ISPepr2

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAJH01000017 ND Pelobacter propionicus
Pelobacter propionicus DSM 2379
DNA section
IS Length : 1081 bp

Ends


IR Length : 19/23

IRL : CGGAACTATCACCAATAAAAAGGCCATGATGACTTAATCTGTCTTATGCC
IRR : CGGAACTATCACCGAAAAGCAGGTCTTGGTGTAAAGATCCCACCAGCATG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGATACTACTTTTAAAATAATTGGATCTTTTT8

DNA sequence

CGGAACTATCACCAATAAAAAGGCCATGATGACTTAATCTGTCTTATGCCTGTTGTAACATGCTCTCATAAGGAGGGCATGCCATGAATATTCAAGAGTT
TCGCAAACAGTTTCCCGATGAGGAAACCTGCCATCGCTACCTGGAGCAGATGATTTGGCCAACTGGCCGTATCTGCCCTCACTGCGGAGGTATAAAGTCC
TGGAGCATATTGGCAGAGAGCAAGCGGTTTGAACTATATGAATGTGCTTCCTGTAGCAAGCAATTCACAGTCACCACCAAGACTCCGCTGCATAGCACCA
AGTTACCGCTGAGGACATGGTTTATGGCCATGTATTTCATGATCAACTCCAGCAAGGGTATTTCATCCATTTTCCTTGCTAAGTGGATCGGCACTTCCCA
GAAAACAGCCTGGAAGGTGGGCCATGCCGTTCGGGCACTCATGGCCTCACAGGCAGATGCAATGCCTGGCCTTGCCGGGATCGTTGAACTTGACGAGAAA
TATCTTGGCGGCAAACCCCGCTACCAAAAAGACGTCAAACACAAGCGCGGCAAAGGCACTGCAAAATCATGTGTATTCGTTGCCGCAAGCCGTGATGGTC
ATGTACGGGCAAGCGTTGTAGCAAACGATAGTTACTCAGAACTGGCTCCCAAGGTTAACCGGTTTGTTGATACATCAGCCGATCTTATGACAGACCAGCT
TTCCGTCTATCAGATGATTGCCGAAGACTATGCCAGCCACTCATCCGTGAATCATGGCAACAAGGAATACGCAAACGGAGACGTCCACAACAACACGGCT
GAATCATTCAATGCCATTCTTGAACGGGCTAAGCAGGGTGTATTTCACTTCCTGAGCAAAATGCACACTCAGCGGTACATCAGCGAGGTGGTATTCCGCT
GGAACCATCGTTACCCGGCAAGAGAAGTATCAAAAAACGGCACGAAAAAGATTATCTACAAAGCAAAGCCGATACTTGAGCAACTTCGATCACTGCTCCA
GTATGCAGTTGGAACTCAACTCCGAAGAACACATGCTGGTGGGATCTTTACACCAAGACCTGCTTTTCGGTGATAGTTCCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
990 bp329 aa841073+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIQEFRKQFPDEETCHRYLEQMIWPTGRICPHCGGIKSWSILAESKRFELYECASCSKQFTVTTKTPLHSTKLPLRTWFMAMYFMINSSKGISSIFLAK
WIGTSQKTAWKVGHAVRALMASQADAMPGLAGIVELDEKYLGGKPRYQKDVKHKRGKGTAKSCVFVAASRDGHVRASVVANDSYSELAPKVNRFVDTSAD
LMTDQLSVYQMIAEDYASHSSVNHGNKEYANGDVHNNTAESFNAILERAKQGVFHFLSKMHTQRYISEVVFRWNHRYPAREVSKNGTKKIIYKAKPILEQ
LRSLLQYAVGTQLRRTHAGGIFTPRPAFR

 

Blast result :
Comments
ISPepr2 is 48% aa similar to ISHch1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission Genbank.