ISRle3
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008382 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7 |
DNA section
IS Length : 2500 bp
Ends
IR Length : 14/15
IRL : GTAAGCGACAAGCTGACCCCATCTGGCGTCGGTAGCGTTGGCCGCTGTAT
IRR : GTAAGCGACAAGCCGGGGCCGTTCAGGCGGCGTAGTTCCATGGCATGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTCGCGGACAA | TTTGCAGG | GTCACGCCTCCG | 8 |
AGTCGCGGACAA | TTTGCAGG | GTCACGCCTCCG | 8 |
DNA sequence
GTAAGCGACAAGCTGACCCCATCTGGCGTCGGTAGCGTTGGCCGCTGTATTGCGGACAGACGATTCACAAACTGTGAGCTTCTATGTCTGCGCCTAGCTC
TGGAACTAGAAACTTCCATATGATTGAGGCTGTTCCGGAACGGCTTGAGGGCGCCCCACGGCAATTTCGGCGCCGCTGGTCCGATGATTTTAAAGCGCAG
GCTGTGGCTGAGGCAATGGAGCCCGGCGCAAGCGTCTCGGCCATTGCGCATCGCATCGGCATACATCCCTCGCAGCTATTTGGCTGGCGTCGTGATGCTC
GTGACGGACAACGATCCTTCTCGCAAGATCGGGCTGGTCAGACAGGGACCAGGACGATTGGCACACGTGCGATGATCGAGCTTGTGATCGGCGACGTCAT
TATCCGTGCCGACGCAGATATCGGCGAAGCACAGCTGCAGCGGGTGATCCGAGCGGTGCGGTCGGCATGATCCCGTCCGGCGTGAAGGTCTTTCTTGCGA
GCCATCCCATCGACTTCCGAAAGGGGCCGGACAGCTTGCTTTCGCTGGTACGGGATGCTGGCAGTGATCCGTTCAACGGTGCACTTTATGTCTTTCGGGC
CAAGAGAGCAGACCGAGTCAAGATCGTGTGGTGGGATGGCTCCGGCGTTTGCCTCTATGCGAAGCGGCTGGAAAAAGCCCAGTTCTGCTGGCCCCGGATC
GGCCATCATCGCGTCCAGCTCAATCATGCCCAGCTTCTGGCTTTGGTCGACGGAATGGACTGGAAGCGAGTTCGATCCGCGCCGGTGAAGCCTCCCGAGA
TTGTTGGGTAAAACCGCTGCGGCGAAGTGAATCAGGTCCCTGAAAGCATGGGCGGAGCGCGGCAAAATATGCTCTGATCATACCCATGACGCGGCCCGAG
ATTGAGCTCCCGGATGATGTAGAGGCTCTCAAAGCCATGGTTCTTGCCATGGCTGCAAAAGCAGCCCGCGTCGAGGCTTTGGAGAAACAGGTTGACGATC
TAGAGGCCCGCAACGCGGACGCCGATGAGCGCATCGAGCGGCTGACGCAGATCCTGAAGGCTTTCGATCGCGCCCGATTTGGCCGACGCTCGGAAAGGCT
TGCATCATCCACCGTCGATGACGAGCAGCATGCCTTTGTCTTCGAAGAGATCGAGACCGGCATTGCGACGATCAAGGCTCAGGTCACGAAAGGCCGCGGT
AGCGCGGACAGCAAACGCGCTCCGCGGCCACGCAAGGGCTTTGCGCCTCATCTTGAGCGCGTCGAGGTCGTGATCGAACCGGAAGAGCTTCCAGAACATG
CAGGTAAGACCAAGATCCTGATTGGCGAAGACGTCTCCGAGCGGCTGGATGTCGTGGCAGCGAAGTTCCGTGTCATCGTCACCCGCCGGCCGAAGTATGC
CTTTAGGAACGAGGATGGTGTCGTCCAGGCGGCGGCTCCGGCACACATCATCGAAGGTGGCATTCCCACGGAAGCACTTCTGGCCCAGATCGCCGTTTCC
AAATATGCCGACGGGCTGCCACTCTATCGCCAGGAAGCCATCTACGCACGCGACAAGGTCGAACTCGACCGCAAGCTAATGGCTCAATGGATGGGCAAGC
TGGGGTTCGAGCTCAATATCCTCGCCGACTACATCCTCGATGAGATCAAGAAGGCCGAACGGATCTTTGCCGACGAAACGACCTTGCCCACACTTGCTCC
TGGTTCCGGATCAGCGAAGACGGCATGGCTATGGGCGTATGCCAGGGATGACCGGACTTTTGGGGGCAGCGGTCCACCGATGGTAGCCTATCGCTTCGAG
GACAGTCGAGCCACCGAGTGTGTCGCACGACACCTGAACGGCTATCGTGGAATCCTGCAGGTCGATGGATATGCCGCTTATAACAAGCTCGTCCGGAAAG
ATGGAGGCAATAACAGCGCCATCCTGGCCGGCTGTTGGTCGCACAGCCGGAGAAAGTTCTACGAGTTGCATGTCGCAAAGAGCTCGAAAGTCGCTACCGA
CACCGTCGAGCGTATGGCGAGGTTATGGGAGATCGAGGAGCGTGTGCGCGGCCAAAGCCCTGAAGCTCGTGTCGCTGCACGCCAGGAGATCTCCGCAGCG
ATCGTCCGTGACCTCTTCACTCTCTGGCAGGCGACCCTGCCGCGGGTCTCTGGAAAATCCAAACTCGCCGAGGCTCTGCGTTATGCCATCTCGCGTCGAG
ACATCTTCGAGCGCTTCCTGACCGACGGCCGCATCGAACTCGACTCCAACATAGTCGAGCGAGCAATCAGACCCCAAGCGATCACGAGAAAAAATAGTCT
ATTCGCTGGAAGCGACGGTGGCGGCCGGACTTGGGCGACCATCGCGACGCTCCTGCAAACGGCAAAGATGAATGCCGTCGATCCGCAAGCCTGGTTGACC
CAGACGCTTGAGCGCCTTGCGAATGGATGGCCCAACAGTGAAATCGACGCCCTCATGCCATGGAACTACGCCGCCTGAACGGCCCCGGCTTGTCGCTTAC
TGGAACTAGAAACTTCCATATGATTGAGGCTGTTCCGGAACGGCTTGAGGGCGCCCCACGGCAATTTCGGCGCCGCTGGTCCGATGATTTTAAAGCGCAG
GCTGTGGCTGAGGCAATGGAGCCCGGCGCAAGCGTCTCGGCCATTGCGCATCGCATCGGCATACATCCCTCGCAGCTATTTGGCTGGCGTCGTGATGCTC
GTGACGGACAACGATCCTTCTCGCAAGATCGGGCTGGTCAGACAGGGACCAGGACGATTGGCACACGTGCGATGATCGAGCTTGTGATCGGCGACGTCAT
TATCCGTGCCGACGCAGATATCGGCGAAGCACAGCTGCAGCGGGTGATCCGAGCGGTGCGGTCGGCATGATCCCGTCCGGCGTGAAGGTCTTTCTTGCGA
GCCATCCCATCGACTTCCGAAAGGGGCCGGACAGCTTGCTTTCGCTGGTACGGGATGCTGGCAGTGATCCGTTCAACGGTGCACTTTATGTCTTTCGGGC
CAAGAGAGCAGACCGAGTCAAGATCGTGTGGTGGGATGGCTCCGGCGTTTGCCTCTATGCGAAGCGGCTGGAAAAAGCCCAGTTCTGCTGGCCCCGGATC
GGCCATCATCGCGTCCAGCTCAATCATGCCCAGCTTCTGGCTTTGGTCGACGGAATGGACTGGAAGCGAGTTCGATCCGCGCCGGTGAAGCCTCCCGAGA
TTGTTGGGTAAAACCGCTGCGGCGAAGTGAATCAGGTCCCTGAAAGCATGGGCGGAGCGCGGCAAAATATGCTCTGATCATACCCATGACGCGGCCCGAG
ATTGAGCTCCCGGATGATGTAGAGGCTCTCAAAGCCATGGTTCTTGCCATGGCTGCAAAAGCAGCCCGCGTCGAGGCTTTGGAGAAACAGGTTGACGATC
TAGAGGCCCGCAACGCGGACGCCGATGAGCGCATCGAGCGGCTGACGCAGATCCTGAAGGCTTTCGATCGCGCCCGATTTGGCCGACGCTCGGAAAGGCT
TGCATCATCCACCGTCGATGACGAGCAGCATGCCTTTGTCTTCGAAGAGATCGAGACCGGCATTGCGACGATCAAGGCTCAGGTCACGAAAGGCCGCGGT
AGCGCGGACAGCAAACGCGCTCCGCGGCCACGCAAGGGCTTTGCGCCTCATCTTGAGCGCGTCGAGGTCGTGATCGAACCGGAAGAGCTTCCAGAACATG
CAGGTAAGACCAAGATCCTGATTGGCGAAGACGTCTCCGAGCGGCTGGATGTCGTGGCAGCGAAGTTCCGTGTCATCGTCACCCGCCGGCCGAAGTATGC
CTTTAGGAACGAGGATGGTGTCGTCCAGGCGGCGGCTCCGGCACACATCATCGAAGGTGGCATTCCCACGGAAGCACTTCTGGCCCAGATCGCCGTTTCC
AAATATGCCGACGGGCTGCCACTCTATCGCCAGGAAGCCATCTACGCACGCGACAAGGTCGAACTCGACCGCAAGCTAATGGCTCAATGGATGGGCAAGC
TGGGGTTCGAGCTCAATATCCTCGCCGACTACATCCTCGATGAGATCAAGAAGGCCGAACGGATCTTTGCCGACGAAACGACCTTGCCCACACTTGCTCC
TGGTTCCGGATCAGCGAAGACGGCATGGCTATGGGCGTATGCCAGGGATGACCGGACTTTTGGGGGCAGCGGTCCACCGATGGTAGCCTATCGCTTCGAG
GACAGTCGAGCCACCGAGTGTGTCGCACGACACCTGAACGGCTATCGTGGAATCCTGCAGGTCGATGGATATGCCGCTTATAACAAGCTCGTCCGGAAAG
ATGGAGGCAATAACAGCGCCATCCTGGCCGGCTGTTGGTCGCACAGCCGGAGAAAGTTCTACGAGTTGCATGTCGCAAAGAGCTCGAAAGTCGCTACCGA
CACCGTCGAGCGTATGGCGAGGTTATGGGAGATCGAGGAGCGTGTGCGCGGCCAAAGCCCTGAAGCTCGTGTCGCTGCACGCCAGGAGATCTCCGCAGCG
ATCGTCCGTGACCTCTTCACTCTCTGGCAGGCGACCCTGCCGCGGGTCTCTGGAAAATCCAAACTCGCCGAGGCTCTGCGTTATGCCATCTCGCGTCGAG
ACATCTTCGAGCGCTTCCTGACCGACGGCCGCATCGAACTCGACTCCAACATAGTCGAGCGAGCAATCAGACCCCAAGCGATCACGAGAAAAAATAGTCT
ATTCGCTGGAAGCGACGGTGGCGGCCGGACTTGGGCGACCATCGCGACGCTCCTGCAAACGGCAAAGATGAATGCCGTCGATCCGCAAGCCTGGTTGACC
CAGACGCTTGAGCGCCTTGCGAATGGATGGCCCAACAGTGAAATCGACGCCCTCATGCCATGGAACTACGCCGCCTGAACGGCCCCGGCTTGTCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 84 | 470 | + | No |
AG : IS66 TnpA
ORF sequence :
MSAPSSGTRNFHMIEAVPERLEGAPRQFRRRWSDDFKAQAVAEAMEPGASVSAIAHRIGIHPSQLFGWRRDARDGQRSFSQDRAGQTGTRTIGTRAMIEL
VIGDVIIRADADIGEAQLQRVIRAVRSA
VIGDVIIRADADIGEAQLQRVIRAVRSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
345 bp | 114 aa | 467 | 811 | + | No |
AG : IS66 TnpB
ORF sequence :
MIPSGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGALYVFRAKRADRVKIVWWDGSGVCLYAKRLEKAQFCWPRIGHHRVQLNHAQLLALVDGMDWK
RVRSAPVKPPEIVG
RVRSAPVKPPEIVG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1593 bp | 530 aa | 886 | 2478 | + | No |
Chemistry : DDE
ORF sequence :
MTRPEIELPDDVEALKAMVLAMAAKAARVEALEKQVDDLEARNADADERIERLTQILKAFDRARFGRRSERLASSTVDDEQHAFVFEEIETGIATIKAQV
TKGRGSADSKRAPRPRKGFAPHLERVEVVIEPEELPEHAGKTKILIGEDVSERLDVVAAKFRVIVTRRPKYAFRNEDGVVQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGFELNILADYILDEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRTFGGSGPPMV
AYRFEDSRATECVARHLNGYRGILQVDGYAAYNKLVRKDGGNNSAILAGCWSHSRRKFYELHVAKSSKVATDTVERMARLWEIEERVRGQSPEARVAARQ
EISAAIVRDLFTLWQATLPRVSGKSKLAEALRYAISRRDIFERFLTDGRIELDSNIVERAIRPQAITRKNSLFAGSDGGGRTWATIATLLQTAKMNAVDP
QAWLTQTLERLANGWPNSEIDALMPWNYAA
TKGRGSADSKRAPRPRKGFAPHLERVEVVIEPEELPEHAGKTKILIGEDVSERLDVVAAKFRVIVTRRPKYAFRNEDGVVQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGFELNILADYILDEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRTFGGSGPPMV
AYRFEDSRATECVARHLNGYRGILQVDGYAAYNKLVRKDGGNNSAILAGCWSHSRRKFYELHVAKSSKVATDTVERMARLWEIEERVRGQSPEARVAARQ
EISAAIVRDLFTLWQATLPRVSGKSKLAEALRYAISRRDIFERFLTDGRIELDSNIVERAIRPQAITRKNSLFAGSDGGGRTWATIATLLQTAKMNAVDP
QAWLTQTLERLANGWPNSEIDALMPWNYAA
Blast result :
Comments
ISRle3 is 91%(ORF1), 84%(ORF2) and 93%(ORF3) aa similar to IS292.
References
1] Young,J.W., Crossman,L.C., Johnston,A.W.B., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R.J., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,A., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7, R4-R4