ISPa14

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 788 bp

Ends


IR Length : 25

IRL : GGTGGTGTTTCAAAAAGTATGCTGAAACAAAGCAGGTTGAATTTTGATAA
IRR : GGTGGTGTTTCAAAAAGTATGCTGACATTAAATGAAGCCATTATTGATGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCGAAAAGACAAAAATTAT0

DNA sequence

GGTGGTGTTTCAAAAAGTATGCTGAAACAAAGCAGGTTGAATTTTGATAAAATAGAGAAATGCGAATAACTCTAGAAATCAAATGTCCAACCTGCCTCAG
TGACAGTATAAAGAAAAATGGCATCAAAGTAGATGGGAAACAAAACTATCAGTGCAAAGACTGTAAACGTCAGTTTATTGGTGACCATGCTCTGAGCTAT
CTAGGATGTCATTCAGGCATTACTCGAAAAATATTACAGTTGATGGTCAGAGGTAGTGGTATACGAGATATCGCTGAAGTTGAGCGAATCAGTATCGGTA
AAGTTTTACGTACTTTAACCGAATCGACCTACCAAATTCAGCCTAAACAAAGTCATTATGAGTCTCTTGAAGTTGATGAGTTTTGGACTTTTGTGGGAAA
TAAAAATAATAAACAATGGCTTATTTACGCCTACCATCGAGAAACAGGTGAGATTGTTGCTTATGTTTGGGGTAAAAGAGACTTAGCTACAGTTCAACGA
TTGAAGGCAAAGCTTAAACAATTAGGTATTCACTACACCCGAATTGCAAGTGATCATTGGGACAGTTTCATAACTGCTTTTAAAAACTGCAAGCAAAGTA
TTGGTAAATTTTTTACTGTAGGTATTGAAGGTAATAATTGCAAAATAAGGCATCGAATTAGGCGCGGTTTTAGAAGGAGTTGTAATTTTTCAAAAAAGAT
TGAAAACCATTTTAAAGCTTTCGACTTAACCTTTTTTTACATCAATAATGGCTTCATTTAATGTCAGCATACTTTTTGAAACACCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
702 bp233 aa60761+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRITLEIKCPTCLSDSIKKNGIKVDGKQNYQCKDCKRQFIGDHALSYLGCHSGITRKILQLMVRGSGIRDIAEVERISIGKVLRTLTESTYQIQPKQSHY
ESLEVDEFWTFVGNKNNKQWLIYAYHRETGEIVAYVWGKRDLATVQRLKAKLKQLGIHYTRIASDHWDSFITAFKNCKQSIGKFFTVGIEGNNCKIRHRI
RRGFRRSCNFSKKIENHFKAFDLTFFYINNGFI

 

Blast result :
Comments
ISPa14 is 97% aa similar to ISAba3. This sequence is disrupted by a composite transposon (ISPa12-ISPa13)which have generate a duplication . The sequence was reconstituted in silico by the deletion of the transposon and its site of duplication.
References
1] Laurent Poirel (2005) Direct submission.