ISNwi4
- Family IS1595
- Group ISNha5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007406 | ND | Nitrobacter winogradskyi | Nitrobacter winogradskyi Nb-255 |
DNA section
IS Length : 3671 bp
Ends
IR Length : 23
IRL : CGGTATTAGGTAGCAAACTCACCTTGGTATTTATATCAGCAACACTGACA
IRR : CGGTATTAGGTAGCAAACTCACCAAGCAACGGATGGCGGTTTTCCTGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGATCGTCGAAC | CACTTCCG | CACAGCGGTCC | 8 |
DNA sequence
CGGTATTAGGTAGCAAACTCACCTTGGTATTTATATCAGCAACACTGACATGTCGAGTCCACAAGGCTTATTAACTAAATCTTAACCAAAGATTCTAGGA
ACAAATGTGGGCCACGGCTTGGTTGGGGTTGATTTCAGTCCAGTTCCAGACTACAAGACTCAGCTATGGAGACCTTGCGAGAATTTATCACCCGGCGTCA
TAAAGAATTGGACGAGCTAGAAGCTCCGCTCCGGCAGCAACTAGCCGCCATAGCCGACGAGCGCGAAGAGCTTCGTCGTGCTGCACTTGCAGCCGGTCCG
CCGCCCATGCGTCCGGCTAATACCGTAACTCAGCAAGCGGACGAAGGCCGCCGATCACGCCGCACGATTCCTGAAAAGACAATCAAAGACGCCGTTGTCG
AGGTTCTAAGAGCCAAGGGCTCCGGGATGACTGCGCTAGAAATCTTGGCTGCCATTAATCTCAAGTTCGGGACGGAATATCCGAGAACCAGCCTAAGCCC
GCAGCTTTCACGCCTGAAAGCAGACGGGAAAATCAATCGGGATGGCATCGTATGGACGCTTGAAAAGAAGCTTATCGACTACGTCGATCAGCCGTTCCAA
CGGGATATCGAGGAGGCTTTTAAATGAAAACCGGAGCCTTTCGGCCCCGGTTCAAAGAGCTTGGGGGTGCATAGTGCAAGGGCGAGTTGTCCAGCTCGGG
CCCCGGCGGGTGCAAGTCCCGCTATCTCCACCAAGTAGCCCCTTCCACAAGGGCTGCGAGTCAATCCCTTCCAAAAGGATTGGCCTATCGTCTACTGGCT
CCCCTCCAAAAGGAGCCACCCTTAACTTTCTTATAGAATCACACCTGACGGGCTACTACAAGGCCTTGCTCTTTTTCAGTCTCTACAAATGAAATACCAC
CGGTTTCCAAAGCAGCTTTCATTGCCGTTAGATTGTTTCGGGTTGGCTCCCGCCGCCCCGCCTCAAAGTCTCTTACGGTTGAGACGCCGACGTTCGCGGC
TTTTGCAAGCGCGTCTTGAGGCCAATTTAGCCATGCTCGGGCGGCTCGACACTGTTCCGGGGTCATTGCCGGAATCTAGTGACCCTAACTATTTCCGTCA
AGGTCATAGATTTTCGTTGACGCCATCACTTTCATTACTTATCAATGAGGTCAACGGAAAACGTTGGTCTCATGTCGCAACACTTCCTCCTCTCAGCAAA
GGCGCGGACGCTCAGTCTGGCGAAGGTCGCGCGCCTTTCTGACGACGAGGCTTATGATGCGTTCCGGCTGATCCGTTGGGCCGCGACCGATGGTGCGCCG
GTTTGTCCGCGTTGCGAATGTGCTGCCGTCTACACCTACACGACCCGCCGCCTATTCAAGTGCAAGGCTTGCTCGCATCAGTTCTCAGTTACGTCGGACA
CGATCTTCGCAAGTCGTAAGCTCCCGGTGCGCGACTATCTCTTGGCTATTGCGATCTTCGTCAACGGCGCAAAAGGCCATAGCGCGCTTCAACTGAGCCG
CGATCTCGATTGCCAGTATAAGACTGCTTTCGTGATGGCTCACAAAATCCGCGAGGCGTTGGCTTCGGAAGCTCATGGCGCAATCGCCTCTGGCGAGGTC
GAAGTGGATGGCGCATACTTCGGCGGCTACGTGAAGCCTGCAAACCACAAAGGTAACCGCCGCGACCGCCGCCGCATCATCAATCAGAACGGCAAGCGAC
GCGTGGTTGTCATCATGCGTGAGCGAGGCGGGCGCACGCTGCCTTTCGTTTTTAAGAGCGAAGATGCTTCGCTTGTGAAGATCGCCCAAACCGTTGCACC
CGGCAGCGTCATTCACGCGGATGAAGCGACGCATTGGGACGCGCTACATGCGCGCTTCCTGACCAAGCGGATCAATCACAGCGAAAGTTATTCGGACGGC
GATGCTTGCACCAATCAAGCGGAGTCGTTTTTCTCTCGGATGCGCCGCGCCGAAATCGGCGTTCATCATCGTATCGCTGGCGACTATCTATCAGCCTATG
CTGGTGAAATGGCTTGGCGCGAAAACAATCGCCGTATCAGCAACGGCGAACAATATCTGATGGTGGCGGACGCCGCTTTGCAACATCCGGTATCGCGTCA
GTGGAAAGGTTATTGGCAACGAAACTCTTGACTCGGTCGTGAGTTAACGCTTGAACCACTTCGAATCCGCTTGGGACAAGCGCCCCTAAGCAGATTCTTG
GTAGCTGTCAAGCCTTTTTGATTGAGTGTTGCCAAAATCCCTCATATAATGCGATCTCGAATCGCCGATGAGGGCATCTGCTCCACCGGAGCGGTCGCGT
GCGATTCAGGAGAATACCTATGCCGGTCAAACAAGGCCTTGGCCTTCCAATCAGACACATCCCCATTTCAGGCCCGGCGGTCGATTTGCTCGATTCCCGC
AAAGAGCATAACGACAATAGTCCTGTGACCGCGCAAGAGTTGCGCGTTAGCTTCGAAAAGGTCAAAACGAGCCTGTTTTCGGGGTTAGACACGCTGTTGC
AGTCCAAAATCTAAGGACTCAACATACCTAACCCTCAAGGAACGGGGGCCTTACAATTGAGCGAGCCTGACTTCTCAGAAACCAAAATTTCTGAGCGCGT
AGAATTTTTGCTCAATGTTGCGCAAGAACTGATTGAACGCGGTATCCTGCCTGACGAAAAACTAATTCTGCACGAGGGCAGAGTTCGCCTTGCTGTTGAA
TCATATTTTCTCCTCAACAAGGCCTATAAAAAGTGGCGTATTAATTCTGGGCATCACACCGAGAAACCTAAAATTGCTGCTCTACAAGCAACTACGATCG
CCCGCATTCAGCCCTTTATCCCAATTAACCACGCCAACGCAGAAACGTTAGCGGAAGCGCGCTGCAATGAGATTTTCGCTCTAACTTATGCGTTCGCCAT
TCTTGAAAAAGACTTCAATCCCAGTACGCCTCCCAAGAAGGATCTGACGCTGAGGCTGTTAGATATCATCAGCGCGTCTGAGGTTGAGGCGATTGAGCCC
TACATCCAAGACACCAACCTAGAAATCAAAAGAAAGTTGGACGAATACACATTGGCGATTCCGCCATCTGACAAGCATAAGATCGATAGTCTAATCACAA
TCTTTGAGCTAATTTCAGCAAAGGGCGACGCCCTTAAGTAAGCTATCGTCTAATCTCCCAAAGCCGCTGCCGCCCCTCACCAGTTTTGTGAGTGAGGGCC
CCTTGTTCTGTCAGACCTCTGAGGGCCTTTGAGACTCTTTTGGTTACGTCAGTTAGCGCACGTCTGTCTCGCGCATCCTGACCGTTCAAAGCCACGATAG
CCTGAGCTATCTCGCGGCTTCCAAGCGGTCGCGGCGCGTCTCTCAATTCATCCAAAATCGCCCGCGTTAGCTCGCCCCGTCCGAACAGGACCTGCCGTTT
CTGGCGCGGCATTTCCGCATTCAGATCGCCGGTATAGCCAAGCGTTCCTAGCACCCGATCCAGCGCGCCAATGTCGTTCTTAATCTCGGCCATCCGGTCG
CGGATACGCTCGGCTTCGTTGAATAGATCGGCGCGCTTTTTCAGCAAGCCGGAAATGGTGTGTTCGTAGGTGTCGGTTCGGGCAAGGCGGATGGTGTCTG
ACATCCCGCATTGTGTGACTCACACAGGAAAACCGCCATCCGTTGCTTGGTGAGTTTGCTACCTAATACCG
ACAAATGTGGGCCACGGCTTGGTTGGGGTTGATTTCAGTCCAGTTCCAGACTACAAGACTCAGCTATGGAGACCTTGCGAGAATTTATCACCCGGCGTCA
TAAAGAATTGGACGAGCTAGAAGCTCCGCTCCGGCAGCAACTAGCCGCCATAGCCGACGAGCGCGAAGAGCTTCGTCGTGCTGCACTTGCAGCCGGTCCG
CCGCCCATGCGTCCGGCTAATACCGTAACTCAGCAAGCGGACGAAGGCCGCCGATCACGCCGCACGATTCCTGAAAAGACAATCAAAGACGCCGTTGTCG
AGGTTCTAAGAGCCAAGGGCTCCGGGATGACTGCGCTAGAAATCTTGGCTGCCATTAATCTCAAGTTCGGGACGGAATATCCGAGAACCAGCCTAAGCCC
GCAGCTTTCACGCCTGAAAGCAGACGGGAAAATCAATCGGGATGGCATCGTATGGACGCTTGAAAAGAAGCTTATCGACTACGTCGATCAGCCGTTCCAA
CGGGATATCGAGGAGGCTTTTAAATGAAAACCGGAGCCTTTCGGCCCCGGTTCAAAGAGCTTGGGGGTGCATAGTGCAAGGGCGAGTTGTCCAGCTCGGG
CCCCGGCGGGTGCAAGTCCCGCTATCTCCACCAAGTAGCCCCTTCCACAAGGGCTGCGAGTCAATCCCTTCCAAAAGGATTGGCCTATCGTCTACTGGCT
CCCCTCCAAAAGGAGCCACCCTTAACTTTCTTATAGAATCACACCTGACGGGCTACTACAAGGCCTTGCTCTTTTTCAGTCTCTACAAATGAAATACCAC
CGGTTTCCAAAGCAGCTTTCATTGCCGTTAGATTGTTTCGGGTTGGCTCCCGCCGCCCCGCCTCAAAGTCTCTTACGGTTGAGACGCCGACGTTCGCGGC
TTTTGCAAGCGCGTCTTGAGGCCAATTTAGCCATGCTCGGGCGGCTCGACACTGTTCCGGGGTCATTGCCGGAATCTAGTGACCCTAACTATTTCCGTCA
AGGTCATAGATTTTCGTTGACGCCATCACTTTCATTACTTATCAATGAGGTCAACGGAAAACGTTGGTCTCATGTCGCAACACTTCCTCCTCTCAGCAAA
GGCGCGGACGCTCAGTCTGGCGAAGGTCGCGCGCCTTTCTGACGACGAGGCTTATGATGCGTTCCGGCTGATCCGTTGGGCCGCGACCGATGGTGCGCCG
GTTTGTCCGCGTTGCGAATGTGCTGCCGTCTACACCTACACGACCCGCCGCCTATTCAAGTGCAAGGCTTGCTCGCATCAGTTCTCAGTTACGTCGGACA
CGATCTTCGCAAGTCGTAAGCTCCCGGTGCGCGACTATCTCTTGGCTATTGCGATCTTCGTCAACGGCGCAAAAGGCCATAGCGCGCTTCAACTGAGCCG
CGATCTCGATTGCCAGTATAAGACTGCTTTCGTGATGGCTCACAAAATCCGCGAGGCGTTGGCTTCGGAAGCTCATGGCGCAATCGCCTCTGGCGAGGTC
GAAGTGGATGGCGCATACTTCGGCGGCTACGTGAAGCCTGCAAACCACAAAGGTAACCGCCGCGACCGCCGCCGCATCATCAATCAGAACGGCAAGCGAC
GCGTGGTTGTCATCATGCGTGAGCGAGGCGGGCGCACGCTGCCTTTCGTTTTTAAGAGCGAAGATGCTTCGCTTGTGAAGATCGCCCAAACCGTTGCACC
CGGCAGCGTCATTCACGCGGATGAAGCGACGCATTGGGACGCGCTACATGCGCGCTTCCTGACCAAGCGGATCAATCACAGCGAAAGTTATTCGGACGGC
GATGCTTGCACCAATCAAGCGGAGTCGTTTTTCTCTCGGATGCGCCGCGCCGAAATCGGCGTTCATCATCGTATCGCTGGCGACTATCTATCAGCCTATG
CTGGTGAAATGGCTTGGCGCGAAAACAATCGCCGTATCAGCAACGGCGAACAATATCTGATGGTGGCGGACGCCGCTTTGCAACATCCGGTATCGCGTCA
GTGGAAAGGTTATTGGCAACGAAACTCTTGACTCGGTCGTGAGTTAACGCTTGAACCACTTCGAATCCGCTTGGGACAAGCGCCCCTAAGCAGATTCTTG
GTAGCTGTCAAGCCTTTTTGATTGAGTGTTGCCAAAATCCCTCATATAATGCGATCTCGAATCGCCGATGAGGGCATCTGCTCCACCGGAGCGGTCGCGT
GCGATTCAGGAGAATACCTATGCCGGTCAAACAAGGCCTTGGCCTTCCAATCAGACACATCCCCATTTCAGGCCCGGCGGTCGATTTGCTCGATTCCCGC
AAAGAGCATAACGACAATAGTCCTGTGACCGCGCAAGAGTTGCGCGTTAGCTTCGAAAAGGTCAAAACGAGCCTGTTTTCGGGGTTAGACACGCTGTTGC
AGTCCAAAATCTAAGGACTCAACATACCTAACCCTCAAGGAACGGGGGCCTTACAATTGAGCGAGCCTGACTTCTCAGAAACCAAAATTTCTGAGCGCGT
AGAATTTTTGCTCAATGTTGCGCAAGAACTGATTGAACGCGGTATCCTGCCTGACGAAAAACTAATTCTGCACGAGGGCAGAGTTCGCCTTGCTGTTGAA
TCATATTTTCTCCTCAACAAGGCCTATAAAAAGTGGCGTATTAATTCTGGGCATCACACCGAGAAACCTAAAATTGCTGCTCTACAAGCAACTACGATCG
CCCGCATTCAGCCCTTTATCCCAATTAACCACGCCAACGCAGAAACGTTAGCGGAAGCGCGCTGCAATGAGATTTTCGCTCTAACTTATGCGTTCGCCAT
TCTTGAAAAAGACTTCAATCCCAGTACGCCTCCCAAGAAGGATCTGACGCTGAGGCTGTTAGATATCATCAGCGCGTCTGAGGTTGAGGCGATTGAGCCC
TACATCCAAGACACCAACCTAGAAATCAAAAGAAAGTTGGACGAATACACATTGGCGATTCCGCCATCTGACAAGCATAAGATCGATAGTCTAATCACAA
TCTTTGAGCTAATTTCAGCAAAGGGCGACGCCCTTAAGTAAGCTATCGTCTAATCTCCCAAAGCCGCTGCCGCCCCTCACCAGTTTTGTGAGTGAGGGCC
CCTTGTTCTGTCAGACCTCTGAGGGCCTTTGAGACTCTTTTGGTTACGTCAGTTAGCGCACGTCTGTCTCGCGCATCCTGACCGTTCAAAGCCACGATAG
CCTGAGCTATCTCGCGGCTTCCAAGCGGTCGCGGCGCGTCTCTCAATTCATCCAAAATCGCCCGCGTTAGCTCGCCCCGTCCGAACAGGACCTGCCGTTT
CTGGCGCGGCATTTCCGCATTCAGATCGCCGGTATAGCCAAGCGTTCCTAGCACCCGATCCAGCGCGCCAATGTCGTTCTTAATCTCGGCCATCCGGTCG
CGGATACGCTCGGCTTCGTTGAATAGATCGGCGCGCTTTTTCAGCAAGCCGGAAATGGTGTGTTCGTAGGTGTCGGTTCGGGCAAGGCGGATGGTGTCTG
ACATCCCGCATTGTGTGACTCACACAGGAAAACCGCCATCCGTTGCTTGGTGAGTTTGCTACCTAATACCG
Protein section
ORF number : 4
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
228 bp | 75 aa | 839 | 1066 | - | No |
Annotation : Transcriptional regulator, XRE familyDescription : Transcriptional Regulator factor
ORF sequence :
MTPEQCRAARAWLNWPQDALAKAANVGVSTPTRNNLTAMKAALETGGISFVRDFEAGRREVETEKEQGLVVARQV
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
462 bp | 153 aa | 166 | 627 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
METLREFITRRHKELDELEAPLRQQLAAIADEREELRRAALAAGPPPMRPANTVTQQADEGRRSRRTIPEKTIKDAVVEVLRAKGSGMTALEILAAINLK
FGTEYPRTSLSPQLSRLKADGKINRDGIVWTLEKKLIDYVDQPFQRDIEEAFK
FGTEYPRTSLSPQLSRLKADGKINRDGIVWTLEKKLIDYVDQPFQRDIEEAFK
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 1145 | 2131 | + | No |
Chemistry : DDE
ORF sequence :
MRSTENVGLMSQHFLLSAKARTLSLAKVARLSDDEAYDAFRLIRWAATDGAPVCPRCECAAVYTYTTRRLFKCKACSHQFSVTSDTIFASRKLPVRDYLL
AIAIFVNGAKGHSALQLSRDLDCQYKTAFVMAHKIREALASEAHGAIASGEVEVDGAYFGGYVKPANHKGNRRDRRRIINQNGKRRVVVIMRERGGRTLP
FVFKSEDASLVKIAQTVAPGSVIHADEATHWDALHARFLTKRINHSESYSDGDACTNQAESFFSRMRRAEIGVHHRIAGDYLSAYAGEMAWRENNRRISN
GEQYLMVADAALQHPVSRQWKGYWQRNS
AIAIFVNGAKGHSALQLSRDLDCQYKTAFVMAHKIREALASEAHGAIASGEVEVDGAYFGGYVKPANHKGNRRDRRRIINQNGKRRVVVIMRERGGRTLP
FVFKSEDASLVKIAQTVAPGSVIHADEATHWDALHARFLTKRINHSESYSDGDACTNQAESFFSRMRRAEIGVHHRIAGDYLSAYAGEMAWRENNRRISN
GEQYLMVADAALQHPVSRQWKGYWQRNS
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
462 bp | 153 aa | 3143 | 3604 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MSDTIRLARTDTYEHTISGLLKKRADLFNEAERIRDRMAEIKNDIGALDRVLGTLGYTGDLNAEMPRQKRQVLFGRGELTRAILDELRDAPRPLGSREIA
QAIVALNGQDARDRRALTDVTKRVSKALRGLTEQGALTHKTGEGRQRLWEIRR
QAIVALNGQDARDRRALTDVTKRVSKALRGLTEQGALTHKTGEGRQRLWEIRR
Blast result :
Comments
The third ORF is the transposase, others are passengers genes.
ISNwi4 is 86% aa similar to ISAzca1.
ISNwi4 is 86% aa similar to ISAzca1.
References
1] Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J.(2006) Appl. Environ. Microbiol. 72 (3), 2050-2063