ISPfu3
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003413 | ND | Pyrococcus furiosus | Pyrococcus furiosus DSM 3638 |
DNA section
IS Length : 933 bp
Ends
IR Length : 15/16
IRL : ACCCTAGTTCCCATCAGGTCGTTAGAATTATTAAGTACTTAAATTTTTTG
IRR : ACCCTAGTTCCCACCATCTGTGAAGTTGTATAATCTGTCCAGATTCACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAAACTACA | TAAAACTTTT | TGATCGTCAA | 10 |
TTTTTTTCTTTATCTC | TTTAATTTATACTACTTTCATTTC | 0 | |
TTCCAGCTATTTTTCT | TTCCTTC | ATTTTCCTCTCCCTGGGCATA | 7 |
TAGTAATAAAACTACA | TAAAACTTTT | TGATCGTCAATTAATCA | 10 |
DNA sequence
ACCCTAGTTCCCATCAGGTCGTTAGAATTATTAAGTACTTAAATTTTTTGATTGGTTGGTGGTTGTTATGAACTTTCAGCAGGAAATCCTGATCATAAAA
TCCGAAATCTATCCGATAGTCAGCAAACACTACCCGAAAAACACTCGCAGGGAAGTAATCAGCCTCTACGACCTGATAACCTTCGCAATACTAGCCCACC
TGCACTTCGGAGGAGTTTACAAACACGCTTACGGAGCCCTAATCGAGGAAATGAAACTGTTCCCCAAAATCAGGTACAACAAACTAACAGAACGCTTGAA
CAGGCACGAAAAACTTCTGCTCCTAGCGCAGGAAGAATTATTCAAAAAACACGCCAGAGAATACGTTAGAATACTGGACTCAAAACCCATTCAGACCAAG
GAGTTGGCCAGAAAAAACAGGAAGGATAAGGAGGGTTCTTCAGAAATCATCTCTGAAAAGCCCGCAGTTGGGTTTGTTCCCTCTAAAAAAAGTTTTACTA
TGGGTACAAGCTGACCTGTTACTCTGATGGGAACCTGTTGGCTTTGCTGTCCGTTGATCCGGCAAACAAGCATGATGTGAGTGTTGTCAGGGAAAAGTTC
TGGGTGATTGTTGAGGAGTTTTCCGGCTGTTTTCTGTTTTTGGATAAGGGTTACGTTAGTAGAGAACTTCAGGAGGAATTCCTGAAGTTTGGCGTTGTTT
ACACGCCGGTGAAGCGGGAGAATCAGGTTAGTAATCTGGAGGAGAAGAAGTTTTACAAGTACTTGTCTGACTTTCGCAGAAGGATTGAGACTTTGTTTTC
GAAGTTTTCTGAGTTTCTTCTGAGGCCGAGCAGGAGTGTTAGTTTGAGGGGGTTAGCTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGA
TTATACAACTTCACAGATGGTGGGAACTAGGGT
TCCGAAATCTATCCGATAGTCAGCAAACACTACCCGAAAAACACTCGCAGGGAAGTAATCAGCCTCTACGACCTGATAACCTTCGCAATACTAGCCCACC
TGCACTTCGGAGGAGTTTACAAACACGCTTACGGAGCCCTAATCGAGGAAATGAAACTGTTCCCCAAAATCAGGTACAACAAACTAACAGAACGCTTGAA
CAGGCACGAAAAACTTCTGCTCCTAGCGCAGGAAGAATTATTCAAAAAACACGCCAGAGAATACGTTAGAATACTGGACTCAAAACCCATTCAGACCAAG
GAGTTGGCCAGAAAAAACAGGAAGGATAAGGAGGGTTCTTCAGAAATCATCTCTGAAAAGCCCGCAGTTGGGTTTGTTCCCTCTAAAAAAAGTTTTACTA
TGGGTACAAGCTGACCTGTTACTCTGATGGGAACCTGTTGGCTTTGCTGTCCGTTGATCCGGCAAACAAGCATGATGTGAGTGTTGTCAGGGAAAAGTTC
TGGGTGATTGTTGAGGAGTTTTCCGGCTGTTTTCTGTTTTTGGATAAGGGTTACGTTAGTAGAGAACTTCAGGAGGAATTCCTGAAGTTTGGCGTTGTTT
ACACGCCGGTGAAGCGGGAGAATCAGGTTAGTAATCTGGAGGAGAAGAAGTTTTACAAGTACTTGTCTGACTTTCGCAGAAGGATTGAGACTTTGTTTTC
GAAGTTTTCTGAGTTTCTTCTGAGGCCGAGCAGGAGTGTTAGTTTGAGGGGGTTAGCTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGA
TTATACAACTTCACAGATGGTGGGAACTAGGGT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
872 bp | 289 aa | 59 | 930 | + | Yes |
Chemistry : DDE
ORF sequence :
MVVMNFQQEILIIKSEIYPIVSKHYPKNTRREVISLYDLITFAILAHLHFGGVYKHAYGALIEEMKLFPKIRYNKLTERLNRHEKLLLLAQEELFKKHAR
EYVRILDSKPIQTKELARKNRKDKEGSSEIISEKPAVGFVPSKKKFYYGYKLTCYSDGNLLALLSVDPANKHDVSVVREKFWVIVEEFSGCFLFLDKGYV
SRELQEEFLKFGVVYTPVKRENQVSNLEEKKFYKYLSDFRRRIETLFSKFSEFLLRPSRSVSLRGLAVRILGAILAVNLDRLYNFTDGGN
EYVRILDSKPIQTKELARKNRKDKEGSSEIISEKPAVGFVPSKKKFYYGYKLTCYSDGNLLALLSVDPANKHDVSVVREKFWVIVEEFSGCFLFLDKGYV
SRELQEEFLKFGVVYTPVKRENQVSNLEEKKFYKYLSDFRRRIETLFSKFSEFLLRPSRSVSLRGLAVRILGAILAVNLDRLYNFTDGGN
Blast result :
Comments
There is a ribosomal slippage at position 489 of the sequence.
ISPfu3 is 51% aa similar to ISra1.
There are 5 full copies in the Pyrococcus furiosus genome.
Multiple alignments revealed conserved D(N3) and E(C1) amino acids separated by 47 residues.
ISPfu3 is 51% aa similar to ISra1.
There are 5 full copies in the Pyrococcus furiosus genome.
Multiple alignments revealed conserved D(N3) and E(C1) amino acids separated by 47 residues.
References
1] Robb,F.T., Maeder,D.L., Brown,J.R., DiRuggiero,J., Stump,M.D., Yeh,R.K., Weiss,R.B. and Dunn,D.M. (2001) Meth. Enzymol. 330, 134-157
2] Maeder,D.L., Weiss,R.B., Dunn,D.M., Cherry,J.L., Gonzalez,J.M., DiRuggiero,J. and Robb,F.T. (1999) Genetics 152 (4), 1299-1305
2] Maeder,D.L., Weiss,R.B., Dunn,D.M., Cherry,J.L., Gonzalez,J.M., DiRuggiero,J. and Robb,F.T. (1999) Genetics 152 (4), 1299-1305