ISPna2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AANM01000013 | ND | Polaromonas naphthalenivorans | Polaromonas naphthalenivorans CJ2 |
DNA section
IS Length : 1049 bp
Ends
IR Length : 32/37
IRL : GGCTCTGTCACTGTTAAATGTGGAAATTTTTCAGAGGCGTAGAGTTCATA
IRR : GGCTATGTCACTGTTAAATGTGGAAATCTTCCCAGGGCCATCGCCAAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGCCGATGCT | TTTCAAAT | AGGTCTCGACCAC | 8 |
DNA sequence
GGCTCTGTCACTGTTAAATGTGGAAATTTTTCAGAGGCGTAGAGTTCATAGCGAACCCTGAAGGAGGTAGCCATGAACGCCCAGACTTTCAATGCGTTGA
TGAACCAACAGGTGCCCCGGCTCACGCTGCGCCAGCGTGAGTTGCTCAAGAAGCGTCTGGATGAACTCGATGAGCAGCAAAAAGGGCTGGCCGTCATTGA
GTCGTCCAGCGCGACTGAGCCGCGCTGCTGCCCACACTGCCAAGGCACCGAGCTTTACCGGCATGGCCACGTCAGTGGGTTACAGCGCTACCGCTGTCGG
ACATGCCGCCGCACGTTCAATGCCCTGACGGGCACCGCGCTGGCGCGGCTGCGCAAGAAGGGCAAGTGGTTCGGTTTTAGTGAAGCCCTGGCCGCGTCCC
TCACCCTTCGCCGGGCCGCCACTGCCCTGCAGGTTCACCGAAACACTGCGCTGCGCTGGCGACACCGATTCCTGCGAGGCCTCAAGGCAGAGCGAGCCGC
TACGCTGCGGGGCATCACCGAGGCCGACGAGACCTATTTCCTGGAGTCGTGCAAGGGTTGCCGCAAGCTGCAGCGTCCCGCGCGCCGGAGCGGCAGCAAG
GCCCGCAGCGCCGGTCTGTCAAACGAACTGGTGTGCGTTTTGGTGGCTCGGGACCGTGCCGGACAGACGCTGGACTGGGTGATGGGACGCGGGCAGATGA
CAAAAGCCGCGCTGGCCGGCGCACTGCAGCCCGTGCTGGCCAAGGATGCGCTGCTGGTGAGCGATGGCAACCGGACCTACTGCGGCTTTGCGCAGGACGC
GCACCTCGCGCACGAGGCGGTCAATCTGAACGCGGGCGTGCGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGTCTCAAACAG
TGGCTGCACCGCTTTCACGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCTTGGACAACCACCATGGCGACTCTGGGCAAGCTG
TCTTGGCGATGGCCCTGGGAAGATTTCCACATTTAACAGTGACATAGCC
TGAACCAACAGGTGCCCCGGCTCACGCTGCGCCAGCGTGAGTTGCTCAAGAAGCGTCTGGATGAACTCGATGAGCAGCAAAAAGGGCTGGCCGTCATTGA
GTCGTCCAGCGCGACTGAGCCGCGCTGCTGCCCACACTGCCAAGGCACCGAGCTTTACCGGCATGGCCACGTCAGTGGGTTACAGCGCTACCGCTGTCGG
ACATGCCGCCGCACGTTCAATGCCCTGACGGGCACCGCGCTGGCGCGGCTGCGCAAGAAGGGCAAGTGGTTCGGTTTTAGTGAAGCCCTGGCCGCGTCCC
TCACCCTTCGCCGGGCCGCCACTGCCCTGCAGGTTCACCGAAACACTGCGCTGCGCTGGCGACACCGATTCCTGCGAGGCCTCAAGGCAGAGCGAGCCGC
TACGCTGCGGGGCATCACCGAGGCCGACGAGACCTATTTCCTGGAGTCGTGCAAGGGTTGCCGCAAGCTGCAGCGTCCCGCGCGCCGGAGCGGCAGCAAG
GCCCGCAGCGCCGGTCTGTCAAACGAACTGGTGTGCGTTTTGGTGGCTCGGGACCGTGCCGGACAGACGCTGGACTGGGTGATGGGACGCGGGCAGATGA
CAAAAGCCGCGCTGGCCGGCGCACTGCAGCCCGTGCTGGCCAAGGATGCGCTGCTGGTGAGCGATGGCAACCGGACCTACTGCGGCTTTGCGCAGGACGC
GCACCTCGCGCACGAGGCGGTCAATCTGAACGCGGGCGTGCGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGTCTCAAACAG
TGGCTGCACCGCTTTCACGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCTTGGACAACCACCATGGCGACTCTGGGCAAGCTG
TCTTGGCGATGGCCCTGGGAAGATTTCCACATTTAACAGTGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 73 | 1047 | + | No |
Chemistry : DDE
ORF sequence :
MNAQTFNALMNQQVPRLTLRQRELLKKRLDELDEQQKGLAVIESSSATEPRCCPHCQGTELYRHGHVSGLQRYRCRTCRRTFNALTGTALARLRKKGKWF
GFSEALAASLTLRRAATALQVHRNTALRWRHRFLRGLKAERAATLRGITEADETYFLESCKGCRKLQRPARRSGSKARSAGLSNELVCVLVARDRAGQTL
DWVMGRGQMTKAALAGALQPVLAKDALLVSDGNRTYCGFAQDAHLAHEAVNLNAGVRVNGAIHVQNVNAYHGRLKQWLHRFHGVATGYLDNYLGWFRALD
NHHGDSGQAVLAMALGRFPHLTVT
GFSEALAASLTLRRAATALQVHRNTALRWRHRFLRGLKAERAATLRGITEADETYFLESCKGCRKLQRPARRSGSKARSAGLSNELVCVLVARDRAGQTL
DWVMGRGQMTKAALAGALQPVLAKDALLVSDGNRTYCGFAQDAHLAHEAVNLNAGVRVNGAIHVQNVNAYHGRLKQWLHRFHGVATGYLDNYLGWFRALD
NHHGDSGQAVLAMALGRFPHLTVT
Blast result :
Comments
ISPna2 is 60% aa similar to ISNe7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2006) Direct submission Genbank