ISPa62
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa HN39 plasmid pHN39-SIM |
DNA section
IS Length : 1382 bp
Ends
IR Length : 16
IRL : tgctgtaATGGACTCTCCCCACACCACAGTTCTATACCAAGGTGTCGAGG
IRR : ----tatATGGACTCTCCCCACAAGCAGTGAGCAAAGCTTTGCTTTTGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGCTTGAA | CGAATTGTTAG | 0 |
DNA sequence
TGCTGTAATGGACTCTCCCCACACCACAGTTCTATACCAAGGTGTCGAGGTTTTCTGAGCGGGAGAGTCGTTATGAAGCGCATTGCCGTTGATCTGGCCA
AGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTTCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGTC
CGAGCCGGTCGAGTGGGTGATGGAGGCCTGTGGTACAGCGCATTACTGGGGGCGGTTGGCGCAATCGCTCGGTCATCAGGTGAAGCTGCTGCACCCGCGC
TACGTGCGGCCCTATCGCCGTCGTAACAAAACCGACCGTAATGACTGCGATGCCATGCTCGAAGCGGCGCGCTGCACCGACATTCATCCCGTGCCGGTGA
AGAGCCACGATCAACAACAGCTCCAGCAATTGCACGGGCTACGTGAAACCTGGAAGAAGAGCCGCACCCAGCGCATCAACCTGCTGCGCGGCATGCTGCG
TGAAGCGGGTATCGAAGCCCCAACGTCGACCGCAGCCTTCATCCGAGCTGCCAGTGAACTTGTAGACCAACCTGAACTCGCTTCCTTGAGCCGCCTGCTG
CATATCGTCCTGGCCGAGATCAACTTGTACGAACAGTGCATGGCTGAATGCGAACAGCAACTCAAGCGCTGGCATGCTGATGATGACATCGTGCGCAAAC
TGGATGAAGTCAGTGGCATTGGCCTGCTAACCGCCAGCGCCCTGACCGCCGCTGTCGGCAAGCCCGAACGCTTTGCCAATGGTCGCCAGCTCAGCGCCTG
GCTGGGTATGACGCCGCGTGAGTTCAGCAGTGGCAATAGCCGCAAGCTCGGCCATATCAGCCGGCAGGGCAATGTCTATGTGCGCACGTTACTGATCCAC
GGCTCACGTGCAGCCTTGCTCGCCGCACAACGCTGCCAGGCTCGAACGCCGGAAAAGCTGACGCAGTTACAGCGCTGGGCTGTGCAGACGGCGGCGCGTA
TCGGTCACAACAAAGCGGCGGTAGCACTGGCCAACAAGCTGGTGCGGATCTGCTGGGCGGTGTGGTGCCACGAGCGGCGGTTCAGTGGCAATTGGCAAAG
CGTTAGGCCCGCCTGACGGCGGGGGTAATCAGTAAAGGGGTGATGGTTTTCTTGTGGTTGTGGTGAGCAGCAGCACTGTCGGAACAGGCGAGTCCTGCAG
CGGAGCAAGGCCGATAACAATGATGATCCCCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCAGGGCTTGAACGTCCACAACA
GGCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAAAGCTTTGCTCACTGCTTGTGGGGAGAGTCCATATA
AGTCCGTTTACCAAGTTGCCGAGAGTGTCCGTTTCGGCCAGGTGGTGCAGCGCAAGCGGCTGAACCGAGAGGCGTTCCGGCGATATATACAGGAGCAGTC
CGAGCCGGTCGAGTGGGTGATGGAGGCCTGTGGTACAGCGCATTACTGGGGGCGGTTGGCGCAATCGCTCGGTCATCAGGTGAAGCTGCTGCACCCGCGC
TACGTGCGGCCCTATCGCCGTCGTAACAAAACCGACCGTAATGACTGCGATGCCATGCTCGAAGCGGCGCGCTGCACCGACATTCATCCCGTGCCGGTGA
AGAGCCACGATCAACAACAGCTCCAGCAATTGCACGGGCTACGTGAAACCTGGAAGAAGAGCCGCACCCAGCGCATCAACCTGCTGCGCGGCATGCTGCG
TGAAGCGGGTATCGAAGCCCCAACGTCGACCGCAGCCTTCATCCGAGCTGCCAGTGAACTTGTAGACCAACCTGAACTCGCTTCCTTGAGCCGCCTGCTG
CATATCGTCCTGGCCGAGATCAACTTGTACGAACAGTGCATGGCTGAATGCGAACAGCAACTCAAGCGCTGGCATGCTGATGATGACATCGTGCGCAAAC
TGGATGAAGTCAGTGGCATTGGCCTGCTAACCGCCAGCGCCCTGACCGCCGCTGTCGGCAAGCCCGAACGCTTTGCCAATGGTCGCCAGCTCAGCGCCTG
GCTGGGTATGACGCCGCGTGAGTTCAGCAGTGGCAATAGCCGCAAGCTCGGCCATATCAGCCGGCAGGGCAATGTCTATGTGCGCACGTTACTGATCCAC
GGCTCACGTGCAGCCTTGCTCGCCGCACAACGCTGCCAGGCTCGAACGCCGGAAAAGCTGACGCAGTTACAGCGCTGGGCTGTGCAGACGGCGGCGCGTA
TCGGTCACAACAAAGCGGCGGTAGCACTGGCCAACAAGCTGGTGCGGATCTGCTGGGCGGTGTGGTGCCACGAGCGGCGGTTCAGTGGCAATTGGCAAAG
CGTTAGGCCCGCCTGACGGCGGGGGTAATCAGTAAAGGGGTGATGGTTTTCTTGTGGTTGTGGTGAGCAGCAGCACTGTCGGAACAGGCGAGTCCTGCAG
CGGAGCAAGGCCGATAACAATGATGATCCCCGTGATCGATTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCAGGGCTTGAACGTCCACAACA
GGCCGGATATACGAATGCAACCGCGCTGACGACAGGTGCAAAAGCAAAGCTTTGCTCACTGCTTGTGGGGAGAGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 73 | 1116 | + | No |
Chemistry : DEDD
ORF sequence :
MKRIAVDLAKSVYQVAESVRFGQVVQRKRLNREAFRRYIQEQSEPVEWVMEACGTAHYWGRLAQSLGHQVKLLHPRYVRPYRRRNKTDRNDCDAMLEAAR
CTDIHPVPVKSHDQQQLQQLHGLRETWKKSRTQRINLLRGMLREAGIEAPTSTAAFIRAASELVDQPELASLSRLLHIVLAEINLYEQCMAECEQQLKRW
HADDDIVRKLDEVSGIGLLTASALTAAVGKPERFANGRQLSAWLGMTPREFSSGNSRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVQTAARIGHNKAAVALANKLVRICWAVWCHERRFSGNWQSVRPA
CTDIHPVPVKSHDQQQLQQLHGLRETWKKSRTQRINLLRGMLREAGIEAPTSTAAFIRAASELVDQPELASLSRLLHIVLAEINLYEQCMAECEQQLKRW
HADDDIVRKLDEVSGIGLLTASALTAAVGKPERFANGRQLSAWLGMTPREFSSGNSRKLGHISRQGNVYVRTLLIHGSRAALLAAQRCQARTPEKLTQLQ
RWAVQTAARIGHNKAAVALANKLVRICWAVWCHERRFSGNWQSVRPA
Blast result :
Comments
ISPa62 is 96% aa similar to ISPa53. There is an empty site in Klebsiella pneumoniae plasmid pKP112 (LN864819).
References
1] Dongsheng Zhou (2015) Direct submission.