ISRm32

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010865 ND Sinorhizobium meliloti
Sinorhizobium meliloti plasmid pSmeSM11b
DNA section
IS Length : 1190 bp

Ends


IR Length : 22/23

IRL : GGCCTTTATCAACGAAAGACAGCAATATACTTGCTAACCAAGGGTTGCCA
IRR : GGCCTTTATCAACCAAAGACAGCGACTGCTGATTTGACGATGATCCCACC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCGTTGAAAGTACGCCAAGCAACGCTAAGGGCGAACAAA8
TATGGTCTGTTCGACCTTAACGTACGATTTTGCACTGCTCTT8

DNA sequence

GGCCTTTATCAACGAAAGACAGCAATATACTTGCTAACCAAGGGTTGCCATGCGATTCTTCGGACGTGACCGAAGGAGATGAGAATGTCGGAAACGATGC
TTGCAGCACTTACCAACATTCGGACCGCGGAAGATATGATCGTGGCCTTTCGCGATGAGGAGCAGTGTCGGAGATTGCTGGAAAGCATGGTGTGGCCGGC
CGGAAGAGTCTGCCCTGCCTGTGGTTACAAGCGCTCGATCGCAATCGCCGGGCGCGATATGGGCAAGCGACGTGCGCGTCCGGGTCTCTATCAATGCTCC
AGCGGCGATTGTCGCTTTCAGTTTACGGTGACGACACACACGCCGCTGCATTCCACAAAGCTTCCTCTGAGTGTCTGGCTGAAGGGCATGTGGCTTATGC
TGCAGTCGGATAAAGGTTTGTCCTCGGTGCGCCTGGCCGAGGCTCTGGGGGTGAGCCAGCCGACGGCCTGGCGGATGGGACACGCGCTGCGTCTCATGGC
GGCGCGCGAGCACATGCTCGATGGCACGGTGGAGATCGACCATTTTTATCTCGGTGGGCGAGCAAGAATAAATCCGGACGATCCACCGCCTGGACGAGGC
CGAAAAGGTCTGCCGAATACCCAGAAGACGCCTGTCATGGTGATCGTTCAACGGCCAGATGACGTCACACCCGGCACTCCGGCCGGTGACGCGCGTGCTG
CGGTGGTGACTGGTCTTTCGCTCCGTGCAGCGGCGCGCGCCGCCGAAGCGCAGATCGACCCCGACGCCTATTTGATGAGCGATGAGGCGACAGCGTTCAT
AGCCCTTGGCGAGAACTATGCCAGGCATGACACCGTGAAGCATTCCAGCCGCGAATACGTTCGTAACGCCGTTCATGTCAATTCGGTCGAAGGTTTCAAT
GCCCGCGTCCGCCGCACAATTGCCGGTGTCTTTCATCATATCAGCCCGCAGCATGCCGACCTGTATTTCCACGAGATTGGCTTCCGCTGGTCACAGCGCA
TTGTTACGGGCCAGGCGGTGCGGAAAAGCCGAAACGGCAAGGAACGCATGAAAACCCTGTGGTCGCGGGTGCCGCCGGCGCTGCAATTGCTGCAAGTCTT
TCGCGTGGCTACCGGCCGCCAAATGCGCAGAAGCCCGGATGGTGGGATCATCGTCAAATCAGCAGTCGCTGTCTTTGGTTGATAAAGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa851182+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSETMLAALTNIRTAEDMIVAFRDEEQCRRLLESMVWPAGRVCPACGYKRSIAIAGRDMGKRRARPGLYQCSSGDCRFQFTVTTHTPLHSTKLPLSVWLK
GMWLMLQSDKGLSSVRLAEALGVSQPTAWRMGHALRLMAAREHMLDGTVEIDHFYLGGRARINPDDPPPGRGRKGLPNTQKTPVMVIVQRPDDVTPGTPA
GDARAAVVTGLSLRAAARAAEAQIDPDAYLMSDEATAFIALGENYARHDTVKHSSREYVRNAVHVNSVEGFNARVRRTIAGVFHHISPQHADLYFHEIGF
RWSQRIVTGQAVRKSRNGKERMKTLWSRVPPALQLLQVFRVATGRQMRRSPDGGIIVKSAVAVFG

 

Blast result :
Comments
ISRm32 is 54% aa similar to ISSpo8. There are two copies of ISRm32 in this plasmid and they may form a composite transposon TnSmeSM11b.
References
1] Stiens,M., Schneiker,S., Puhler,A. and Schluter,A. (2007) FEMS Microbiol. Lett. 271 (2), 297-309
2] ISfinder annotation