ISRj1
- Family IS630
- Group
Isoform Synonym(s) RSalpha, RSRj-alpha-9
Accession number | Transposition | Origin | Host |
---|---|---|---|
X02581 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA184 Bradyrhizobium japonicum USDA11 Bradyrhizobium japonicum IRATFA3 Bradyrhizobium japonicum Liquiprep Bradyrhizobium japonicum MSDJG1 Bradyrhizobium japonicum MSDJG8 Bradyrhizobium japonicum MSDJG49 Bradyrhizobium japonicum NPPL Bradyrhizobium japonicum USDA6 Bradyrhizobium japonicum USDA123 Bradyrhizobium japonicum USDA136 |
DNA section
IS Length : 1122 bp
Ends
IR Length : 6/8
IRL : GTACCCAGCTTTTCTTGGAACGTGAGTCGTGATTCAAGGTCGGGATGATA
IRR : GTCCCCGGAATCAGAGCTGAGTGATACGGCGACGGCCTTTGAAACGGCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNCGCTCGC | TA | GCCCCGTNNN | 2 |
NNNTTCTCGC | TA | GGGCCTGNNN | 2 |
NNNGAGGATG | TA | GTCCTGCNNN | 2 |
DNA sequence
GTACCCAGCTTTTCTTGGAACGTGAGTCGTGATTCAAGGTCGGGATGATACCCGAAGCAAGAGAAGTCCACCTTTCGAGGAAAGATCGCAAGGTGCTTGA
GGCGGTCTGTCGCTCACCGGTGACGTTGCAGCGCGATTTGAAGCGGGCGCGGATAGTTCTGTTGGCGGCGGATGGGCGCAGCACCCGGTCGATCGCCAAG
GAAGTTGGGGTCCAGCCGCGGATTGTCAGCCTTTGGCGGCATCGCTATGCCGACCATGGCCTTGAAGGGCTGCAAGACAAGCCGCGGCCTGGCAAGCAGC
CGATCTATACGAAGACGACCGACAAGCGGATTCTGAAGCTGCTGGATAAGCCGCCACCGCAAGGGTTTGCGCGCTGGACCGGCCCCCTGCTGGCCGAGGC
GCTGGGCGATGTCGATGTCCAATATGTCTGGCGGTTCCTGCGCAGCCACAAGATTGACCTGGTGGCTCGCAAGTCCTGGTGCGAGAGCAACGACCCGAAC
TTTACGGCCAAAGCCGCCGATGTTGTCGGCCTCTATGTCGCGCCGCCGGCGAAGGCCATTGTGCTGTGCGTGGACGAGAAGCCCTCGATCCAGGCTTTGG
AGCGAGCGCAGGGTTATCTGAAGTTGCCCAGTGGCCGCGCCTTAACCGGCCAAAGCCACGATTACAAGCGGCATGGCACCACAACATTGTTTGCGGCGCT
CGAAGTCGCCACCGGAAAGATCATCGCGACCCATTCAAAACGCCGGCGCCGCGTCGAGTTTCTCGATTTCATGAACAGCGTCACCGCGGCTTTTCCGAAC
CGCAAGCTTCACGTCATCCTCGACAACCTCAACACCCATAAAAAGAACGAGGACTGGCTCAAGGCCCACCCCAACGTGCAATTTCATTTCACGCCGACAA
GTGCGCCATGGCTCAATCAGGTCGAAGTATGGTTTTCCATCTTGCAGGGGCAGTCGCTCAGCGGCACCTCCTTCACGAGCCTCAAGCAGCTTCAGGAACA
CATCGATGCCTACGTCAACGCATACAACGACAGAGCCGAGCCCTTCGTCTGGACCAAGAAAAAGGTCCGTCAACGCCGTTTCAAAGGCCGTCGCCGTATC
ACTCAGCTCTGATTCCGGGGAC
GGCGGTCTGTCGCTCACCGGTGACGTTGCAGCGCGATTTGAAGCGGGCGCGGATAGTTCTGTTGGCGGCGGATGGGCGCAGCACCCGGTCGATCGCCAAG
GAAGTTGGGGTCCAGCCGCGGATTGTCAGCCTTTGGCGGCATCGCTATGCCGACCATGGCCTTGAAGGGCTGCAAGACAAGCCGCGGCCTGGCAAGCAGC
CGATCTATACGAAGACGACCGACAAGCGGATTCTGAAGCTGCTGGATAAGCCGCCACCGCAAGGGTTTGCGCGCTGGACCGGCCCCCTGCTGGCCGAGGC
GCTGGGCGATGTCGATGTCCAATATGTCTGGCGGTTCCTGCGCAGCCACAAGATTGACCTGGTGGCTCGCAAGTCCTGGTGCGAGAGCAACGACCCGAAC
TTTACGGCCAAAGCCGCCGATGTTGTCGGCCTCTATGTCGCGCCGCCGGCGAAGGCCATTGTGCTGTGCGTGGACGAGAAGCCCTCGATCCAGGCTTTGG
AGCGAGCGCAGGGTTATCTGAAGTTGCCCAGTGGCCGCGCCTTAACCGGCCAAAGCCACGATTACAAGCGGCATGGCACCACAACATTGTTTGCGGCGCT
CGAAGTCGCCACCGGAAAGATCATCGCGACCCATTCAAAACGCCGGCGCCGCGTCGAGTTTCTCGATTTCATGAACAGCGTCACCGCGGCTTTTCCGAAC
CGCAAGCTTCACGTCATCCTCGACAACCTCAACACCCATAAAAAGAACGAGGACTGGCTCAAGGCCCACCCCAACGTGCAATTTCATTTCACGCCGACAA
GTGCGCCATGGCTCAATCAGGTCGAAGTATGGTTTTCCATCTTGCAGGGGCAGTCGCTCAGCGGCACCTCCTTCACGAGCCTCAAGCAGCTTCAGGAACA
CATCGATGCCTACGTCAACGCATACAACGACAGAGCCGAGCCCTTCGTCTGGACCAAGAAAAAGGTCCGTCAACGCCGTTTCAAAGGCCGTCGCCGTATC
ACTCAGCTCTGATTCCGGGGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1068 bp | 355 aa | 45 | 1112 | + | No |
Chemistry : DDE
ORF sequence :
MIPEAREVHLSRKDRKVLEAVCRSPVTLQRDLKRARIVLLAADGRSTRSIAKEVGVQPRIVSLWRHRYADHGLEGLQDKPRPGKQPIYTKTTDKRILKLL
DKPPPQGFARWTGPLLAEALGDVDVQYVWRFLRSHKIDLVARKSWCESNDPNFTAKAADVVGLYVAPPAKAIVLCVDEKPSIQALERAQGYLKLPSGRAL
TGQSHDYKRHGTTTLFAALEVATGKIIATHSKRRRRVEFLDFMNSVTAAFPNRKLHVILDNLNTHKKNEDWLKAHPNVQFHFTPTSAPWLNQVEVWFSIL
QGQSLSGTSFTSLKQLQEHIDAYVNAYNDRAEPFVWTKKKVRQRRFKGRRRITQL
DKPPPQGFARWTGPLLAEALGDVDVQYVWRFLRSHKIDLVARKSWCESNDPNFTAKAADVVGLYVAPPAKAIVLCVDEKPSIQALERAQGYLKLPSGRAL
TGQSHDYKRHGTTTLFAALEVATGKIIATHSKRRRRVEFLDFMNSVTAAFPNRKLHVILDNLNTHKKNEDWLKAHPNVQFHFTPTSAPWLNQVEVWFSIL
QGQSLSGTSFTSLKQLQEHIDAYVNAYNDRAEPFVWTKKKVRQRRFKGRRRITQL
Blast result :
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References