ISPa62

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa HN39 plasmid pHN39-SIM
DNA section
IS Length : 1382 bp

Ends


IR Length : 16

IRL : tgctgtaATGGACTCTCCCCACACCACAGTTCTATACCAAGGTGTCGAGG
IRR : ----tatATGGACTCTCCCCACAAGCAGTGAGCAAAGCTTTGCTTTTGCA

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCTTGAACGAATTGTTAG0

DNA sequence

TGCTGTAATGGACTCTCCCCACACCACAGTTCTATACCAAGGTGTCGAGGTTTTCTGAGCGGGAGAGTCGTTATGAAGCGCATTGCCGTTGATCTGGCCA
AGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTTCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGTC
CGAGCCGGTCGAGTGGGTGATGGAGGCCTGTGGTACAGCGCATTACTGGGGGCGGTTGGCGCAATCGCTCGGTCATCAGGTGAAGCTGCTGCACCCGCGC
TACGTGCGGCCCTATCGCCGTCGTAACAAAACCGACCGTAATGACTGCGATGCCATGCTCGAAGCGGCGCGCTGCACCGACATTCATCCCGTGCCGGTGA
AGAGCCACGATCAACAACAGCTCCAGCAATTGCACGGGCTACGTGAAACCTGGAAGAAGAGCCGCACCCAGCGCATCAACCTGCTGCGCGGCATGCTGCG
TGAAGCGGGTATCGAAGCCCCAACGTCGACCGCAGCCTTCATCCGAGCTGCCAGTGAACTTGTAGACCAACCTGAACTCGCTTCCTTGAGCCGCCTGCTG
CATATCGTCCTGGCCGAGATCAACTTGTACGAACAGTGCATGGCTGAATGCGAACAGCAACTCAAGCGCTGGCATGCTGATGATGACATCGTGCGCAAAC
TGGATGAAGTCAGTGGCATTGGCCTGCTAACCGCCAGCGCCCTGACCGCCGCTGTCGGCAAGCCCGAACGCTTTGCCAATGGTCGCCAGCTCAGCGCCTG
GCTGGGTATGACGCCGCGTGAGTTCAGCAGTGGCAATAGCCGCAAGCTCGGCCATATCAGCCGGCAGGGCAATGTCTATGTGCGCACGTTACTGATCCAC
GGCTCACGTGCAGCCTTGCTCGCCGCACAACGCTGCCAGGCTCGAACGCCGGAAAAGCTGACGCAGTTACAGCGCTGGGCTGTGCAGACGGCGGCGCGTA
TCGGTCACAACAAAGCGGCGGTAGCACTGGCCAACAAGCTGGTGCGGATCTGCTGGGCGGTGTGGTGCCACGAGCGGCGGTTCAGTGGCAATTGGCAAAG
CGTTAGGCCCGCCTGACGGCGGGGGTAATCAGTAAAGGGGTGATGGTTTTCTTGTGGTTGTGGTGAGCAGCAGCACTGTCGGAACAGGCGAGTCCTGCAG
CGGAGCAAGGCCGATAACAATGATGATCCCCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCAGGGCTTGAACGTCCACAACA
GGCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAAAGCTTTGCTCACTGCTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa731116+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKRIAVDLAKSVYQVAESVRFGQVVQRKRLNREAFRRYIQEQSEPVEWVMEACGTAHYWGRLAQSLGHQVKLLHPRYVRPYRRRNKTDRNDCDAMLEAAR
CTDIHPVPVKSHDQQQLQQLHGLRETWKKSRTQRINLLRGMLREAGIEAPTSTAAFIRAASELVDQPELASLSRLLHIVLAEINLYEQCMAECEQQLKRW
HADDDIVRKLDEVSGIGLLTASALTAAVGKPERFANGRQLSAWLGMTPREFSSGNSRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVQTAARIGHNKAAVALANKLVRICWAVWCHERRFSGNWQSVRPA

 

Blast result :
Comments
ISPa62 is 96% aa similar to ISPa53. There is an empty site in Klebsiella pneumoniae plasmid pKP112 (LN864819).
References
1] Dongsheng Zhou (2015) Direct submission.