ISPst2
- Family ISL3
- Group
Isoform Synonym(s) ISPs1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ012352 | ND | Pseudomonas stutzeri | Pseudomonas stutzeri OX1 Pseudomonas stutzeri M1 Pseudomonas stutzeri R1 Arthrobacter sp. ANT_H58 pA58H2 Arthrobacter sp. ANT_H40 pA40H1 |
DNA section
IS Length : 2984 bp
Ends
IR Length : 21/24
IRL : GGGTATCCGGAATTTCTGGTTGATAAAATGCCAAAGATGTAAAGAAGAAA
IRR : GGGTATACGGATTTAATGGTTGATGGGGCACCTTTACCCCACCAACCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCTTGAGGTTG | TTTTTAAA | CAAGTAGTCGTA | 8 |
AACCACCCAAAC | AAAAAAG | AAAGGAATCACC | 7 |
DNA sequence
GGGTATCCGGAATTTCTGGTTGATAAAATGCCAAAGATGTAAAGAAGAAAATCTTTCTCAGCGGATTATCTGATTGATCCTCTTCAGCCTACTCTACTGC
CAATTTTCTGTTTCCACCTTCGCCTGAGTCTTCATAGCGATGCTGACTAGGGAGGACAGCGAGAGCTGGGCAAGCGTCAAAGCGGTTTCTGGTTCATGCG
CAATCCGGACACCTGCACAACATTCCTCTTGTAAGAAACCGATCAAATTCTCTAGGTGCCCATACTCGGGTATACAGACAATCGTGCGGCTATGTTTCTC
CTGCCGGATCAGCCCTACCTTGGCCATGCGCGCAAGGTGATGTGATAGCGTCGAAGCAGGAATACCCAGCCCCTTCTGGATATCTCCGACCGAAGCCCCA
TCATGGCCAGCTTTGACCAGAAAGCGGAACACGGACAGTCGGTGACTATTCCCTAGCTCAGCTAAGCTGGCTGCAACCTTTTCGTGATCCATAGCACGCC
CCAATAATTCGATGTTTCTAGAATTATAGTTGACAGGTCGGATAAACGCAAGTAGCCTGCGTACATCATTTCGACAATACTAGAAATATAGGAGTAATAT
TGAATGTCATCTCAACTCCAAGACGCTCTAGGCATGTTCGCCTTTCTCGCTATCGAGCTATCGGTTTTATTCATTGGCATTAGCTTGCTGGTCGGAGTTC
TTCAACGTCACATCCCACCATCCAAGGTGGAAGCGTTACTGCCTTCCAGTGGGAAGCGAGGCTATTTTCTTGCTGCTGGTTTAGGAGCTATAACGCCTTC
TGTAGTTGCTCGACTATCCCCATGTTGAAAGGGTTGATTCGGGCACGGGCCGGTTTTGGGCCGATGATGGTGTTTCTTTTCTCATCTCCGTTGCTGAATC
CTATCGTCGTCGGGCTGCTGGTTGCCACGTTTGGATGGACACTTACTGCTAATCTATGTGCTCGCCGCTTTGGTGGTCGCGGTAGGTGCCGGATGGCTGC
TTCACACGCTTGGCTTCGAGCGTTTATTGTGCGCCGGACGGCGACACAAGAGAGCAGTGGATGTAGTTCATCAGAAGCCCGTGCAGTGCTACATCGACCG
CATCGAGTTGCGGCACCAACAGCTGCGACACCACTCCGAAGACGGCTTCTTGCGGGGCTGATAGGAAGACAACAGTCTCTACGTCTAGCGAATGCTGTGA
CAGTCAACCCACTGTCACGGTTAAGAAAGAAGGGAGTACAGTGGTGTGTGGCGGGAAGCTTGGTCGGACTTTATCGATGTGTTGCCTTACCTGCTCATCG
GTATTGCGATTGGCAGCGTGATCTATGGTTTCATGCCCACTGACTTATTGGAGCAGTATCAGGCCCAGATAACCCCTTTGCCATTCCAGTTGCCGCTGTC
ATCGGCCTGCCGTTGTATATCGCGCTGAAGCCGTCATACCTCTGGCAGCGGCTCTGATGGCCAAAGGCGTGGGTGCCGGGACGGTGCTAGCGTTTATCAC
GGCAGTGCCGGAGCCAGCCTGACTGAGCTCATTCTGTTGCGCTCTTTGTTCACGCTGAAGCTTTTAGCGGGCGTTTTTAGCAGTCATTTTTGCTATGGCG
ATGATTGCCGGTTACGCCACCTACCTGTTTTTCTGATCAAGGCGGGAGATGATTAATTCGTTAAGCCTTCCTGGGTACCAGTTGGTGGATTCTGATGAGC
AGAATGAAGACATACATTTTCGGCTTGAAGCACCTACACCAGTAGCCTGCGAGGGGTGCGGCGTGCAGGGTGAGTTCGTGCGGTTCGGCAAGCGTGACGT
TCCCTATCGTGATCTGCCCATCCACGGCAAGCGGGTCACTCTCTGGGTGGTCCGCCGCCGATACACTGCCGGGCCTGCAAGACAACATTCAGGGCCCCAG
CTACCGGAGATGGTGGACGGATTCCGTATGACACTGCCGCTGCATGAGTACGTGGAGAAGGAATCCTTCAACCACCCCTACACCTTTGTGGCGGCACAGA
CCGGCCTGGACGAGAAGACGGTGCGCGACATCTTCAACGCCCGCGCCGAGTTCCTGGGGCGCTGGCACCGCTTCGAGACGCCCCGCATCCTGGGCATTGA
CGAGCTATACCTGAACAAGCGCTACCGCTGCATTCTGACCAACATTGAGGAGCGAACCCTGCTCGACCTGCTGGCCACCCGCCGCCAGGACGTGGTGACC
AACTACCTGATGAAGCTGAAAGACCGGCAGAAGGTCGAGATCGTCAGCATGGACATGTGGAACCCCTACCGGGCAGCGGTCAAGGCTGTGCTGCCCCAGG
CCCGTATCGTGGTCGATAAGTTCCATGTGGTGCGCATGGCCAACGATGCCCTAGAGAGAGTGCGCAAGGGCCTCAGAAAGGAGCTGAAACCGTCCCAGAG
CCGGACTCTCAAGGGAGACCGGAAAATCCTGCTGAAACGCGCTCACGAAGTCTCAGACCGGGAGCGCCTCATCATGGAGACCTGGACAGGCGCGTTCCCG
CAACTGCTGGCCGCCTACGAGCACAAGGAGCGCTTCTACGGCATCTGGGACGCCACCACACGGCTCCAGGCAGAAGCCGCCCTGGACGAGTGGATAGCCA
CCATCCCGAAGGGCCAAAAGGAAGTCTGGAGCGATCTGGTCAGGGCAGTGGGAAACTGGCGCGAAGAGACCATGACCTACTTCGAGACGGACATGCCCGT
CACCAACGCTTACACGGAGTCCATCAACCGACTGGCCAAGGACAAGAACCGTGAAGGGCGCGGTTACTCCTTCGAGGTGATGCGGGCACGAATGCTCTAC
ACCACGAAGCACAAGAAGAAGGCACCGACTGCGAAGGTCTCTCCTTTCTACAAGAAAACCATCGGTTACGGACTGCCGGACTTCGCAGAGGAACTCAACT
ACGGAGTCGATCTATCAACCATCTGATAATGGTATCAGGTTGGTGGGGTAAAGGTGCCCCATCAACCATTAAATCCGTATACCC
CAATTTTCTGTTTCCACCTTCGCCTGAGTCTTCATAGCGATGCTGACTAGGGAGGACAGCGAGAGCTGGGCAAGCGTCAAAGCGGTTTCTGGTTCATGCG
CAATCCGGACACCTGCACAACATTCCTCTTGTAAGAAACCGATCAAATTCTCTAGGTGCCCATACTCGGGTATACAGACAATCGTGCGGCTATGTTTCTC
CTGCCGGATCAGCCCTACCTTGGCCATGCGCGCAAGGTGATGTGATAGCGTCGAAGCAGGAATACCCAGCCCCTTCTGGATATCTCCGACCGAAGCCCCA
TCATGGCCAGCTTTGACCAGAAAGCGGAACACGGACAGTCGGTGACTATTCCCTAGCTCAGCTAAGCTGGCTGCAACCTTTTCGTGATCCATAGCACGCC
CCAATAATTCGATGTTTCTAGAATTATAGTTGACAGGTCGGATAAACGCAAGTAGCCTGCGTACATCATTTCGACAATACTAGAAATATAGGAGTAATAT
TGAATGTCATCTCAACTCCAAGACGCTCTAGGCATGTTCGCCTTTCTCGCTATCGAGCTATCGGTTTTATTCATTGGCATTAGCTTGCTGGTCGGAGTTC
TTCAACGTCACATCCCACCATCCAAGGTGGAAGCGTTACTGCCTTCCAGTGGGAAGCGAGGCTATTTTCTTGCTGCTGGTTTAGGAGCTATAACGCCTTC
TGTAGTTGCTCGACTATCCCCATGTTGAAAGGGTTGATTCGGGCACGGGCCGGTTTTGGGCCGATGATGGTGTTTCTTTTCTCATCTCCGTTGCTGAATC
CTATCGTCGTCGGGCTGCTGGTTGCCACGTTTGGATGGACACTTACTGCTAATCTATGTGCTCGCCGCTTTGGTGGTCGCGGTAGGTGCCGGATGGCTGC
TTCACACGCTTGGCTTCGAGCGTTTATTGTGCGCCGGACGGCGACACAAGAGAGCAGTGGATGTAGTTCATCAGAAGCCCGTGCAGTGCTACATCGACCG
CATCGAGTTGCGGCACCAACAGCTGCGACACCACTCCGAAGACGGCTTCTTGCGGGGCTGATAGGAAGACAACAGTCTCTACGTCTAGCGAATGCTGTGA
CAGTCAACCCACTGTCACGGTTAAGAAAGAAGGGAGTACAGTGGTGTGTGGCGGGAAGCTTGGTCGGACTTTATCGATGTGTTGCCTTACCTGCTCATCG
GTATTGCGATTGGCAGCGTGATCTATGGTTTCATGCCCACTGACTTATTGGAGCAGTATCAGGCCCAGATAACCCCTTTGCCATTCCAGTTGCCGCTGTC
ATCGGCCTGCCGTTGTATATCGCGCTGAAGCCGTCATACCTCTGGCAGCGGCTCTGATGGCCAAAGGCGTGGGTGCCGGGACGGTGCTAGCGTTTATCAC
GGCAGTGCCGGAGCCAGCCTGACTGAGCTCATTCTGTTGCGCTCTTTGTTCACGCTGAAGCTTTTAGCGGGCGTTTTTAGCAGTCATTTTTGCTATGGCG
ATGATTGCCGGTTACGCCACCTACCTGTTTTTCTGATCAAGGCGGGAGATGATTAATTCGTTAAGCCTTCCTGGGTACCAGTTGGTGGATTCTGATGAGC
AGAATGAAGACATACATTTTCGGCTTGAAGCACCTACACCAGTAGCCTGCGAGGGGTGCGGCGTGCAGGGTGAGTTCGTGCGGTTCGGCAAGCGTGACGT
TCCCTATCGTGATCTGCCCATCCACGGCAAGCGGGTCACTCTCTGGGTGGTCCGCCGCCGATACACTGCCGGGCCTGCAAGACAACATTCAGGGCCCCAG
CTACCGGAGATGGTGGACGGATTCCGTATGACACTGCCGCTGCATGAGTACGTGGAGAAGGAATCCTTCAACCACCCCTACACCTTTGTGGCGGCACAGA
CCGGCCTGGACGAGAAGACGGTGCGCGACATCTTCAACGCCCGCGCCGAGTTCCTGGGGCGCTGGCACCGCTTCGAGACGCCCCGCATCCTGGGCATTGA
CGAGCTATACCTGAACAAGCGCTACCGCTGCATTCTGACCAACATTGAGGAGCGAACCCTGCTCGACCTGCTGGCCACCCGCCGCCAGGACGTGGTGACC
AACTACCTGATGAAGCTGAAAGACCGGCAGAAGGTCGAGATCGTCAGCATGGACATGTGGAACCCCTACCGGGCAGCGGTCAAGGCTGTGCTGCCCCAGG
CCCGTATCGTGGTCGATAAGTTCCATGTGGTGCGCATGGCCAACGATGCCCTAGAGAGAGTGCGCAAGGGCCTCAGAAAGGAGCTGAAACCGTCCCAGAG
CCGGACTCTCAAGGGAGACCGGAAAATCCTGCTGAAACGCGCTCACGAAGTCTCAGACCGGGAGCGCCTCATCATGGAGACCTGGACAGGCGCGTTCCCG
CAACTGCTGGCCGCCTACGAGCACAAGGAGCGCTTCTACGGCATCTGGGACGCCACCACACGGCTCCAGGCAGAAGCCGCCCTGGACGAGTGGATAGCCA
CCATCCCGAAGGGCCAAAAGGAAGTCTGGAGCGATCTGGTCAGGGCAGTGGGAAACTGGCGCGAAGAGACCATGACCTACTTCGAGACGGACATGCCCGT
CACCAACGCTTACACGGAGTCCATCAACCGACTGGCCAAGGACAAGAACCGTGAAGGGCGCGGTTACTCCTTCGAGGTGATGCGGGCACGAATGCTCTAC
ACCACGAAGCACAAGAAGAAGGCACCGACTGCGAAGGTCTCTCCTTTCTACAAGAAAACCATCGGTTACGGACTGCCGGACTTCGCAGAGGAACTCAACT
ACGGAGTCGATCTATCAACCATCTGATAATGGTATCAGGTTGGTGGGGTAAAGGTGCCCCATCAACCATTAAATCCGTATACCC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 492 | 94 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDHEKVAASLAELGNSHRLSVFRFLVKAGHDGASVGDIQKGLGIPASTLSHHLARMAKVGLIRQEKHSRTIVCIPEYGHLENLIGFLQEECCAGVRIAHE
PETALTLAQLSLSSLVSIAMKTQAKVETENWQ
PETALTLAQLSLSSLVSIAMKTQAKVETENWQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 425 aa | 1649 | 2926 | + | No |
Chemistry : Unknow
ORF sequence :
MINSLSLPGYQLVDSDEQNEDIHFRLEAPTPVACEGCGVQGEFVRFGKRDVPYRDLPIHGKRVTLWVVRRRYTAGPARQHSGPQLPEMVDGFRMTLPLHE
YVEKESFNHPYTFVAAQTGLDEKTVRDIFNARAEFLGRWHRFETPRILGIDELYLNKRYRCILTNIEERTLLDLLATRRQDVVTNYLMKLKDRQKVEIVS
MDMWNPYRAAVKAVLPQARIVVDKFHVVRMANDALERVRKGLRKELKPSQSRTLKGDRKILLKRAHEVSDRERLIMETWTGAFPQLLAAYEHKERFYGIW
DATTRLQAEAALDEWIATIPKGQKEVWSDLVRAVGNWREETMTYFETDMPVTNAYTESINRLAKDKNREGRGYSFEVMRARMLYTTKHKKKAPTAKVSPF
YKKTIGYGLPDFAEELNYGVDLSTI
YVEKESFNHPYTFVAAQTGLDEKTVRDIFNARAEFLGRWHRFETPRILGIDELYLNKRYRCILTNIEERTLLDLLATRRQDVVTNYLMKLKDRQKVEIVS
MDMWNPYRAAVKAVLPQARIVVDKFHVVRMANDALERVRKGLRKELKPSQSRTLKGDRKILLKRAHEVSDRERLIMETWTGAFPQLLAAYEHKERFYGIW
DATTRLQAEAALDEWIATIPKGQKEVWSDLVRAVGNWREETMTYFETDMPVTNAYTESINRLAKDKNREGRGYSFEVMRARMLYTTKHKKKAPTAKVSPF
YKKTIGYGLPDFAEELNYGVDLSTI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1035 bp | 344 aa | 603 | 1637 | + | No |
Annotation : PermeaseDescription :
ORF sequence :
MSSQLQDALGMFAFLAIELSVLFIGISLLVGVLQRHIPPSKVEALLTSSGKRGYFLAAGLGAITPFCSCSTIPMLKGLIRARAGFGPMMVFLFSSPLLNP
IVVGLLVATFGWTLTAIYVLAALVVAVGAGWLLHTLGFERYVRRTATQESSGCSSSASPCSATSTASSCGTNSCDTTPKTASCGADRKTTVSTSSECCDS
QPTVTVKKEGKYSGVWREAWSDFIDVLPYLLIGIAIGSVIYGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEVVIPLAAALMAKGVGAGTVLALII
GSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAGYATYLFF
IVVGLLVATFGWTLTAIYVLAALVVAVGAGWLLHTLGFERYVRRTATQESSGCSSSASPCSATSTASSCGTNSCDTTPKTASCGADRKTTVSTSSECCDS
QPTVTVKKEGKYSGVWREAWSDFIDVLPYLLIGIAIGSVIYGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEVVIPLAAALMAKGVGAGTVLALII
GSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAGYATYLFF
Blast result :
Comments
ORF2 was 93% similar to Serratia marcescens IS1396. Another possible ORF was found (ORF1 : nucleotides 94 to 492, reverse) and the product showed a certain degree of similarity to bacterial transcriptional regulators.
ISPst2 is present in several copies in the genomes of the three strains.
In the original article the sequence was named ISPs1, a number which had previously been designated to.
ISPst2 is present in several copies in the genomes of the three strains.
In the original article the sequence was named ISPs1, a number which had previously been designated to.
References
1] Bolognese,F., di Lecce,C., Galli,E. and Barbieri,PAppl. Environ. (1999) Microbiol. 65 (5), 1876-1882