ISPna2

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AANM01000013 ND Polaromonas naphthalenivorans
Polaromonas naphthalenivorans CJ2
DNA section
IS Length : 1049 bp

Ends


IR Length : 32/37

IRL : GGCTCTGTCACTGTTAAATGTGGAAATTTTTCAGAGGCGTAGAGTTCATA
IRR : GGCTATGTCACTGTTAAATGTGGAAATCTTCCCAGGGCCATCGCCAAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGCCGATGCTTTTCAAATAGGTCTCGACCAC8

DNA sequence

GGCTCTGTCACTGTTAAATGTGGAAATTTTTCAGAGGCGTAGAGTTCATAGCGAACCCTGAAGGAGGTAGCCATGAACGCCCAGACTTTCAATGCGTTGA
TGAACCAACAGGTGCCCCGGCTCACGCTGCGCCAGCGTGAGTTGCTCAAGAAGCGTCTGGATGAACTCGATGAGCAGCAAAAAGGGCTGGCCGTCATTGA
GTCGTCCAGCGCGACTGAGCCGCGCTGCTGCCCACACTGCCAAGGCACCGAGCTTTACCGGCATGGCCACGTCAGTGGGTTACAGCGCTACCGCTGTCGG
ACATGCCGCCGCACGTTCAATGCCCTGACGGGCACCGCGCTGGCGCGGCTGCGCAAGAAGGGCAAGTGGTTCGGTTTTAGTGAAGCCCTGGCCGCGTCCC
TCACCCTTCGCCGGGCCGCCACTGCCCTGCAGGTTCACCGAAACACTGCGCTGCGCTGGCGACACCGATTCCTGCGAGGCCTCAAGGCAGAGCGAGCCGC
TACGCTGCGGGGCATCACCGAGGCCGACGAGACCTATTTCCTGGAGTCGTGCAAGGGTTGCCGCAAGCTGCAGCGTCCCGCGCGCCGGAGCGGCAGCAAG
GCCCGCAGCGCCGGTCTGTCAAACGAACTGGTGTGCGTTTTGGTGGCTCGGGACCGTGCCGGACAGACGCTGGACTGGGTGATGGGACGCGGGCAGATGA
CAAAAGCCGCGCTGGCCGGCGCACTGCAGCCCGTGCTGGCCAAGGATGCGCTGCTGGTGAGCGATGGCAACCGGACCTACTGCGGCTTTGCGCAGGACGC
GCACCTCGCGCACGAGGCGGTCAATCTGAACGCGGGCGTGCGCGTCAACGGCGCCATCCATGTCCAGAACGTCAACGCCTATCACGGCCGTCTCAAACAG
TGGCTGCACCGCTTTCACGGCGTTGCCACGGGTTATCTGGACAACTACCTGGGCTGGTTTCGCGCCTTGGACAACCACCATGGCGACTCTGGGCAAGCTG
TCTTGGCGATGGCCCTGGGAAGATTTCCACATTTAACAGTGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa731047+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNAQTFNALMNQQVPRLTLRQRELLKKRLDELDEQQKGLAVIESSSATEPRCCPHCQGTELYRHGHVSGLQRYRCRTCRRTFNALTGTALARLRKKGKWF
GFSEALAASLTLRRAATALQVHRNTALRWRHRFLRGLKAERAATLRGITEADETYFLESCKGCRKLQRPARRSGSKARSAGLSNELVCVLVARDRAGQTL
DWVMGRGQMTKAALAGALQPVLAKDALLVSDGNRTYCGFAQDAHLAHEAVNLNAGVRVNGAIHVQNVNAYHGRLKQWLHRFHGVATGYLDNYLGWFRALD
NHHGDSGQAVLAMALGRFPHLTVT

 

Blast result :
Comments
ISPna2 is 60% aa similar to ISNe7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2006) Direct submission Genbank