ISPlu4
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005126 | ND | Photorhabdus luminescens | Photorhabdus luminescens subsp. laumondii TTO1 |
DNA section
IS Length : 1760 bp
Ends
IR Length : 14/16
IRL : CATTCCGCACCGTATTTCTGATTTAAAAATAATGTGATCTTACACAGGTT
IRR : CATTCCGCACCTAATTCAGGAATAAACCGCTTTATATTGTGCACCTAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CATTCCGCACCGTATTTCTGATTTAAAAATAATGTGATCTTACACAGGTTTTTTGTATTGATGACATCGGTGGGGTTGACGGTAATCGCCAATTTTGATC
TATTACTTTTATTTGCCGGAAAGCGAATATGTCCACACCTATACCTGCCATTAAACGTCTCGATCATCTTGGCCTTATCGCCGCTTTTTGTCATGAAGCC
GGTTTACCCCGCATGATTGATGCCATTATCCCAAAATATTCATCGCATACCGTCTCTCACGGCGACGCTTTTCTGGCGATGATCCTTAACGGGCTGGGGT
TTCACAGCCGGACATTGCACATGTTTTCCGGCTTTTTTCAACATAAGCCGATTGCGCGTTTAATTGGCGCTGACATTGAAGCTGAACACCTTAATGATGA
TGTGCTCGGCCGAACACTGGATGCCTTATATGAAGCGGGGGTGTCGGAAGTTTATCAGGTGCTTGCTGAGCAAGTAGTTGATAAATTAGGGTTAAATCCC
GATTCCGTTCATTTGGATATCACGAGTTTTCATGTCGATGGTGACTATGACAGCGCGTTGGGAGATGACACAAAACGCATTGCACTGGTGCCGGGTTATA
GCCGGGATCACCGGCCTGAACTGAACCAGGTTGTCCTTGAACTGATTTGCGAAAATCAGGCAGGTATCCCTGTCTATATGCAGGCTATGAGCGGGAATAC
GAATGATGCCAAAGCCTTTGCCCAGACGATCAAAACCCATATTCAATGCCTGAAAGCAGCACAAAACAGCCGCTACTTTGTGGCCGATGCCGCCCTTTAT
ACTGAAGCCGCGATCGCTTCGCTTCATCAGCAAAAACAACGATTTATTACGCGTGTTCCCCTGACGATCAAGGAAGCTAAACAGTCTCTCCTGAACGTGA
CAGCGGAGCAATTCAGCCCCATCAGTGAGGGCTATTCAGGCTGCTGGGTGACGTCATCATATGGCGGCGTTCCTCAGCGTTGGTTACTGGTGAACAGTAC
GGCGGCAGAAAAACGTGAAAACCAGACTTTCCGGAAAAACACACTCAGGGAAACAGAAAACGAGTCTAAACAGTTCGACAAACTGGGCAAAAAGCCCTTT
GCCTGCCGGGAGGATGCCTTACAGGCACTGCATGATTTTGAGTCTCAATGCCAGTTTATCGGCATCGCCTCGCCGGAAATTCAGGCGATTACCGCGTATG
CGGGGCGCGGGAAACCCGGCAAGCATCAACCCCCCAAATCGGTTCATTATCAATTAGCCGGTCAGGCTTATACCCGGTTAGACAAGGTGAAGCAGGCCAG
ATTGCGGGTCGGGAGGTTTATTTTAGCGACCAATGAACGGGATGAAGGACGGCTTGATATGGCGGCGTTACTGGCTAATTATAAGGCACAACAAAAGGTG
GAGCGGGGTTTTCGCTTCCTGAAAAGTCCGGAATTCCTGACGTCTGCCATTTTCCTGAAAAAACCGGAGCGGATAGAAGCGCTGTTAATGGTGATGACAT
GTTGTCTCATGGTTTATGCGGCGCTGGAACATAAAATTCGCCATGAATTGAAACAAAATGTGCCGTTTTTCCCCGATATGAAGAACAAACCGACACAATC
CCCCACCGCGCGTTGGGTATTTCTGGCCTTTGAAGGGATCAGCACCTTTGAATTTCAAGAACATAAAATGGTGACAGGAATGCAATCTTACCACCATGAG
CTTTTGAGTTTATTAGGTGCACAATATAAAGCGGTTTATTCCTGAATTAGGTGCGGAATG
TATTACTTTTATTTGCCGGAAAGCGAATATGTCCACACCTATACCTGCCATTAAACGTCTCGATCATCTTGGCCTTATCGCCGCTTTTTGTCATGAAGCC
GGTTTACCCCGCATGATTGATGCCATTATCCCAAAATATTCATCGCATACCGTCTCTCACGGCGACGCTTTTCTGGCGATGATCCTTAACGGGCTGGGGT
TTCACAGCCGGACATTGCACATGTTTTCCGGCTTTTTTCAACATAAGCCGATTGCGCGTTTAATTGGCGCTGACATTGAAGCTGAACACCTTAATGATGA
TGTGCTCGGCCGAACACTGGATGCCTTATATGAAGCGGGGGTGTCGGAAGTTTATCAGGTGCTTGCTGAGCAAGTAGTTGATAAATTAGGGTTAAATCCC
GATTCCGTTCATTTGGATATCACGAGTTTTCATGTCGATGGTGACTATGACAGCGCGTTGGGAGATGACACAAAACGCATTGCACTGGTGCCGGGTTATA
GCCGGGATCACCGGCCTGAACTGAACCAGGTTGTCCTTGAACTGATTTGCGAAAATCAGGCAGGTATCCCTGTCTATATGCAGGCTATGAGCGGGAATAC
GAATGATGCCAAAGCCTTTGCCCAGACGATCAAAACCCATATTCAATGCCTGAAAGCAGCACAAAACAGCCGCTACTTTGTGGCCGATGCCGCCCTTTAT
ACTGAAGCCGCGATCGCTTCGCTTCATCAGCAAAAACAACGATTTATTACGCGTGTTCCCCTGACGATCAAGGAAGCTAAACAGTCTCTCCTGAACGTGA
CAGCGGAGCAATTCAGCCCCATCAGTGAGGGCTATTCAGGCTGCTGGGTGACGTCATCATATGGCGGCGTTCCTCAGCGTTGGTTACTGGTGAACAGTAC
GGCGGCAGAAAAACGTGAAAACCAGACTTTCCGGAAAAACACACTCAGGGAAACAGAAAACGAGTCTAAACAGTTCGACAAACTGGGCAAAAAGCCCTTT
GCCTGCCGGGAGGATGCCTTACAGGCACTGCATGATTTTGAGTCTCAATGCCAGTTTATCGGCATCGCCTCGCCGGAAATTCAGGCGATTACCGCGTATG
CGGGGCGCGGGAAACCCGGCAAGCATCAACCCCCCAAATCGGTTCATTATCAATTAGCCGGTCAGGCTTATACCCGGTTAGACAAGGTGAAGCAGGCCAG
ATTGCGGGTCGGGAGGTTTATTTTAGCGACCAATGAACGGGATGAAGGACGGCTTGATATGGCGGCGTTACTGGCTAATTATAAGGCACAACAAAAGGTG
GAGCGGGGTTTTCGCTTCCTGAAAAGTCCGGAATTCCTGACGTCTGCCATTTTCCTGAAAAAACCGGAGCGGATAGAAGCGCTGTTAATGGTGATGACAT
GTTGTCTCATGGTTTATGCGGCGCTGGAACATAAAATTCGCCATGAATTGAAACAAAATGTGCCGTTTTTCCCCGATATGAAGAACAAACCGACACAATC
CCCCACCGCGCGTTGGGTATTTCTGGCCTTTGAAGGGATCAGCACCTTTGAATTTCAAGAACATAAAATGGTGACAGGAATGCAATCTTACCACCATGAG
CTTTTGAGTTTATTAGGTGCACAATATAAAGCGGTTTATTCCTGAATTAGGTGCGGAATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1617 bp | 538 aa | 129 | 1745 | + | No |
Chemistry : DDE
ORF sequence :
MSTPIPAIKRLDHLGLIAAFCHEAGLPRMIDAIIPKYSSHTVSHGDAFLAMILNGLGFHSRTLHMFSGFFQHKPIARLIGADIEAEHLNDDVLGRTLDAL
YEAGVSEVYQVLAEQVVDKLGLNPDSVHLDITSFHVDGDYDSALGDDTKRIALVPGYSRDHRPELNQVVLELICENQAGIPVYMQAMSGNTNDAKAFAQT
IKTHIQCLKAAQNSRYFVADAALYTEAAIASLHQQKQRFITRVPLTIKEAKQSLLNVTAEQFSPISEGYSGCWVTSSYGGVPQRWLLVNSTAAEKRENQT
FRKNTLRETENESKQFDKLGKKPFACREDALQALHDFESQCQFIGIASPEIQAITAYAGRGKPGKHQPPKSVHYQLAGQAYTRLDKVKQARLRVGRFILA
TNERDEGRLDMAALLANYKAQQKVERGFRFLKSPEFLTSAIFLKKPERIEALLMVMTCCLMVYAALEHKIRHELKQNVPFFPDMKNKPTQSPTARWVFLA
FEGISTFEFQEHKMVTGMQSYHHELLSLLGAQYKAVYS
YEAGVSEVYQVLAEQVVDKLGLNPDSVHLDITSFHVDGDYDSALGDDTKRIALVPGYSRDHRPELNQVVLELICENQAGIPVYMQAMSGNTNDAKAFAQT
IKTHIQCLKAAQNSRYFVADAALYTEAAIASLHQQKQRFITRVPLTIKEAKQSLLNVTAEQFSPISEGYSGCWVTSSYGGVPQRWLLVNSTAAEKRENQT
FRKNTLRETENESKQFDKLGKKPFACREDALQALHDFESQCQFIGIASPEIQAITAYAGRGKPGKHQPPKSVHYQLAGQAYTRLDKVKQARLRVGRFILA
TNERDEGRLDMAALLANYKAQQKVERGFRFLKSPEFLTSAIFLKKPERIEALLMVMTCCLMVYAALEHKIRHELKQNVPFFPDMKNKPTQSPTARWVFLA
FEGISTFEFQEHKMVTGMQSYHHELLSLLGAQYKAVYS
Blast result :
Comments
ISPlu4 is 39% aa similar to IS1634.
There are 7 complete copies and one partial copy in the genome.
There are 7 complete copies and one partial copy in the genome.
References
1] Duchaud,E., Rusniok,C., Frangeul,L., Buchrieser,C., Taourit,S., Bocs,S., Boursaux-Eude,C., Chandler,M., Dassa,E., Derose,R.,Derzelle,S., Freyssinet,G., Gaudriault,S., Givaudan,A., Glaser,P.,Medigue,C., Lanois,A., Powell,K., Siguier,P., Wingate,V.,Zouine,M., Boemare,N., Danchin,A. and Kunst,(2003) F.Nat. Biotechnol