ISRj1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) RSalpha, RSRj-alpha-9
Accession numberTranspositionOriginHost
X02581 ND Bradyrhizobium japonicum
Bradyrhizobium japonicum USDA184
Bradyrhizobium japonicum USDA11
Bradyrhizobium japonicum IRATFA3
Bradyrhizobium japonicum Liquiprep
Bradyrhizobium japonicum MSDJG1
Bradyrhizobium japonicum MSDJG8
Bradyrhizobium japonicum MSDJG49
Bradyrhizobium japonicum NPPL
Bradyrhizobium japonicum USDA6
Bradyrhizobium japonicum USDA123
Bradyrhizobium japonicum USDA136
DNA section
IS Length : 1122 bp

Ends


IR Length : 6/8

IRL : GTACCCAGCTTTTCTTGGAACGTGAGTCGTGATTCAAGGTCGGGATGATA
IRR : GTCCCCGGAATCAGAGCTGAGTGATACGGCGACGGCCTTTGAAACGGCGT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNCGCTCGCTAGCCCCGTNNN2
NNNTTCTCGCTAGGGCCTGNNN2
NNNGAGGATGTAGTCCTGCNNN2

DNA sequence

GTACCCAGCTTTTCTTGGAACGTGAGTCGTGATTCAAGGTCGGGATGATACCCGAAGCAAGAGAAGTCCACCTTTCGAGGAAAGATCGCAAGGTGCTTGA
GGCGGTCTGTCGCTCACCGGTGACGTTGCAGCGCGATTTGAAGCGGGCGCGGATAGTTCTGTTGGCGGCGGATGGGCGCAGCACCCGGTCGATCGCCAAG
GAAGTTGGGGTCCAGCCGCGGATTGTCAGCCTTTGGCGGCATCGCTATGCCGACCATGGCCTTGAAGGGCTGCAAGACAAGCCGCGGCCTGGCAAGCAGC
CGATCTATACGAAGACGACCGACAAGCGGATTCTGAAGCTGCTGGATAAGCCGCCACCGCAAGGGTTTGCGCGCTGGACCGGCCCCCTGCTGGCCGAGGC
GCTGGGCGATGTCGATGTCCAATATGTCTGGCGGTTCCTGCGCAGCCACAAGATTGACCTGGTGGCTCGCAAGTCCTGGTGCGAGAGCAACGACCCGAAC
TTTACGGCCAAAGCCGCCGATGTTGTCGGCCTCTATGTCGCGCCGCCGGCGAAGGCCATTGTGCTGTGCGTGGACGAGAAGCCCTCGATCCAGGCTTTGG
AGCGAGCGCAGGGTTATCTGAAGTTGCCCAGTGGCCGCGCCTTAACCGGCCAAAGCCACGATTACAAGCGGCATGGCACCACAACATTGTTTGCGGCGCT
CGAAGTCGCCACCGGAAAGATCATCGCGACCCATTCAAAACGCCGGCGCCGCGTCGAGTTTCTCGATTTCATGAACAGCGTCACCGCGGCTTTTCCGAAC
CGCAAGCTTCACGTCATCCTCGACAACCTCAACACCCATAAAAAGAACGAGGACTGGCTCAAGGCCCACCCCAACGTGCAATTTCATTTCACGCCGACAA
GTGCGCCATGGCTCAATCAGGTCGAAGTATGGTTTTCCATCTTGCAGGGGCAGTCGCTCAGCGGCACCTCCTTCACGAGCCTCAAGCAGCTTCAGGAACA
CATCGATGCCTACGTCAACGCATACAACGACAGAGCCGAGCCCTTCGTCTGGACCAAGAAAAAGGTCCGTCAACGCCGTTTCAAAGGCCGTCGCCGTATC
ACTCAGCTCTGATTCCGGGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1068 bp355 aa451112+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPEAREVHLSRKDRKVLEAVCRSPVTLQRDLKRARIVLLAADGRSTRSIAKEVGVQPRIVSLWRHRYADHGLEGLQDKPRPGKQPIYTKTTDKRILKLL
DKPPPQGFARWTGPLLAEALGDVDVQYVWRFLRSHKIDLVARKSWCESNDPNFTAKAADVVGLYVAPPAKAIVLCVDEKPSIQALERAQGYLKLPSGRAL
TGQSHDYKRHGTTTLFAALEVATGKIIATHSKRRRRVEFLDFMNSVTAAFPNRKLHVILDNLNTHKKNEDWLKAHPNVQFHFTPTSAPWLNQVEVWFSIL
QGQSLSGTSFTSLKQLQEHIDAYVNAYNDRAEPFVWTKKKVRQRRFKGRRRITQL

 

Blast result :
Comments
References