ISPepr2
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAJH01000017 | ND | Pelobacter propionicus | Pelobacter propionicus DSM 2379 |
DNA section
IS Length : 1081 bp
Ends
IR Length : 19/23
IRL : CGGAACTATCACCAATAAAAAGGCCATGATGACTTAATCTGTCTTATGCC
IRR : CGGAACTATCACCGAAAAGCAGGTCTTGGTGTAAAGATCCCACCAGCATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGATACTACTTTT | AAAATAAT | TGGATCTTTTT | 8 |
DNA sequence
CGGAACTATCACCAATAAAAAGGCCATGATGACTTAATCTGTCTTATGCCTGTTGTAACATGCTCTCATAAGGAGGGCATGCCATGAATATTCAAGAGTT
TCGCAAACAGTTTCCCGATGAGGAAACCTGCCATCGCTACCTGGAGCAGATGATTTGGCCAACTGGCCGTATCTGCCCTCACTGCGGAGGTATAAAGTCC
TGGAGCATATTGGCAGAGAGCAAGCGGTTTGAACTATATGAATGTGCTTCCTGTAGCAAGCAATTCACAGTCACCACCAAGACTCCGCTGCATAGCACCA
AGTTACCGCTGAGGACATGGTTTATGGCCATGTATTTCATGATCAACTCCAGCAAGGGTATTTCATCCATTTTCCTTGCTAAGTGGATCGGCACTTCCCA
GAAAACAGCCTGGAAGGTGGGCCATGCCGTTCGGGCACTCATGGCCTCACAGGCAGATGCAATGCCTGGCCTTGCCGGGATCGTTGAACTTGACGAGAAA
TATCTTGGCGGCAAACCCCGCTACCAAAAAGACGTCAAACACAAGCGCGGCAAAGGCACTGCAAAATCATGTGTATTCGTTGCCGCAAGCCGTGATGGTC
ATGTACGGGCAAGCGTTGTAGCAAACGATAGTTACTCAGAACTGGCTCCCAAGGTTAACCGGTTTGTTGATACATCAGCCGATCTTATGACAGACCAGCT
TTCCGTCTATCAGATGATTGCCGAAGACTATGCCAGCCACTCATCCGTGAATCATGGCAACAAGGAATACGCAAACGGAGACGTCCACAACAACACGGCT
GAATCATTCAATGCCATTCTTGAACGGGCTAAGCAGGGTGTATTTCACTTCCTGAGCAAAATGCACACTCAGCGGTACATCAGCGAGGTGGTATTCCGCT
GGAACCATCGTTACCCGGCAAGAGAAGTATCAAAAAACGGCACGAAAAAGATTATCTACAAAGCAAAGCCGATACTTGAGCAACTTCGATCACTGCTCCA
GTATGCAGTTGGAACTCAACTCCGAAGAACACATGCTGGTGGGATCTTTACACCAAGACCTGCTTTTCGGTGATAGTTCCG
TCGCAAACAGTTTCCCGATGAGGAAACCTGCCATCGCTACCTGGAGCAGATGATTTGGCCAACTGGCCGTATCTGCCCTCACTGCGGAGGTATAAAGTCC
TGGAGCATATTGGCAGAGAGCAAGCGGTTTGAACTATATGAATGTGCTTCCTGTAGCAAGCAATTCACAGTCACCACCAAGACTCCGCTGCATAGCACCA
AGTTACCGCTGAGGACATGGTTTATGGCCATGTATTTCATGATCAACTCCAGCAAGGGTATTTCATCCATTTTCCTTGCTAAGTGGATCGGCACTTCCCA
GAAAACAGCCTGGAAGGTGGGCCATGCCGTTCGGGCACTCATGGCCTCACAGGCAGATGCAATGCCTGGCCTTGCCGGGATCGTTGAACTTGACGAGAAA
TATCTTGGCGGCAAACCCCGCTACCAAAAAGACGTCAAACACAAGCGCGGCAAAGGCACTGCAAAATCATGTGTATTCGTTGCCGCAAGCCGTGATGGTC
ATGTACGGGCAAGCGTTGTAGCAAACGATAGTTACTCAGAACTGGCTCCCAAGGTTAACCGGTTTGTTGATACATCAGCCGATCTTATGACAGACCAGCT
TTCCGTCTATCAGATGATTGCCGAAGACTATGCCAGCCACTCATCCGTGAATCATGGCAACAAGGAATACGCAAACGGAGACGTCCACAACAACACGGCT
GAATCATTCAATGCCATTCTTGAACGGGCTAAGCAGGGTGTATTTCACTTCCTGAGCAAAATGCACACTCAGCGGTACATCAGCGAGGTGGTATTCCGCT
GGAACCATCGTTACCCGGCAAGAGAAGTATCAAAAAACGGCACGAAAAAGATTATCTACAAAGCAAAGCCGATACTTGAGCAACTTCGATCACTGCTCCA
GTATGCAGTTGGAACTCAACTCCGAAGAACACATGCTGGTGGGATCTTTACACCAAGACCTGCTTTTCGGTGATAGTTCCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 84 | 1073 | + | No |
Chemistry : DDE
ORF sequence :
MNIQEFRKQFPDEETCHRYLEQMIWPTGRICPHCGGIKSWSILAESKRFELYECASCSKQFTVTTKTPLHSTKLPLRTWFMAMYFMINSSKGISSIFLAK
WIGTSQKTAWKVGHAVRALMASQADAMPGLAGIVELDEKYLGGKPRYQKDVKHKRGKGTAKSCVFVAASRDGHVRASVVANDSYSELAPKVNRFVDTSAD
LMTDQLSVYQMIAEDYASHSSVNHGNKEYANGDVHNNTAESFNAILERAKQGVFHFLSKMHTQRYISEVVFRWNHRYPAREVSKNGTKKIIYKAKPILEQ
LRSLLQYAVGTQLRRTHAGGIFTPRPAFR
WIGTSQKTAWKVGHAVRALMASQADAMPGLAGIVELDEKYLGGKPRYQKDVKHKRGKGTAKSCVFVAASRDGHVRASVVANDSYSELAPKVNRFVDTSAD
LMTDQLSVYQMIAEDYASHSSVNHGNKEYANGDVHNNTAESFNAILERAKQGVFHFLSKMHTQRYISEVVFRWNHRYPAREVSKNGTKKIIYKAKPILEQ
LRSLLQYAVGTQLRRTHAGGIFTPRPAFR
Blast result :
Comments
ISPepr2 is 48% aa similar to ISHch1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission Genbank.