ISPst6
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas stutzeri | Pseudomonas stutzeri ATCC 17587 Pseudomonas stutzeri ATCC 17595 Pseudomonas stutzeri ATCC 14405 |
DNA section
IS Length : 1371 bp
Ends
IR Length : 12
IRL : ggctgtaATGGACTCTCCCTGCACCACGTTTCTTCTATAACTCCGTGGTG
IRR : ----tatATGGACTCTCCCCACAAGCAGTGAGGAATAGCTTTTTTCGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCTAACAAGTCG | CTCAAATCGCTCACTTCGTTCGCTGGGACCGGCTAAAGCCGGCCCCTTAG | 0 |
DNA sequence
GGCTGTAATGGACTCTCCCTGCACCACGTTTCTTCTATAACTCCGTGGTGACTGTTCGCTGGGAGAGGTGCGATGAAACGCATAGCGATTGATTTGGCCA
AGTCCGTTTACCAAGTTGCCGAGAGTGTCCAGGTCGGCCGAGTTGATCGGCGCAAGCGGCTCGATGCCGGGGCATTTACGCGATATGTACAGGAGCAGAT
CGAACCTGTCGAGTGGGTGATGGAAGCCTGTGGCACGGCTCACCATTGGGGCCGGTTGATGCAGGAAAAAGGCCATCGCGTCGTGCTCTTACACCCTCGA
TACGTGCGCCCGTATCGGCGGCGCAACAAGACCGATCGCAACGACTGCGACGCCATTCTGGAAGCAGCACGCTGCCAGGATATTCGCCCGGTGCCAGTCA
AAAGTGTGCAACAGCAGCAAGTCCAACAGCTGCATAAGTTGCGCGAGGGTTGGAAGAAGTCCCGCGTGCAACGCATCAACCTGTTGCGCGGCATCCTGCG
TGAGGCTGGGGTTGAAGCACCGAACGGCATCAAGCCATTTCTGCGCCAAGCGTGCGAACTGATCGAACGGCCCGAAGTGCGTGCACTGCGTGGGGCGCTG
CAAGTGGTACTGGCCGAGATCAACTTGTATGAACAGTCGATGCGCGAGTGCGAAGAACAACTGGCGCGCTGGCATGCGGACGATGAGATCGTGCACAAGC
TCGACGAAGTCAGCGGCATCGGCCTGCTGACTGCCAGTGCCTTGAAAACAGCCGTCGGCAAACCCGAGCGCTTCGCCAGTGGCCGGCACCTAAGCGCCTG
GCTGGGCATGACGCCCAGCGAATACAGCAGTGGCGAGCGGCGACGCCTAGGACGAATCAGCTGTAAGGGCAACGTCTACGTGCGCACCTTGCTGATTCAT
GGCGCACGAGCGGCGCTACTGGCAGCCAAGCGCTGCAAGGCGCGAACACCGGAGCGCCTGACCCAGTTGCAAAGTTGGGCGCTGCAAACCGCCGAACGCA
TCGGCCACAACAAGGCCGCGGTGGCGCTGGCAAACAAACTGGTGAGGATCTGCTGGGCGGTGTGGTGCCATGAACGACGGTTCAGCGGTAACTGGCACAG
CACAAAGCCCGCCTGACGGCGAGGTAAATAATGAGGTGAGTGTCTAGTGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGCGGAACA
AGGCCGATAACAATGATGATCTTCGTGATCGTTTGAACGCTTGGCCCCTGCTGCGCGAACTACAGAATGGCCAGGGCAATGCCCAGAACAGGCCGGATAT
ACGAATGCAACCGCGCTGACGACAGGATCGAAAAAAGCTATTCCTCACTGCTTGTGGGGAGAGTCCATATA
AGTCCGTTTACCAAGTTGCCGAGAGTGTCCAGGTCGGCCGAGTTGATCGGCGCAAGCGGCTCGATGCCGGGGCATTTACGCGATATGTACAGGAGCAGAT
CGAACCTGTCGAGTGGGTGATGGAAGCCTGTGGCACGGCTCACCATTGGGGCCGGTTGATGCAGGAAAAAGGCCATCGCGTCGTGCTCTTACACCCTCGA
TACGTGCGCCCGTATCGGCGGCGCAACAAGACCGATCGCAACGACTGCGACGCCATTCTGGAAGCAGCACGCTGCCAGGATATTCGCCCGGTGCCAGTCA
AAAGTGTGCAACAGCAGCAAGTCCAACAGCTGCATAAGTTGCGCGAGGGTTGGAAGAAGTCCCGCGTGCAACGCATCAACCTGTTGCGCGGCATCCTGCG
TGAGGCTGGGGTTGAAGCACCGAACGGCATCAAGCCATTTCTGCGCCAAGCGTGCGAACTGATCGAACGGCCCGAAGTGCGTGCACTGCGTGGGGCGCTG
CAAGTGGTACTGGCCGAGATCAACTTGTATGAACAGTCGATGCGCGAGTGCGAAGAACAACTGGCGCGCTGGCATGCGGACGATGAGATCGTGCACAAGC
TCGACGAAGTCAGCGGCATCGGCCTGCTGACTGCCAGTGCCTTGAAAACAGCCGTCGGCAAACCCGAGCGCTTCGCCAGTGGCCGGCACCTAAGCGCCTG
GCTGGGCATGACGCCCAGCGAATACAGCAGTGGCGAGCGGCGACGCCTAGGACGAATCAGCTGTAAGGGCAACGTCTACGTGCGCACCTTGCTGATTCAT
GGCGCACGAGCGGCGCTACTGGCAGCCAAGCGCTGCAAGGCGCGAACACCGGAGCGCCTGACCCAGTTGCAAAGTTGGGCGCTGCAAACCGCCGAACGCA
TCGGCCACAACAAGGCCGCGGTGGCGCTGGCAAACAAACTGGTGAGGATCTGCTGGGCGGTGTGGTGCCATGAACGACGGTTCAGCGGTAACTGGCACAG
CACAAAGCCCGCCTGACGGCGAGGTAAATAATGAGGTGAGTGTCTAGTGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGCGGAACA
AGGCCGATAACAATGATGATCTTCGTGATCGTTTGAACGCTTGGCCCCTGCTGCGCGAACTACAGAATGGCCAGGGCAATGCCCAGAACAGGCCGGATAT
ACGAATGCAACCGCGCTGACGACAGGATCGAAAAAAGCTATTCCTCACTGCTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 73 | 1116 | + | No |
Chemistry : DEDD
ORF sequence :
MKRIAIDLAKSVYQVAESVQVGRVDRRKRLDAGAFTRYVQEQIEPVEWVMEACGTAHHWGRLMQEKGHRVVLLHPRYVRPYRRRNKTDRNDCDAILEAAR
CQDIRPVPVKSVQQQQVQQLHKLREGWKKSRVQRINLLRGILREAGVEAPNGIKPFLRQACELIERPEVRALRGALQVVLAEINLYEQSMRECEEQLARW
HADDEIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPSEYSSGERRRLGRISCKGNVYVRTLLIHGARAALLAAKRCKARTPERLTQLQ
SWALQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGNWHSTKPA
CQDIRPVPVKSVQQQQVQQLHKLREGWKKSRVQRINLLRGILREAGVEAPNGIKPFLRQACELIERPEVRALRGALQVVLAEINLYEQSMRECEEQLARW
HADDEIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPSEYSSGERRRLGRISCKGNVYVRTLLIHGARAALLAAKRCKARTPERLTQLQ
SWALQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGNWHSTKPA
Blast result :
Comments
ISPst6 is 94% aa similar to ISPa21.
The IR of this IS are sub-terminal with 7nt separating the IRL from the left-hand and and 3nt separating the IRR from the right-hand end, a characteristic of members of the IS1111 group (Partridge and Hall, 2003). All known copies of ISPst6 have been found in the same orientation in a specific location within attC sites in Pseudomonas stutzeri, only one example of which is shown here. ISPst6 has been shown to exist in a circular form in which a promoter is formed at the junction, with a -10 region in the IRL and terminal sequences separated by 17bp from a -35 region located inside the right-hand end with one bp within IRR.
The IR of this IS are sub-terminal with 7nt separating the IRL from the left-hand and and 3nt separating the IRR from the right-hand end, a characteristic of members of the IS1111 group (Partridge and Hall, 2003). All known copies of ISPst6 have been found in the same orientation in a specific location within attC sites in Pseudomonas stutzeri, only one example of which is shown here. ISPst6 has been shown to exist in a circular form in which a promoter is formed at the junction, with a -10 region in the IRL and terminal sequences separated by 17bp from a -35 region located inside the right-hand end with one bp within IRR.
References
1] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Tetu, S. (2007) Direct submission.
2] Tetu, S. (2007) Direct submission.