ISPfr5

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1329 bp

Ends


IR Length : 27/31

IRL : TGTGTTGGGTCGGCACATAGGTGACAGGTGATGGGTGACACCTGAGTCGG
IRR : TGTCATGAGTCGGCACATAGGTGACAGATGAGTTGGCACATAGGTGTCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCACCTGTGCGGCGTCATTCCCGCACAACTGCC14
GTCACCTGTGCC/GGCGTCATTGT/CCGCACAACTGCC14

DNA sequence

TGTGTTGGGTCGGCACATAGGTGACAGGTGATGGGTGACACCTGAGTCGGCACATAGGTGACAGGCTCGTGCATGTCGAAGAACCATGTTGCGGTGATGT
CGGTGGTGTCTGGATCGATGAGCGTGGCGCAGGCTTCGCGGGAGTTCGGGATCAGTCGTCAGCATGTGTATCGGTTGGTCGCTCGTTATCGGGCCGAGGG
CCCCGAGGGGCTCGAGCCCCGTTCCAGGGCACCGCGGTCGCATCCGAACCAGACGCCCGCCCGGGTGCGTGAACGGATCATCGCGCTGCGTCGACAGTTG
GTCGGCGAGGGCCTGGACGCGGGTCCGCTGACGATCGCATGGCACCTGGAGCGAGACGGGGTCCGGCCCCCGGCCCATTCCACGATCCGCAGGATCCTGC
ATCAGGCCGGGCTGGTCAGGCCCGAACCCGACAAGCGTCCCCGTTCATCATTCATCCGGTTCAACGCCGACCTGCCCAACCAGACCTGGCAGTCCGATGT
CACCCACTGGCAACTGGCCGACGGCACCCCGGCCGACATCATTTCCTGGCTCGATGACCACTCACGTTGCCTGCTCCACATCTCGGCCCACCGTGCCGTA
TCGGTCCACACCGTGCTCGACACGTTCACCGCCACGATCGCCCTCCACGGGCCACCGGCCTCGACCCTGACCGACAACGGCATCATCTACACCACCCGCC
TGCTGGGAGGACCCAACAGCGGACCCAACCGCTTCGAGTTGTTCCTGGAGGCCATGGGGATCGTCCAGAAGAACGGTGGACCCCACCGGCCCACGACCCA
GGGCAAGATCGAACGGTTCCACCAGACCCTCAAGAGACGCCTGAACGCCAAACCCGACGCCCACGACATCGCCGACCTGCAAACCGTGCTCGAGGACTTC
CAGGACCTGTACAACCACCGCCGCCCCCACACCTCACTGGCACGACGCACCCCCGGCGACGTCTACCGGGCCAGCCCCAAGGACCGGCCCGACCCCACCG
GCCCACGACCCGTCCGCGACTCCGACTACCGCGTCAAGCACGTGCGGGTCCCCAGGGCCGGCGTCATCACCCTGCGCCACCACGGCGCCCCACACGCCCT
GGGCGTGGGCGCCGCCCACGCCGGCATCTCCACCGTGATCACCCTCGACGCGACCACCGTCACCGTTATCGACCCGACGACCGGACAGATCCTGTCGACC
CACCACATCGACCCCCACCGACGCTACTGGCCCAACACCCAACGCCCACCCGGACGATGGCCGAAACACGATCCCTGAGCTGACACCTATGTGCCAACTC
ATCTGTCACCTATGTGCCGACTCATGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa731278+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKNHVAVMSVVSGSMSVAQASREFGISRQHVYRLVARYRAEGPEGLEPRSRAPRSHPNQTPARVRERIIALRRQLVGEGLDAGPLTIAWHLERDGVRPP
AHSTIRRILHQAGLVRPEPDKRPRSSFIRFNADLPNQTWQSDVTHWQLADGTPADIISWLDDHSRCLLHISAHRAVSVHTVLDTFTATIALHGPPASTLT
DNGIIYTTRLLGGPNSGPNRFELFLEAMGIVQKNGGPHRPTTQGKIERFHQTLKRRLNAKPDAHDIADLQTVLEDFQDLYNHRRPHTSLARRTPGDVYRA
SPKDRPDPTGPRPVRDSDYRVKHVRVPRAGVITLRHHGAPHALGVGAAHAGISTVITLDATTVTVIDPTTGQILSTHHIDPHRRYWPNTQRPPGRWPKHD
P

 

Blast result :
Comments
ISPfr5 is 62% aa similar to IS3514.
References
1] ISfinder annotation (2009)