTAGGTTTCGTTCCCTCTGTTTTCACTTACGACAATATGCGAACCGTGGTGAAATCGTTTGTCGGAACAGACCGGAAAATCACGGATGGCATGATCAA
CCTCTCCAATTACTATGAATTCCGGATCCGGCTCTGCGAGCCAAGAAAAGGAAACCAGAAGGGGCATGTGGAACGGAGTGTGGAGGTTGTTCGCAGAAAA
GCATTTTCGTATGACATCGCATTCCCTTCTCTTGAAGACGCCCAGAAACGTCTAGCCCAAACCATTCTGTCGCTCAATAAACGGATTCACCATGAAAAGA
AACTCGCTCATATAGAATTGAAAGACCAGGAAAAAGTTGCCGCTGCTCAAGAGGCGCTTCCTCTGCCATTCGATGTTTCGGAAGTCGTGGAATGTCGGGT
AGATAAATATAGCACCGTCACGATTAAGCAAAATCGGTATTCCGTACCTGAAGGTCATGTAGGCGCATGGATTCGTGCAAAGGTAAGTGCGGATTCAGTC
CGTCTCTTTATTGAAGGGGAATTCGTCGCAGAACATCGGAGAAATTGGGGTGTTCATCAATGGGAAATGGATCTCTATCATTACATAAAAACTTTCACAA
AGAAAAAAGGCGCTTTAGCTCAAAGTGAATGTTTGAGCCAAGCACCAAATCAAATTAAAAAACTCTTCGAAAACCATTATATCGGAAAAGAGAAAGATTT
TCTAGAGCTACTCCTTTATGTACGTGAGAAAAATCAGTGGGATAACGTGATGGCTGCCGTCCGACAGATTGAGACAAAAGGTCTCGGGGACATCACGACC
GAAAAGCTAATCTTTCTGAGCGAACAAACAGATCTGGTACCTGCGGTACCGCTGCATCCAGACGAGACGGTCGAACAGGCGCTTCAAAACATTAAGGCCT
TTTCAGCGATGTTCAATCAAGTCGATGAAGGAGTGCTTGAACATGGATAAAAAGCAAAGCGTCATCGACCTGTGCAAAGAATTACGTCTTCCTGGCATCC
GTGAGTTGGTCGAAGAAGACGTAGCATTCCAGGAAACGACACCTGCGATTGACCTGTTACACACCGTGTTAACGAAGGAAAAGAATGACCGCTGGATCCG
GTCTAAATCCACACGGATCCGCCGTGCGAACTTTCCGGAGAAAAAGCTGCTGGAGGAGATTGATACTCGAGCGCTGCCGACAGATGCGCAGCAAAAACTG
CCCAACTTACAGACGCTCGATTTCATCAAAGCTGGACAGAATGTGATTCTGACCGGTTCTCCAGGAACCGGCAAGAGCCACCTGGCGATCGGCTTAGGGG
TAGAAGCTTGTTTAGCGGGCTACAAGGTTTATTTCGCCAGTGTCTCGTCCTTAATCAATCAGTTGAAGGAAAGCCGGTCCGAAAGGACCTTACGCTCTTT
CGAATTGCGATTTGAGAAATATGACCTCGTTATCATTGATGAATTACGCTACATTTCCTTCGATAAAGAAGGGGCTGAATTACTGTTTACACATTTGTCG
TTGCGTGCTGGTCGATCCTCAACCATTATTACGAGCAACCTGTCTTTTGCGAAATGGGAAGAGGTATTCCATGATCCTATTTTGACCGCCGCATTGACGG
ATCGCTTGACGCATAAATCGCACGTGGTGAATATGATCGGCCCATCTTACCGAATGAGAGAAACGCAAAAGTGGCTTGAAAATAGCCATTCATAAGTGGC
TCAAAATTAAATTGCGAAATGGCTCAATTTTCAGTTGCGAAATACA
TGATTACGTTGCACAAGAAGCCACAGGTGATTCAGCTGCATCTTCAAGATGTCAGCCAAAGACAAATTTCCACAGAAGTGAAGGTCTCTAGAAACACCGT
ATCCAAATATATCGAAGCCTTTGAGAAGAGTAAGGCGACCGATGTTCGTAACCTGCCGGTACAGAAGATATTTATCGCCTCCTCCTACAAGAAAAGGCTG
GAGTGAACGTAAATGACGGAAGAGATTGTGGAAAGGCTCAAGGGGTTCATTCAGGACAATGAATGGAAACGCAAAAACAACATGAGCAAGCAACAAATGA
AAAAGATTGATATGTATGAAAAACTGCAAGAAGAAGGGTACGATATCGGCTATACAACGGTTCGGAATTTCGTCAATAGCGAGGAGAGACGAACAAAAGA
GGTCTATATTCGCCAACGCTATTCAGCGGCCTGGGAAGTGGAATTTGATTGGGGAGAAGTAAAACTGGTGATTGACGGGAAACAGAAGTCCTATTCACTG
GCGGTCTTCACCTTGGCTTACAGCAATTACCGGTTTGCGCTGCTTTATGAATCCGAGACGATGATCTGCATACAGGATGCACATACCAAACTGATTGACC
ACTTAGGTTTCGTTCCCTCTGTTTTCACTTACGACAATATGCGAACCGTGGTGAAATCGTTTGTCGGAACAGACCGGAAAATCACGGATGGCATGATCAA
CCTCTCCAATTACTATGAATTCCGGATCCGGCTCTGCGAGCCAAGAAAAGGAAACCAGAAGGGGCATGTGGAACGGAGTGTGGAGGTTGTTCGCAGAAAA
GCATTTTCGTATGACATCGCATTCCCTTCTCTTGAAGACGCCCAGAAACGTCTAGCCCAAACCATTCTGTCGCTCAATAAACGGATTCACCATGAAAAGA
AACTCGCTCATATAGAATTGAAAGACCAGGAAAAAGTTGCCGCTGCTCAAGAGGCGCTTCCTCTGCCATTCGATGTTTCGGAAGTCGTGGAATGTCGGGT
AGATAAATATAGCACCGTCACGATTAAGCAAAATCGGTATTCCGTACCTGAAGGTCATGTAGGCGCATGGATTCGTGCAAAGGTAAGTGCGGATTCAGTC
CGTCTCTTTATTGAAGGGGAATTCGTCGCAGAACATCGGAGAAATTGGGGTGTTCATCAATGGGAAATGGATCTCTATCATTACATAAAAACTTTCACAA
AGAAAAAAGGCGCTTTAGCTCAAAGTGAATGTTTGAGCCAAGCACCAAATCAAATTAAAAAACTCTTCGAAAACCATTATATCGGAAAAGAGAAAGATTT
TCTAGAGCTACTCCTTTATGTACGTGAGAAAAATCAGTGGGATAACGTGATGGCTGCCGTCCGACAGATTGAGACAAAAGGTCTCGGGGACATCACGACC
GAAAAGCTAATCTTTCTGAGCGAACAAACAGATCTGGTACCTGCGGTACCGCTGCATCCAGACGAGACGGTCGAACAGGCGCTTCAAAACATTAAGGCCT
TTTCAGCGATGTTCAATCAAGTCGATGAAGGAGTGCTTGAACATGGATAAAAAGCAAAGCGTCATCGACCTGTGCAAAGAATTACGTCTTCCTGGCATCC
GTGAGTTGGTCGAAGAAGACGTAGCATTCCAGGAAACGACACCTGCGATTGACCTGTTACACACCGTGTTAACGAAGGAAAAGAATGACCGCTGGATCCG
GTCTAAATCCACACGGATCCGCCGTGCGAACTTTCCGGAGAAAAAGCTGCTGGAGGAGATTGATACTCGAGCGCTGCCGACAGATGCGCAGCAAAAACTG
CCCAACTTACAGACGCTCGATTTCATCAAAGCTGGACAGAATGTGATTCTGACCGGTTCTCCAGGAACCGGCAAGAGCCACCTGGCGATCGGCTTAGGGG
TAGAAGCTTGTTTAGCGGGCTACAAGGTTTATTTCGCCAGTGTCTCGTCCTTAATCAATCAGTTGAAGGAAAGCCGGTCCGAAAGGACCTTACGCTCTTT
CGAATTGCGATTTGAGAAATATGACCTCGTTATCATTGATGAATTACGCTACATTTCCTTCGATAAAGAAGGGGCTGAATTACTGTTTACACATTTGTCG
TTGCGTGCTGGTCGATCCTCAACCATTATTACGAGCAACCTGTCTTTTGCGAAATGGGAAGAGGTATTCCATGATCCTATTTTGACCGCCGCATTGACGG
ATCGCTTGACGCATAAATCGCACGTGGTGAATATGATCGGCCCATCTTACCGAATGAGAGAAACGCAAAAGTGGCTTGAAAATAGCCATTCATAAGTGGC
TCAAAATTAAATTGCGAAATGGCTCAATTTTCAGTTGCGAAATACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 313 | 1650 | + | No |
Chemistry : DDE
ORF sequence :
MTEEIVERLKGFIQDNEWKRKNNMSKQQMKKIDMYEKLQEEGYDIGYTTVRNFVNSEERRTKEVYIRQRYSAAWEVEFDWGEVKLVIDGKQKSYSLAVFT
LAYSNYRFALLYESETMICIQDAHTKLIDHLGFVPSVFTYDNMRTVVKSFVGTDRKITDGMINLSNYYEFRIRLCEPRKGNQKGHVERSVEVVRRKAFSY
DIAFPSLEDAQKRLAQTILSLNKRIHHEKKLAHIELKDQEKVAAAQEALPLPFDVSEVVECRVDKYSTVTIKQNRYSVPEGHVGAWIRAKVSADSVRLFI
EGEFVAEHRRNWGVHQWEMDLYHYIKTFTKKKGALAQSECLSQAPNQIKKLFENHYIGKEKDFLELLLYVREKNQWDNVMAAVRQIETKGLGDITTEKLI
FLSEQTDLVPAVPLHPDETVEQALQNIKAFSAMFNQVDEGVLEHG
LAYSNYRFALLYESETMICIQDAHTKLIDHLGFVPSVFTYDNMRTVVKSFVGTDRKITDGMINLSNYYEFRIRLCEPRKGNQKGHVERSVEVVRRKAFSY
DIAFPSLEDAQKRLAQTILSLNKRIHHEKKLAHIELKDQEKVAAAQEALPLPFDVSEVVECRVDKYSTVTIKQNRYSVPEGHVGAWIRAKVSADSVRLFI
EGEFVAEHRRNWGVHQWEMDLYHYIKTFTKKKGALAQSECLSQAPNQIKKLFENHYIGKEKDFLELLLYVREKNQWDNVMAAVRQIETKGLGDITTEKLI
FLSEQTDLVPAVPLHPDETVEQALQNIKAFSAMFNQVDEGVLEHG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 1643 | 2395 | + | No |
AG : IS21 helper
ORF sequence :
MDKKQSVIDLCKELRLPGIRELVEEDVAFQETTPAIDLLHTVLTKEKNDRWIRSKSTRIRRANFPEKKLLEEIDTRALPTDAQQKLPNLQTLDFIKAGQN
VILTGSPGTGKSHLAIGLGVEACLAGYKVYFASVSSLINQLKESRSERTLRSFELRFEKYDLVIIDELRYISFDKEGAELLFTHLSLRAGRSSTIITSNL
SFAKWEEVFHDPILTAALTDRLTHKSHVVNMIGPSYRMRETQKWLENSHS
VILTGSPGTGKSHLAIGLGVEACLAGYKVYFASVSSLINQLKESRSERTLRSFELRFEKYDLVIIDELRYISFDKEGAELLFTHLSLRAGRSSTIITSNL
SFAKWEEVFHDPILTAALTDRLTHKSHVVNMIGPSYRMRETQKWLENSHS
Blast result :
Comments
ISSau9 is 43% (ORF 1) aa similar to IS1600 and 59% (ORF 2) to ISMac3.
References
1] Kehrenberg,C. and Schwarz,S. (2006) Antimicrob. Agents Chemother. 50 (4), 1156-1163