ISPps1
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF 342828 | ND | Pseudomonas huttiensis | Pseudomonas huttiensis NRRLB-12228 Pseudomonas pseudoalcaligenes JS45 Acidovorax avenae |
DNA section
IS Length : 1863 bp
Ends
oriIS : GCCGCCTGCGCGCAAGTAAGTCCGCAGCCAAGCTACCCTGACAAGGCCCGAACTGGCGACGGTTCGGGCCTTGTGCTTTGCGTACCCAAACAATCGCCGC II struct. : No
terIS : TTGAGCGGCAAGCGAGCGCTCAACCTTCCTTGGCCGAACGTGTTTCGAGGCCCAAAACTCGTGCCATACTTGGCCTCATGCGGTTGAATTTCCTATCCGT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
GCCGCCTGCGCGCAAGTAAGTCCGCAGCCAAGCTACCCTGACAAGGCCCGAACTGGCGACGGTTCGGGCCTTGTGCTTTGCGTACCCAAACAATCGCCGC
AGAATACTGTGCATTTGTACAGCATTCATGTCAGCCACTTCCAAGCCCAAGCTCTACAACCCACGCCACCCCGAACGCACGCTGCTGTACCAAACGGTAG
CCGAGCACTACGAGACCTGGCTAGAGTTGGCCAGCGCGGGTCAGTTCGACGGCCAGGGCGACCACCACACCCCCAAGCCCTTCGTGCGCAAAGCGTTTGC
CAAGTATCTTGAGTGCGGCATCTTTGCCCATGGCTTTGCCCGCGCTCGCTGCGGCGACTGTGGGCACGACTACTTTGTAGCCTTCTCCTGCAAAGGCCGG
GGAGTCTGCCCCTCGTGCACCACCCGGCGCATGGTGGAGACAGCAGCGCACCTGAACGATCACGTATTCCCCCGCCTGCCGGTGCGCCAGTGGGTGCTCT
CCGTGCCCAAGAGGTTGCGGTACTTCATGCAACGCGACGGAGCGGTGCTGAGCATGGTGCTGCGCATCTTTCTGCGGGTGATCGCACAAACTCTGCAGAC
CCACAGCCCCGGTGCGGCCCATATGGACAAGGCAGGCCTGCACATCGGTGCCATCGCCTTCATTCACCGATTCGGCTCCAGCCTCAATGAACACGTCCAC
TTCCACGTTTGTGTGGTGGACGGGGTGTTTGAGGAAGTGGAGGGCGAGGGCGATGCTGATGCGACCCCTCGAATCTCATCGCCGGGTGTCATCTTTCACG
CGGCCACCGGCATCGATGCGGCTACCGTGGCCCCAGTGCAGACCACACTGCAAAAACGCATCCTGCGCGCCTTCGTTGCTCGGGGCCTGCTGGAGAACTG
TGACGCCAAAGACATGCTGGGCTACAAACACAGCGGCTTCTCGGTGGACGCCGGTGTCTGCATCGAAGCCCACGACCGCGCTGCGCTGGAGCGGCTGCTG
CGCTATTGCGCGCGTCCACCGTTTTCCATGGAGCGCCTACGCAAAGAGGGAAGCAAACTGGTGTACCGCTGTGCCAAACAGCGCAGCGAGCCCACCAGTG
ACAAGCGTGGTGCCAAGGCAGATGAGCTGCACCTCACACCGCTGGAACTGATCGACCGCATCGCCGCGCTGGTGCCACCGCCACGCACCCACCGGCACCG
CTACTTTGGTGTGCTGGCACCAAACTCGCCGCTGAGAGCGGCGGTAACGGCGCTGGCCCAGCCTGCTGCGTCGCAACCAGCCACGGTGGAGACTGCACAA
CCTGGCGCGGGCGTACCTGGGGTGGCGGCGCCGGGCAACGCGGCCACACCCACACCCGAACCTGAAGCACGCCCGAAGCGAGCGGCGCATTACTTGTGGG
CGGTGCTGATTGCCCGCATCTACGAGGCATTTCCGCTGCTGTGCCCCATGTGCGGTGGGCAGATGCGCATCATTGCCTTCATCACCCACAGCGCCGAAAT
CCGCCACATCCTGAACCACATCGGGGTGGAGTCTGCCCCCCCGCACATCACCCCGGCACGCGGGCCACCGCTGTGGGAGGGCTGCGACGCGCCGGTGGAT
GATGGTGCGCAAGGCGAGCCGGATTGGGATCTGGCAGCTCAACCCGACGAGGTAGACCAGCGCGTCAATTGGTGACCCAGTGAAGCGGCGGTATCCATCG
CTGCGGGGAAGCAGCTGCACGCGCGCCAGGCCCAAATGCATACTGCCTCCCAAGCTCTTGCCATTGAGCGGCAAGCGAGCGCTCAACCTTCCTTGGCCGA
ACGTGTTTCGAGGCCCAAAACTCGTGCCATACTTGGCCTCATGCGGTTGAATTTCCTATCCGT
AGAATACTGTGCATTTGTACAGCATTCATGTCAGCCACTTCCAAGCCCAAGCTCTACAACCCACGCCACCCCGAACGCACGCTGCTGTACCAAACGGTAG
CCGAGCACTACGAGACCTGGCTAGAGTTGGCCAGCGCGGGTCAGTTCGACGGCCAGGGCGACCACCACACCCCCAAGCCCTTCGTGCGCAAAGCGTTTGC
CAAGTATCTTGAGTGCGGCATCTTTGCCCATGGCTTTGCCCGCGCTCGCTGCGGCGACTGTGGGCACGACTACTTTGTAGCCTTCTCCTGCAAAGGCCGG
GGAGTCTGCCCCTCGTGCACCACCCGGCGCATGGTGGAGACAGCAGCGCACCTGAACGATCACGTATTCCCCCGCCTGCCGGTGCGCCAGTGGGTGCTCT
CCGTGCCCAAGAGGTTGCGGTACTTCATGCAACGCGACGGAGCGGTGCTGAGCATGGTGCTGCGCATCTTTCTGCGGGTGATCGCACAAACTCTGCAGAC
CCACAGCCCCGGTGCGGCCCATATGGACAAGGCAGGCCTGCACATCGGTGCCATCGCCTTCATTCACCGATTCGGCTCCAGCCTCAATGAACACGTCCAC
TTCCACGTTTGTGTGGTGGACGGGGTGTTTGAGGAAGTGGAGGGCGAGGGCGATGCTGATGCGACCCCTCGAATCTCATCGCCGGGTGTCATCTTTCACG
CGGCCACCGGCATCGATGCGGCTACCGTGGCCCCAGTGCAGACCACACTGCAAAAACGCATCCTGCGCGCCTTCGTTGCTCGGGGCCTGCTGGAGAACTG
TGACGCCAAAGACATGCTGGGCTACAAACACAGCGGCTTCTCGGTGGACGCCGGTGTCTGCATCGAAGCCCACGACCGCGCTGCGCTGGAGCGGCTGCTG
CGCTATTGCGCGCGTCCACCGTTTTCCATGGAGCGCCTACGCAAAGAGGGAAGCAAACTGGTGTACCGCTGTGCCAAACAGCGCAGCGAGCCCACCAGTG
ACAAGCGTGGTGCCAAGGCAGATGAGCTGCACCTCACACCGCTGGAACTGATCGACCGCATCGCCGCGCTGGTGCCACCGCCACGCACCCACCGGCACCG
CTACTTTGGTGTGCTGGCACCAAACTCGCCGCTGAGAGCGGCGGTAACGGCGCTGGCCCAGCCTGCTGCGTCGCAACCAGCCACGGTGGAGACTGCACAA
CCTGGCGCGGGCGTACCTGGGGTGGCGGCGCCGGGCAACGCGGCCACACCCACACCCGAACCTGAAGCACGCCCGAAGCGAGCGGCGCATTACTTGTGGG
CGGTGCTGATTGCCCGCATCTACGAGGCATTTCCGCTGCTGTGCCCCATGTGCGGTGGGCAGATGCGCATCATTGCCTTCATCACCCACAGCGCCGAAAT
CCGCCACATCCTGAACCACATCGGGGTGGAGTCTGCCCCCCCGCACATCACCCCGGCACGCGGGCCACCGCTGTGGGAGGGCTGCGACGCGCCGGTGGAT
GATGGTGCGCAAGGCGAGCCGGATTGGGATCTGGCAGCTCAACCCGACGAGGTAGACCAGCGCGTCAATTGGTGACCCAGTGAAGCGGCGGTATCCATCG
CTGCGGGGAAGCAGCTGCACGCGCGCCAGGCCCAAATGCATACTGCCTCCCAAGCTCTTGCCATTGAGCGGCAAGCGAGCGCTCAACCTTCCTTGGCCGA
ACGTGTTTCGAGGCCCAAAACTCGTGCCATACTTGGCCTCATGCGGTTGAATTTCCTATCCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1548 bp | 515 aa | 124 | 1671 | + | No |
Chemistry : Y2
ORF sequence :
MSATSKPKLYNPRHPERTLLYQTVAEHYETWLELASAGQFDGQGDHHTPKPFVRKAFAKYLECGIFAHGFARARCGDCGHDYFVAFSCKGRGVCPSCTTR
RMVETAAHLNDHVFPRLPVRQWVLSVPKRLRYFMQRDGAVLSMVLRIFLRVIAQTLQTHSPGAAHMDKAGLHIGAIAFIHRFGSSLNEHVHFHVCVVDGV
FEEVEGEGDADATPRISSPGVIFHAATGIDAATVAPVQTTLQKRILRAFVARGLLENCDAKDMLGYKHSGFSVDAGVCIEAHDRAALERLLRYCARPPFS
MERLRKEGSKLVYRCAKQRSEPTSDKRGAKADELHLTPLELIDRIAALVPPPRTHRHRYFGVLAPNSPLRAAVTALAQPAASQPATVETAQPGAGVPGVA
APGNAATPTPEPEARPKRAAHYLWAVLIARIYEAFPLLCPMCGGQMRIIAFITHSAEIRHILNHIGVESAPPHITPARGPPLWEGCDAPVDDGAQGEPDW
DLAAQPDEVDQRVNW
RMVETAAHLNDHVFPRLPVRQWVLSVPKRLRYFMQRDGAVLSMVLRIFLRVIAQTLQTHSPGAAHMDKAGLHIGAIAFIHRFGSSLNEHVHFHVCVVDGV
FEEVEGEGDADATPRISSPGVIFHAATGIDAATVAPVQTTLQKRILRAFVARGLLENCDAKDMLGYKHSGFSVDAGVCIEAHDRAALERLLRYCARPPFS
MERLRKEGSKLVYRCAKQRSEPTSDKRGAKADELHLTPLELIDRIAALVPPPRTHRHRYFGVLAPNSPLRAAVTALAQPAASQPATVETAQPGAGVPGVA
APGNAATPTPEPEARPKRAAHYLWAVLIARIYEAFPLLCPMCGGQMRIIAFITHSAEIRHILNHIGVESAPPHITPARGPPLWEGCDAPVDDGAQGEPDW
DLAAQPDEVDQRVNW
Blast result :
Comments
ISPps1 is 35% aa similar to IS1294.
This IS is also present in Pseudomonas pseudoalcaligenes ( Accession number : AF028594 )JS45 and Acidovorax avenae NRRLB-12227 ( Accession number : AF086815 ).
This IS is also present in Pseudomonas pseudoalcaligenes ( Accession number : AF028594 )JS45 and Acidovorax avenae NRRLB-12227 ( Accession number : AF086815 ).
References
1] Eaton, R.W. (2001) Direct submission GenBank