ISPa14
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 788 bp
Ends
IR Length : 25
IRL : GGTGGTGTTTCAAAAAGTATGCTGAAACAAAGCAGGTTGAATTTTGATAA
IRR : GGTGGTGTTTCAAAAAGTATGCTGACATTAAATGAAGCCATTATTGATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCGAAAAGA | CAAAAATTAT | 0 |
DNA sequence
GGTGGTGTTTCAAAAAGTATGCTGAAACAAAGCAGGTTGAATTTTGATAAAATAGAGAAATGCGAATAACTCTAGAAATCAAATGTCCAACCTGCCTCAG
TGACAGTATAAAGAAAAATGGCATCAAAGTAGATGGGAAACAAAACTATCAGTGCAAAGACTGTAAACGTCAGTTTATTGGTGACCATGCTCTGAGCTAT
CTAGGATGTCATTCAGGCATTACTCGAAAAATATTACAGTTGATGGTCAGAGGTAGTGGTATACGAGATATCGCTGAAGTTGAGCGAATCAGTATCGGTA
AAGTTTTACGTACTTTAACCGAATCGACCTACCAAATTCAGCCTAAACAAAGTCATTATGAGTCTCTTGAAGTTGATGAGTTTTGGACTTTTGTGGGAAA
TAAAAATAATAAACAATGGCTTATTTACGCCTACCATCGAGAAACAGGTGAGATTGTTGCTTATGTTTGGGGTAAAAGAGACTTAGCTACAGTTCAACGA
TTGAAGGCAAAGCTTAAACAATTAGGTATTCACTACACCCGAATTGCAAGTGATCATTGGGACAGTTTCATAACTGCTTTTAAAAACTGCAAGCAAAGTA
TTGGTAAATTTTTTACTGTAGGTATTGAAGGTAATAATTGCAAAATAAGGCATCGAATTAGGCGCGGTTTTAGAAGGAGTTGTAATTTTTCAAAAAAGAT
TGAAAACCATTTTAAAGCTTTCGACTTAACCTTTTTTTACATCAATAATGGCTTCATTTAATGTCAGCATACTTTTTGAAACACCACC
TGACAGTATAAAGAAAAATGGCATCAAAGTAGATGGGAAACAAAACTATCAGTGCAAAGACTGTAAACGTCAGTTTATTGGTGACCATGCTCTGAGCTAT
CTAGGATGTCATTCAGGCATTACTCGAAAAATATTACAGTTGATGGTCAGAGGTAGTGGTATACGAGATATCGCTGAAGTTGAGCGAATCAGTATCGGTA
AAGTTTTACGTACTTTAACCGAATCGACCTACCAAATTCAGCCTAAACAAAGTCATTATGAGTCTCTTGAAGTTGATGAGTTTTGGACTTTTGTGGGAAA
TAAAAATAATAAACAATGGCTTATTTACGCCTACCATCGAGAAACAGGTGAGATTGTTGCTTATGTTTGGGGTAAAAGAGACTTAGCTACAGTTCAACGA
TTGAAGGCAAAGCTTAAACAATTAGGTATTCACTACACCCGAATTGCAAGTGATCATTGGGACAGTTTCATAACTGCTTTTAAAAACTGCAAGCAAAGTA
TTGGTAAATTTTTTACTGTAGGTATTGAAGGTAATAATTGCAAAATAAGGCATCGAATTAGGCGCGGTTTTAGAAGGAGTTGTAATTTTTCAAAAAAGAT
TGAAAACCATTTTAAAGCTTTCGACTTAACCTTTTTTTACATCAATAATGGCTTCATTTAATGTCAGCATACTTTTTGAAACACCACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
702 bp | 233 aa | 60 | 761 | + | No |
Chemistry : DDE
ORF sequence :
MRITLEIKCPTCLSDSIKKNGIKVDGKQNYQCKDCKRQFIGDHALSYLGCHSGITRKILQLMVRGSGIRDIAEVERISIGKVLRTLTESTYQIQPKQSHY
ESLEVDEFWTFVGNKNNKQWLIYAYHRETGEIVAYVWGKRDLATVQRLKAKLKQLGIHYTRIASDHWDSFITAFKNCKQSIGKFFTVGIEGNNCKIRHRI
RRGFRRSCNFSKKIENHFKAFDLTFFYINNGFI
ESLEVDEFWTFVGNKNNKQWLIYAYHRETGEIVAYVWGKRDLATVQRLKAKLKQLGIHYTRIASDHWDSFITAFKNCKQSIGKFFTVGIEGNNCKIRHRI
RRGFRRSCNFSKKIENHFKAFDLTFFYINNGFI
Blast result :
Comments
ISPa14 is 97% aa similar to ISAba3. This sequence is disrupted by a composite transposon (ISPa12-ISPa13)which have generate a duplication . The sequence was reconstituted in silico by the deletion of the transposon and its site of duplication.
References
1] Laurent Poirel (2005) Direct submission.