ISPa12
- Family IS4
- Group ISH8
Isoform Synonym(s) ISPa23
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Salmonella typhimurium Providencia stuartii Pseudomonas aeruginosa RNL-1 |
DNA section
IS Length : 1387 bp
Ends
IR Length : 19/20
IRL : TCATACGTATGATCTTTAGGATTTGAATAGGTGCTTCATTCGTGATCTAA
IRR : TCATACGTATGTCTTTAGCGAGCTAACATCATGATTCATATGTGATTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGCAGCCAA | AGCTGCCT | TTTTAAGTCT | 8 |
DNA sequence
TCATACGTATGATCTTTAGGATTTGAATAGGTGCTTCATTCGTGATCTAATTGATTTTGCGAATAAAATAGAACGCCCAGAGGGCTAAAACGAATGAAGC
AAAATCAGATTACCGCATTTTCAACCATTTTTGAAGCCCTGTTTTCAGAGCAACAATTAAATTCACTTGGTGTTCAAACTCACATGATTGAACGCTTTCG
CCTGATCACTCCCGCAAAACTTTGCCTGGCATTTGTGTGTGCCCTGGGAAGTGGAAATGCCCGCACAATCGCTGATATACATCGTTACTTTAACCACTTG
CATTCGATGTCAGTACGCCTTAAACCATTCCATAATCAGTTAGTTAAGCTCGGAACTCCTGAATTTATGCGTCAAGTGTTTGAGCAGGCGCTGGCACTTC
ATTTGCCAGCCATGCACACCTTTTCGGACGCCTATCGGGGGCATTTCAAGCAGGTACTGTTGCAGGATGGCACCAGTTTCGCTGTTCATGACGGCCTCAG
CCTGCATTTCCCCGGGCGATTCAGTACACACTCTCCTGCGGCAGTGGAGCTTCACGTGACCTATGACCTTGAAAAAGCCCAGCCTGTCCGCGTTTCTCTG
AGCGAAGATACTGCATCTGAACGCGACTATCTCCCCGTAGCTCAAAGTCTACGTGGTTGTTTGCTCATGGCCGATGCAGGTTATTTTTCAAAAGCTTACA
TTGAATCGCTCCAAAACGAAGCGGCCAGCTTTGTGCTTCGGATGCCCGCTTCGGTGAATCCAATGGCGACTTGCAACCAAACAGGACTCTGTCAGCCGCT
ACGCAGCTGGCTGGCCGTATTGCCTAAGCATGGCGAATTGGATTTGGATGTGCAGTGGCCAGATGGTCCGGTGTACCGTTGTGTTTTGTTTGCTTCCACT
GACCATAAAGACAAACCGGTTTGTCTGTGTACAAATTTGGACCGGCACACATTCCCAGCCGCAACAGTGGGCGAATGGTATCGTCTGCGCTGGCAGATAG
AACTCTTGTTCAAAGAATGGAAATCGTTGAATAGTTTGAATAAATTTAATACGGAATACTCAACGATAGCCGAAACGTTGATTTGGGGAAGTCTGCTGGC
GGCAACGCTCAAGCGTTGGTTAATCAACGGAGCACAGCAAAAATATCGGCGAGTGTTGTCCATGTTCAGCGGGGCCAAAACAGCCAATCAGTGGTGGCTT
CCCTTTTGTATAAAATGGGCTTGTTCAGGGATAACTGAAATTGCTGCGGAATTGGGTAAGGTTTTTGCGTTTCTCGCGGAACATTGCCAGAGGGTAAATG
TAAAGCGAGATCAAAAATCAGGGGCTTTTAAAGTATTGGAAATCACATATGAATCATGATGTTAGCTCGCTAAAGACATACGTATGA
AAAATCAGATTACCGCATTTTCAACCATTTTTGAAGCCCTGTTTTCAGAGCAACAATTAAATTCACTTGGTGTTCAAACTCACATGATTGAACGCTTTCG
CCTGATCACTCCCGCAAAACTTTGCCTGGCATTTGTGTGTGCCCTGGGAAGTGGAAATGCCCGCACAATCGCTGATATACATCGTTACTTTAACCACTTG
CATTCGATGTCAGTACGCCTTAAACCATTCCATAATCAGTTAGTTAAGCTCGGAACTCCTGAATTTATGCGTCAAGTGTTTGAGCAGGCGCTGGCACTTC
ATTTGCCAGCCATGCACACCTTTTCGGACGCCTATCGGGGGCATTTCAAGCAGGTACTGTTGCAGGATGGCACCAGTTTCGCTGTTCATGACGGCCTCAG
CCTGCATTTCCCCGGGCGATTCAGTACACACTCTCCTGCGGCAGTGGAGCTTCACGTGACCTATGACCTTGAAAAAGCCCAGCCTGTCCGCGTTTCTCTG
AGCGAAGATACTGCATCTGAACGCGACTATCTCCCCGTAGCTCAAAGTCTACGTGGTTGTTTGCTCATGGCCGATGCAGGTTATTTTTCAAAAGCTTACA
TTGAATCGCTCCAAAACGAAGCGGCCAGCTTTGTGCTTCGGATGCCCGCTTCGGTGAATCCAATGGCGACTTGCAACCAAACAGGACTCTGTCAGCCGCT
ACGCAGCTGGCTGGCCGTATTGCCTAAGCATGGCGAATTGGATTTGGATGTGCAGTGGCCAGATGGTCCGGTGTACCGTTGTGTTTTGTTTGCTTCCACT
GACCATAAAGACAAACCGGTTTGTCTGTGTACAAATTTGGACCGGCACACATTCCCAGCCGCAACAGTGGGCGAATGGTATCGTCTGCGCTGGCAGATAG
AACTCTTGTTCAAAGAATGGAAATCGTTGAATAGTTTGAATAAATTTAATACGGAATACTCAACGATAGCCGAAACGTTGATTTGGGGAAGTCTGCTGGC
GGCAACGCTCAAGCGTTGGTTAATCAACGGAGCACAGCAAAAATATCGGCGAGTGTTGTCCATGTTCAGCGGGGCCAAAACAGCCAATCAGTGGTGGCTT
CCCTTTTGTATAAAATGGGCTTGTTCAGGGATAACTGAAATTGCTGCGGAATTGGGTAAGGTTTTTGCGTTTCTCGCGGAACATTGCCAGAGGGTAAATG
TAAAGCGAGATCAAAAATCAGGGGCTTTTAAAGTATTGGAAATCACATATGAATCATGATGTTAGCTCGCTAAAGACATACGTATGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 422 aa | 94 | 1359 | + | No |
Chemistry : DDE
ORF sequence :
MKQNQITAFSTIFEALFSEQQLNSLGVQTHMIERFRLITPAKLCLAFVCALGSGNARTIADIHRYFNHLHSMSVRLKPFHNQLVKLGTPEFMRQVFEQAL
ALHLPAMHTFSDAYRGHFKQVLLQDGTSFAVHDGLSLHFPGRFSTHSPAAVELHVTYDLEKAQPVRVSLSEDTASERDYLPVAQSLRGCLLMADAGYFSK
AYIESLQNEAASFVLRMPASVNPMATCNQTGLCQPLRSWLAVLPKHGELDLDVQWPDGPVYRCVLFASTDHKDKPVCLCTNLDRHTFPAATVGEWYRLRW
QIELLFKEWKSLNSLNKFNTEYSTIAETLIWGSLLAATLKRWLINGAQQKYRRVLSMFSGAKTANQWWLPFCIKWACSGITEIAAELGKVFAFLAEHCQR
VNVKRDQKSGAFKVLEITYES
ALHLPAMHTFSDAYRGHFKQVLLQDGTSFAVHDGLSLHFPGRFSTHSPAAVELHVTYDLEKAQPVRVSLSEDTASERDYLPVAQSLRGCLLMADAGYFSK
AYIESLQNEAASFVLRMPASVNPMATCNQTGLCQPLRSWLAVLPKHGELDLDVQWPDGPVYRCVLFASTDHKDKPVCLCTNLDRHTFPAATVGEWYRLRW
QIELLFKEWKSLNSLNKFNTEYSTIAETLIWGSLLAATLKRWLINGAQQKYRRVLSMFSGAKTANQWWLPFCIKWACSGITEIAAELGKVFAFLAEHCQR
VNVKRDQKSGAFKVLEITYES
Blast result :
Comments
ISPa12 is 43% aa similar to ISH8E.
This IS was found associated with the same resistance gene in three bacterial species. There is a short DR in this single case observed in Pseudomonas aeruginosa ( ATTGTCCTTT(ISPa12)TTTACGCCTA ). On the other hand, in Salmonella typhimurium, a DR of 8 bp was observed.
This IS was found associated with the same resistance gene in three bacterial species. There is a short DR in this single case observed in Pseudomonas aeruginosa ( ATTGTCCTTT(ISPa12)TTTACGCCTA ). On the other hand, in Salmonella typhimurium, a DR of 8 bp was observed.
References