ISPfr5
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1329 bp
Ends
IR Length : 27/31
IRL : TGTGTTGGGTCGGCACATAGGTGACAGGTGATGGGTGACACCTGAGTCGG
IRR : TGTCATGAGTCGGCACATAGGTGACAGATGAGTTGGCACATAGGTGTCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCACCTGTG | CGGCGTCATTCCCG | CACAACTGCC | 14 |
GTCACCTGTG | CC/GGCGTCATTGT/CCG | CACAACTGCC | 14 |
DNA sequence
TGTGTTGGGTCGGCACATAGGTGACAGGTGATGGGTGACACCTGAGTCGGCACATAGGTGACAGGCTCGTGCATGTCGAAGAACCATGTTGCGGTGATGT
CGGTGGTGTCTGGATCGATGAGCGTGGCGCAGGCTTCGCGGGAGTTCGGGATCAGTCGTCAGCATGTGTATCGGTTGGTCGCTCGTTATCGGGCCGAGGG
CCCCGAGGGGCTCGAGCCCCGTTCCAGGGCACCGCGGTCGCATCCGAACCAGACGCCCGCCCGGGTGCGTGAACGGATCATCGCGCTGCGTCGACAGTTG
GTCGGCGAGGGCCTGGACGCGGGTCCGCTGACGATCGCATGGCACCTGGAGCGAGACGGGGTCCGGCCCCCGGCCCATTCCACGATCCGCAGGATCCTGC
ATCAGGCCGGGCTGGTCAGGCCCGAACCCGACAAGCGTCCCCGTTCATCATTCATCCGGTTCAACGCCGACCTGCCCAACCAGACCTGGCAGTCCGATGT
CACCCACTGGCAACTGGCCGACGGCACCCCGGCCGACATCATTTCCTGGCTCGATGACCACTCACGTTGCCTGCTCCACATCTCGGCCCACCGTGCCGTA
TCGGTCCACACCGTGCTCGACACGTTCACCGCCACGATCGCCCTCCACGGGCCACCGGCCTCGACCCTGACCGACAACGGCATCATCTACACCACCCGCC
TGCTGGGAGGACCCAACAGCGGACCCAACCGCTTCGAGTTGTTCCTGGAGGCCATGGGGATCGTCCAGAAGAACGGTGGACCCCACCGGCCCACGACCCA
GGGCAAGATCGAACGGTTCCACCAGACCCTCAAGAGACGCCTGAACGCCAAACCCGACGCCCACGACATCGCCGACCTGCAAACCGTGCTCGAGGACTTC
CAGGACCTGTACAACCACCGCCGCCCCCACACCTCACTGGCACGACGCACCCCCGGCGACGTCTACCGGGCCAGCCCCAAGGACCGGCCCGACCCCACCG
GCCCACGACCCGTCCGCGACTCCGACTACCGCGTCAAGCACGTGCGGGTCCCCAGGGCCGGCGTCATCACCCTGCGCCACCACGGCGCCCCACACGCCCT
GGGCGTGGGCGCCGCCCACGCCGGCATCTCCACCGTGATCACCCTCGACGCGACCACCGTCACCGTTATCGACCCGACGACCGGACAGATCCTGTCGACC
CACCACATCGACCCCCACCGACGCTACTGGCCCAACACCCAACGCCCACCCGGACGATGGCCGAAACACGATCCCTGAGCTGACACCTATGTGCCAACTC
ATCTGTCACCTATGTGCCGACTCATGACA
CGGTGGTGTCTGGATCGATGAGCGTGGCGCAGGCTTCGCGGGAGTTCGGGATCAGTCGTCAGCATGTGTATCGGTTGGTCGCTCGTTATCGGGCCGAGGG
CCCCGAGGGGCTCGAGCCCCGTTCCAGGGCACCGCGGTCGCATCCGAACCAGACGCCCGCCCGGGTGCGTGAACGGATCATCGCGCTGCGTCGACAGTTG
GTCGGCGAGGGCCTGGACGCGGGTCCGCTGACGATCGCATGGCACCTGGAGCGAGACGGGGTCCGGCCCCCGGCCCATTCCACGATCCGCAGGATCCTGC
ATCAGGCCGGGCTGGTCAGGCCCGAACCCGACAAGCGTCCCCGTTCATCATTCATCCGGTTCAACGCCGACCTGCCCAACCAGACCTGGCAGTCCGATGT
CACCCACTGGCAACTGGCCGACGGCACCCCGGCCGACATCATTTCCTGGCTCGATGACCACTCACGTTGCCTGCTCCACATCTCGGCCCACCGTGCCGTA
TCGGTCCACACCGTGCTCGACACGTTCACCGCCACGATCGCCCTCCACGGGCCACCGGCCTCGACCCTGACCGACAACGGCATCATCTACACCACCCGCC
TGCTGGGAGGACCCAACAGCGGACCCAACCGCTTCGAGTTGTTCCTGGAGGCCATGGGGATCGTCCAGAAGAACGGTGGACCCCACCGGCCCACGACCCA
GGGCAAGATCGAACGGTTCCACCAGACCCTCAAGAGACGCCTGAACGCCAAACCCGACGCCCACGACATCGCCGACCTGCAAACCGTGCTCGAGGACTTC
CAGGACCTGTACAACCACCGCCGCCCCCACACCTCACTGGCACGACGCACCCCCGGCGACGTCTACCGGGCCAGCCCCAAGGACCGGCCCGACCCCACCG
GCCCACGACCCGTCCGCGACTCCGACTACCGCGTCAAGCACGTGCGGGTCCCCAGGGCCGGCGTCATCACCCTGCGCCACCACGGCGCCCCACACGCCCT
GGGCGTGGGCGCCGCCCACGCCGGCATCTCCACCGTGATCACCCTCGACGCGACCACCGTCACCGTTATCGACCCGACGACCGGACAGATCCTGTCGACC
CACCACATCGACCCCCACCGACGCTACTGGCCCAACACCCAACGCCCACCCGGACGATGGCCGAAACACGATCCCTGAGCTGACACCTATGTGCCAACTC
ATCTGTCACCTATGTGCCGACTCATGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1206 bp | 401 aa | 73 | 1278 | + | No |
Chemistry : DDE
ORF sequence :
MSKNHVAVMSVVSGSMSVAQASREFGISRQHVYRLVARYRAEGPEGLEPRSRAPRSHPNQTPARVRERIIALRRQLVGEGLDAGPLTIAWHLERDGVRPP
AHSTIRRILHQAGLVRPEPDKRPRSSFIRFNADLPNQTWQSDVTHWQLADGTPADIISWLDDHSRCLLHISAHRAVSVHTVLDTFTATIALHGPPASTLT
DNGIIYTTRLLGGPNSGPNRFELFLEAMGIVQKNGGPHRPTTQGKIERFHQTLKRRLNAKPDAHDIADLQTVLEDFQDLYNHRRPHTSLARRTPGDVYRA
SPKDRPDPTGPRPVRDSDYRVKHVRVPRAGVITLRHHGAPHALGVGAAHAGISTVITLDATTVTVIDPTTGQILSTHHIDPHRRYWPNTQRPPGRWPKHD
P
AHSTIRRILHQAGLVRPEPDKRPRSSFIRFNADLPNQTWQSDVTHWQLADGTPADIISWLDDHSRCLLHISAHRAVSVHTVLDTFTATIALHGPPASTLT
DNGIIYTTRLLGGPNSGPNRFELFLEAMGIVQKNGGPHRPTTQGKIERFHQTLKRRLNAKPDAHDIADLQTVLEDFQDLYNHRRPHTSLARRTPGDVYRA
SPKDRPDPTGPRPVRDSDYRVKHVRVPRAGVITLRHHGAPHALGVGAAHAGISTVITLDATTVTVIDPTTGQILSTHHIDPHRRYWPNTQRPPGRWPKHD
P
Blast result :
Comments
ISPfr5 is 62% aa similar to IS3514.
References
1] ISfinder annotation (2009)