ISRm32
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010865 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti plasmid pSmeSM11b |
DNA section
IS Length : 1190 bp
Ends
IR Length : 22/23
IRL : GGCCTTTATCAACGAAAGACAGCAATATACTTGCTAACCAAGGGTTGCCA
IRR : GGCCTTTATCAACCAAAGACAGCGACTGCTGATTTGACGATGATCCCACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGCGTTGAAAGTACGCCA | AGCAACGC | TAAGGGCGAACAAA | 8 |
TATGGTCTGTTCGACCTTA | ACGTACGA | TTTTGCACTGCTCTT | 8 |
DNA sequence
GGCCTTTATCAACGAAAGACAGCAATATACTTGCTAACCAAGGGTTGCCATGCGATTCTTCGGACGTGACCGAAGGAGATGAGAATGTCGGAAACGATGC
TTGCAGCACTTACCAACATTCGGACCGCGGAAGATATGATCGTGGCCTTTCGCGATGAGGAGCAGTGTCGGAGATTGCTGGAAAGCATGGTGTGGCCGGC
CGGAAGAGTCTGCCCTGCCTGTGGTTACAAGCGCTCGATCGCAATCGCCGGGCGCGATATGGGCAAGCGACGTGCGCGTCCGGGTCTCTATCAATGCTCC
AGCGGCGATTGTCGCTTTCAGTTTACGGTGACGACACACACGCCGCTGCATTCCACAAAGCTTCCTCTGAGTGTCTGGCTGAAGGGCATGTGGCTTATGC
TGCAGTCGGATAAAGGTTTGTCCTCGGTGCGCCTGGCCGAGGCTCTGGGGGTGAGCCAGCCGACGGCCTGGCGGATGGGACACGCGCTGCGTCTCATGGC
GGCGCGCGAGCACATGCTCGATGGCACGGTGGAGATCGACCATTTTTATCTCGGTGGGCGAGCAAGAATAAATCCGGACGATCCACCGCCTGGACGAGGC
CGAAAAGGTCTGCCGAATACCCAGAAGACGCCTGTCATGGTGATCGTTCAACGGCCAGATGACGTCACACCCGGCACTCCGGCCGGTGACGCGCGTGCTG
CGGTGGTGACTGGTCTTTCGCTCCGTGCAGCGGCGCGCGCCGCCGAAGCGCAGATCGACCCCGACGCCTATTTGATGAGCGATGAGGCGACAGCGTTCAT
AGCCCTTGGCGAGAACTATGCCAGGCATGACACCGTGAAGCATTCCAGCCGCGAATACGTTCGTAACGCCGTTCATGTCAATTCGGTCGAAGGTTTCAAT
GCCCGCGTCCGCCGCACAATTGCCGGTGTCTTTCATCATATCAGCCCGCAGCATGCCGACCTGTATTTCCACGAGATTGGCTTCCGCTGGTCACAGCGCA
TTGTTACGGGCCAGGCGGTGCGGAAAAGCCGAAACGGCAAGGAACGCATGAAAACCCTGTGGTCGCGGGTGCCGCCGGCGCTGCAATTGCTGCAAGTCTT
TCGCGTGGCTACCGGCCGCCAAATGCGCAGAAGCCCGGATGGTGGGATCATCGTCAAATCAGCAGTCGCTGTCTTTGGTTGATAAAGGCC
TTGCAGCACTTACCAACATTCGGACCGCGGAAGATATGATCGTGGCCTTTCGCGATGAGGAGCAGTGTCGGAGATTGCTGGAAAGCATGGTGTGGCCGGC
CGGAAGAGTCTGCCCTGCCTGTGGTTACAAGCGCTCGATCGCAATCGCCGGGCGCGATATGGGCAAGCGACGTGCGCGTCCGGGTCTCTATCAATGCTCC
AGCGGCGATTGTCGCTTTCAGTTTACGGTGACGACACACACGCCGCTGCATTCCACAAAGCTTCCTCTGAGTGTCTGGCTGAAGGGCATGTGGCTTATGC
TGCAGTCGGATAAAGGTTTGTCCTCGGTGCGCCTGGCCGAGGCTCTGGGGGTGAGCCAGCCGACGGCCTGGCGGATGGGACACGCGCTGCGTCTCATGGC
GGCGCGCGAGCACATGCTCGATGGCACGGTGGAGATCGACCATTTTTATCTCGGTGGGCGAGCAAGAATAAATCCGGACGATCCACCGCCTGGACGAGGC
CGAAAAGGTCTGCCGAATACCCAGAAGACGCCTGTCATGGTGATCGTTCAACGGCCAGATGACGTCACACCCGGCACTCCGGCCGGTGACGCGCGTGCTG
CGGTGGTGACTGGTCTTTCGCTCCGTGCAGCGGCGCGCGCCGCCGAAGCGCAGATCGACCCCGACGCCTATTTGATGAGCGATGAGGCGACAGCGTTCAT
AGCCCTTGGCGAGAACTATGCCAGGCATGACACCGTGAAGCATTCCAGCCGCGAATACGTTCGTAACGCCGTTCATGTCAATTCGGTCGAAGGTTTCAAT
GCCCGCGTCCGCCGCACAATTGCCGGTGTCTTTCATCATATCAGCCCGCAGCATGCCGACCTGTATTTCCACGAGATTGGCTTCCGCTGGTCACAGCGCA
TTGTTACGGGCCAGGCGGTGCGGAAAAGCCGAAACGGCAAGGAACGCATGAAAACCCTGTGGTCGCGGGTGCCGCCGGCGCTGCAATTGCTGCAAGTCTT
TCGCGTGGCTACCGGCCGCCAAATGCGCAGAAGCCCGGATGGTGGGATCATCGTCAAATCAGCAGTCGCTGTCTTTGGTTGATAAAGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1098 bp | 365 aa | 85 | 1182 | + | No |
Chemistry : DDE
ORF sequence :
MSETMLAALTNIRTAEDMIVAFRDEEQCRRLLESMVWPAGRVCPACGYKRSIAIAGRDMGKRRARPGLYQCSSGDCRFQFTVTTHTPLHSTKLPLSVWLK
GMWLMLQSDKGLSSVRLAEALGVSQPTAWRMGHALRLMAAREHMLDGTVEIDHFYLGGRARINPDDPPPGRGRKGLPNTQKTPVMVIVQRPDDVTPGTPA
GDARAAVVTGLSLRAAARAAEAQIDPDAYLMSDEATAFIALGENYARHDTVKHSSREYVRNAVHVNSVEGFNARVRRTIAGVFHHISPQHADLYFHEIGF
RWSQRIVTGQAVRKSRNGKERMKTLWSRVPPALQLLQVFRVATGRQMRRSPDGGIIVKSAVAVFG
GMWLMLQSDKGLSSVRLAEALGVSQPTAWRMGHALRLMAAREHMLDGTVEIDHFYLGGRARINPDDPPPGRGRKGLPNTQKTPVMVIVQRPDDVTPGTPA
GDARAAVVTGLSLRAAARAAEAQIDPDAYLMSDEATAFIALGENYARHDTVKHSSREYVRNAVHVNSVEGFNARVRRTIAGVFHHISPQHADLYFHEIGF
RWSQRIVTGQAVRKSRNGKERMKTLWSRVPPALQLLQVFRVATGRQMRRSPDGGIIVKSAVAVFG
Blast result :
Comments
ISRm32 is 54% aa similar to ISSpo8. There are two copies of ISRm32 in this plasmid and they may form a composite transposon TnSmeSM11b.
References
1] Stiens,M., Schneiker,S., Puhler,A. and Schluter,A. (2007) FEMS Microbiol. Lett. 271 (2), 297-309
2] ISfinder annotation
2] ISfinder annotation