ISRso21
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 2032 bp
Ends
IR Length : 20/25
IRL : GGCTCTACGGAATATCGTGTGTAAATGTGCATATTCGTCTACAATCACAA
IRR : GGCTCAACGGATTACTGTGTGGAAAGTGAATCATGCTGACTAGCACTGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTACGGAATATCGTGTGTAAATGTGCATATTCGTCTACAATCACAAAACGGAATAACGTGTGGAAAGGCGATTGCGCATGGCTACTGAAGAACAAC
TGATGCTTGACCTTACGATTGGTGGGCGCCGAGTCCTTGACCCTTGCTGTGGCAGCAGGATGTTCTGGTTCGACAGGCAGAATCCGGACGTGGTGTATGG
CGATAAACGGTCAGAGAGCCATGTGCTATGCGACGGTCGAACACTGCGAATCGAGCCTGACATGCTGCTGGACTTCACCGATATGCCATTCGACGATGGC
AGCTTCAAACTGGTGGTTTTTGACCCGCCGCATTTGCACACTGCCGGTCCGAGAAGTTGGATGACGAAGAAGTACGGCAAGCTGTCGGAAACTTGGCAGG
AAGACATCCGCAAGGGGTTCAGCGAATGCTTCCGGGTGCTGGCCAGCGATGGTGTCTTGGTCTTCAAGTGGAATGAAACCCAGGTGAAGATTCGGGAAGT
TCTCGCTCTTACCGACGTGCAGCCTCTGTTCGGCCATCCGACTGGACGTAAAGGGCTGACGCATTGGTACGTTTTCATGAAGCCGTCCGAGGTAGTTTGA
TGACCGACATCCTTGACCTGGATGGCTGGACCGTCATCAACAAGCGCCTTGACGGCGACGAATACGAGATTGAGGCCGAGTACACCATCAGCCCCGACTT
TTGCCAGAAGTGTGGCGTCGTTGGCGGCCTGTACCGCCATGGCCCGAAGCCCATAACCATCCGCGACAGCCCTATCCGAGGCCGGCACGTGCGCATCCTG
GCCAGGGCAAAACGGTTCAAGTGCCGGGAATGCGGGGGCACGTTCATCCAGCCGCTGGGCGGCATCCACGGCGCCATGCGGATGACAGAGCGGTGCGTCG
AGTACATCCAGTCTCAATGCCTGCGCGACACCTTCGTGCGCGTGGCTGAGCATATTGGCTGCGATGACAAGACCGTCCGCACCTTGGCGGGCGACTACAT
CGAGCAGCTCAACGCCGAATACAAGCCTTGGCTGCCAGAGTGGCTGGGCATTGATGAGACGCAGATTGACGGGAAGCTCAGGTGCATCGTCACTGATGTC
GCCAACCGGGTCCCGATTGACATGCTGCCCGACCGCGACAAGCCGCTGGTCACGGCCTGGCTGCATCGATTCAAGGACCGAAGCGTCGTCAAGGGCTTGG
CCATCGACATGTGGAGGCCATACAAGGATGCCGCCCAGTCTGTCTTCCCTGGGCTGCCCGTGGTTATCGACAGGTTCCACCTGGTCAGGATGGCGAATCA
AGCCATGGATGCCGTCCGAATTTCGCTTGCCAAGGACCAGGAAAAGGCTGTTGGCAGAGACTGGATGCGGCGCAAATCCTTGCTCCGGATGCGTTACAAG
AACCTGGACGAGAAGGGGCGTTTCAACCTCCAGATGTGGCTGGACAACGAGCCGCACGTGGCAACCGCCTACCGCCTCAAGGAGTCGTTCTACGACATAT
ACGATGCTCCGACCAGGGCGGAAGCTGCCGGCCGGCTTGATGCCTGGCGCAAGTCCGTCCCAGCGGACATGAAGAAGGGAAAGAAGAGCTTCCAGCCGCT
GCTGACGGCCACCAGGAACTGGCGTGAGGAGATGCTGGCCTACTTCGACCACCCGATTTCGAATGGTTATACGGAAGCCCTCAACGGGGTCGCCAAGGTC
ATCAATCGAGCTGGACGGGGCTACAGCTTTGATGTCCTGCGCGCCCGCCTTCTGTTCAAGAACCGGGAGAGAGCCCAGCCGCCGGCGGTCGTTGAGCAGT
TGATGAGCCGCTCCACGCCGGCCCATGAGACGCTGATGGAAGCGCTCGGGAACCGGTGCGAATCGTGCCAGGGTGTGTTCGAAAGCTGGATGCTGGAGTC
CCACCACGTTCGCCCAGTCGTTCCTGGCGAGCACACAAGAAGGCTGTATCTCTGCCCGACCTGCCATAGGCGTTTCCACACGGACAGTGCTAGTCAGCAT
GATTCACTTTCCACACAGTAATCCGTTGAGCC
TGATGCTTGACCTTACGATTGGTGGGCGCCGAGTCCTTGACCCTTGCTGTGGCAGCAGGATGTTCTGGTTCGACAGGCAGAATCCGGACGTGGTGTATGG
CGATAAACGGTCAGAGAGCCATGTGCTATGCGACGGTCGAACACTGCGAATCGAGCCTGACATGCTGCTGGACTTCACCGATATGCCATTCGACGATGGC
AGCTTCAAACTGGTGGTTTTTGACCCGCCGCATTTGCACACTGCCGGTCCGAGAAGTTGGATGACGAAGAAGTACGGCAAGCTGTCGGAAACTTGGCAGG
AAGACATCCGCAAGGGGTTCAGCGAATGCTTCCGGGTGCTGGCCAGCGATGGTGTCTTGGTCTTCAAGTGGAATGAAACCCAGGTGAAGATTCGGGAAGT
TCTCGCTCTTACCGACGTGCAGCCTCTGTTCGGCCATCCGACTGGACGTAAAGGGCTGACGCATTGGTACGTTTTCATGAAGCCGTCCGAGGTAGTTTGA
TGACCGACATCCTTGACCTGGATGGCTGGACCGTCATCAACAAGCGCCTTGACGGCGACGAATACGAGATTGAGGCCGAGTACACCATCAGCCCCGACTT
TTGCCAGAAGTGTGGCGTCGTTGGCGGCCTGTACCGCCATGGCCCGAAGCCCATAACCATCCGCGACAGCCCTATCCGAGGCCGGCACGTGCGCATCCTG
GCCAGGGCAAAACGGTTCAAGTGCCGGGAATGCGGGGGCACGTTCATCCAGCCGCTGGGCGGCATCCACGGCGCCATGCGGATGACAGAGCGGTGCGTCG
AGTACATCCAGTCTCAATGCCTGCGCGACACCTTCGTGCGCGTGGCTGAGCATATTGGCTGCGATGACAAGACCGTCCGCACCTTGGCGGGCGACTACAT
CGAGCAGCTCAACGCCGAATACAAGCCTTGGCTGCCAGAGTGGCTGGGCATTGATGAGACGCAGATTGACGGGAAGCTCAGGTGCATCGTCACTGATGTC
GCCAACCGGGTCCCGATTGACATGCTGCCCGACCGCGACAAGCCGCTGGTCACGGCCTGGCTGCATCGATTCAAGGACCGAAGCGTCGTCAAGGGCTTGG
CCATCGACATGTGGAGGCCATACAAGGATGCCGCCCAGTCTGTCTTCCCTGGGCTGCCCGTGGTTATCGACAGGTTCCACCTGGTCAGGATGGCGAATCA
AGCCATGGATGCCGTCCGAATTTCGCTTGCCAAGGACCAGGAAAAGGCTGTTGGCAGAGACTGGATGCGGCGCAAATCCTTGCTCCGGATGCGTTACAAG
AACCTGGACGAGAAGGGGCGTTTCAACCTCCAGATGTGGCTGGACAACGAGCCGCACGTGGCAACCGCCTACCGCCTCAAGGAGTCGTTCTACGACATAT
ACGATGCTCCGACCAGGGCGGAAGCTGCCGGCCGGCTTGATGCCTGGCGCAAGTCCGTCCCAGCGGACATGAAGAAGGGAAAGAAGAGCTTCCAGCCGCT
GCTGACGGCCACCAGGAACTGGCGTGAGGAGATGCTGGCCTACTTCGACCACCCGATTTCGAATGGTTATACGGAAGCCCTCAACGGGGTCGCCAAGGTC
ATCAATCGAGCTGGACGGGGCTACAGCTTTGATGTCCTGCGCGCCCGCCTTCTGTTCAAGAACCGGGAGAGAGCCCAGCCGCCGGCGGTCGTTGAGCAGT
TGATGAGCCGCTCCACGCCGGCCCATGAGACGCTGATGGAAGCGCTCGGGAACCGGTGCGAATCGTGCCAGGGTGTGTTCGAAAGCTGGATGCTGGAGTC
CCACCACGTTCGCCCAGTCGTTCCTGGCGAGCACACAAGAAGGCTGTATCTCTGCCCGACCTGCCATAGGCGTTTCCACACGGACAGTGCTAGTCAGCAT
GATTCACTTTCCACACAGTAATCCGTTGAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
519 bp | 172 aa | 82 | 600 | + | No |
Annotation : Putative methyltransferaseDescription :
ORF sequence :
MATEEQLMLDLTIGGRRVLDPCCGSRMFWFDRQNPDVVYGDKRSESHVLCDGRTLRIEPDMLLDFTDMPFDDGSFKLVVFDPPHLHTAGPRSWMTKKYGK
LSETWQEDIRKGFSECFRVLASDGVLVFKWNETQVKIREVLALTDVQPLFGHPTGRKGLTHWYVFMKPSEVV
LSETWQEDIRKGFSECFRVLASDGVLVFKWNETQVKIREVLALTDVQPLFGHPTGRKGLTHWYVFMKPSEVV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 600 | 2021 | + | No |
Chemistry : Unknow
ORF sequence :
MTDILDLDGWTVINKRLDGDEYEIEAEYTISPDFCQKCGVVGGLYRHGPKPITIRDSPIRGRHVRILARAKRFKCRECGGTFIQPLGGIHGAMRMTERCV
EYIQSQCLRDTFVRVAEHIGCDDKTVRTLAGDYIEQLNAEYKPWLPEWLGIDETQIDGKLRCIVTDVANRVPIDMLPDRDKPLVTAWLHRFKDRSVVKGL
AIDMWRPYKDAAQSVFPGLPVVIDRFHLVRMANQAMDAVRISLAKDQEKAVGRDWMRRKSLLRMRYKNLDEKGRFNLQMWLDNEPHVATAYRLKESFYDI
YDAPTRAEAAGRLDAWRKSVPADMKKGKKSFQPLLTATRNWREEMLAYFDHPISNGYTEALNGVAKVINRAGRGYSFDVLRARLLFKNRERAQPPAVVEQ
LMSRSTPAHETLMEALGNRCESCQGVFESWMLESHHVRPVVPGEHTRRLYLCPTCHRRFHTDSASQHDSLSTQ
EYIQSQCLRDTFVRVAEHIGCDDKTVRTLAGDYIEQLNAEYKPWLPEWLGIDETQIDGKLRCIVTDVANRVPIDMLPDRDKPLVTAWLHRFKDRSVVKGL
AIDMWRPYKDAAQSVFPGLPVVIDRFHLVRMANQAMDAVRISLAKDQEKAVGRDWMRRKSLLRMRYKNLDEKGRFNLQMWLDNEPHVATAYRLKESFYDI
YDAPTRAEAAGRLDAWRKSVPADMKKGKKSFQPLLTATRNWREEMLAYFDHPISNGYTEALNGVAKVINRAGRGYSFDVLRARLLFKNRERAQPPAVVEQ
LMSRSTPAHETLMEALGNRCESCQGVFESWMLESHHVRPVVPGEHTRRLYLCPTCHRRFHTDSASQHDSLSTQ
Blast result :
Comments
ISRso21 ORF1 is a putative methyltransferase, and ISRso21 ORF2 a transposase.
The ISRso21 transposase is 57% aa similar to ISPpu12 transposase.
The ISRso21 transposase is 57% aa similar to ISPpu12 transposase.
References
1] JianMei CHE (2011) Direct submission