ISNwi1

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007406 ND Nitrobacter winogradskyi
Nitrobacter winogradskyi Nb-255
DNA section
IS Length : 2348 bp

Ends


IR Length : 24/25

IRL : CAGCATTATAACCTTGACAAAGCAGAGTAGCATTGGGTAGATTGCTCGTA
IRR : GAGCATTATAACCTTGACAAAGCAGATACCATGATTAGTAGTAAAGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CCATTCTAAGCTTTGCTACCTATTGTAGG8

DNA sequence

CAGCATTATAACCTTGACAAAGCAGAGTAGCATTGGGTAGATTGCTCGTATTGGAGCAAGCCCATGACCGATCTACTAAAAAACCCTATTTTCCAAGACG
AGACCAAGGCCCGCGATTGGCTTGAAGCGCGCGTTTGGGCCAACGGTCGGGTCTGCCCGCATTGCGGAAACGCCGATCAGGAAAAGATCACTAAACTTGA
GGGCAAGGCGCACCGCCCCGGCGTGTACCAGTGCAACGAACCCGCCTGTCGCGAACAGTTCACCGTGACCGTGGGCACCGTTTTCGAGCGCTCCAAAATC
CCGCTGACTAAGTGGCTTGCCGCGCTTTTCCTCATGACCGCTTCCAAGAAAGGCGTGAGCGCGCATCAGGTTCACCGCATGTTGGGTATTAGCTACAAAT
CTACTTGGTTCCTGATGCACCGCTTGCGTGAGGCAATGCGTACAGGCGGACTTGAGCCGCTTGGTGGCGAAGGCAAAATCGTTGAGGCCGATGAGACCTA
TTTCGGCAAAGCCGACACTCAGCGCGTCTCACCGCAGCGCAAGGGCCGTACCTTCACCAAAAATCGCAAGATTAAAAATGACCGCCCTATCGTTTCCCTT
GTAGAGCGCGGCGGTAACGTTCGTTCGTTTCATGTCGCGGTTGCGGATAGTTCAACTGTGGCCTGTATTGTAAACGCGAACGTTCACAAGGAAAGCCGAT
TACAAACCGATGAAAGCCGCCTCTACACCAAAGTTGGCGCTGACTTCGCCGCACATGAGACCGTCAACCACGGCGCAAAAGAATATGCGCGCGGCGATGT
GACGACTAACACGATTGAAAGCTACTTCTCAGTTTTCAAGCGCGGTATGCGCGGCACCTATCAGCATTGCTCCGAAAAACATCTGCACCGCTACCTCGCG
GAGTTTGATTTCCGCTACAACAACCGCATCGCGTTAGGCGTAAATGATACTGACCGCGCCAACGAACTGGCTAAGGGCATCGTTGGAAAACGATTAACGT
ATCGACGGCCTAACTCAAAGGACGTTCAAACTTAAGGCGCTACGCTTCCTGCGCTGGAAGCGTAAACAACCCAAACCTAAGCCGAAAGCTTGTCAAATAC
TGGAGGACAAAATAGCCAAGCGACTCGACTCCAGCCATTCCAGACTCCTAGATTGTGGGCGTTCATGATCACAACCTCGGAGAATGGAATGGCTAACGAC
GCTTACGAGAGTCAGAAGGTTCAGGCACTTCAGGCAATAAATCAGACGCTTGGGCGCATTTTGATGGAAATTCAGCAGGTAAAGGAAGCCCAGCAGCGGA
TCGCCGCGCAGGCAGAGACCCGCTAAGAAACTCATAGAACAAATCTGCCCGCGCAACGCTCACCATTGCATCCTCGCCTATTGAGGCGAAGCGGGCAGAT
AGCTCGATTGCGCGCGCCCGTCGTTGCGCAGTCATTTAACCGCTTTCTTCTTCGTCGCCTTCTTCCCCTTCGGCTTTTCCTTTGCCCGATGCTGCGGCGG
GCTTTTCGCGACCACATTCACGGCGCGCTCAAAGCGCTGCATCGCGTCAGGGTGAAACTCTATTTCCTTTACGGGGGTTTTTGCCATGTCCGAGCCCACT
GATGCCGACATTCTGTCTATCACACTAACCGGCACCCCACTTGATAGCCCGTCAGATATAGAAACCGCAGGCGAACTATTCAAAGCGCTTGGCATAGCAT
CCAGTTCCTGGATGCGGCTAGAGATGCACCTGGACATGGTTCTGATGTTTTTAAACCGGCCCCATTATTCCAAGAACCTATATGAACCAGATCACCCAGT
AGGCTTCAAAAGCAAAATTAAGCTGCTTAAAAGATGGTTTAACCAACACCCTGTCCTGAGTGTCTTCGCTGACGAGTTTCGATGTCTGGCTGGGCCAATA
CTCAGTCTAAGCCGAACTAGAAATATTTTCCTGCACTCTATCCTTGCTAGCTTTGACCCAAAGACAAAGAAGGGGGTTTGGCGCTCCATCAAAGCCGAAT
CACAGGATACCTATAAGGCCAGCATGCATATCGGCAGTGTTGGGATGTTGATCAGCTTCGCGGATGAGACAAATAAGAAACACTTTGAACTCGCCAGAGT
CACAAAGAAAATCATGACTCCCGATGTGCTCGCACAGCTTCGAACACCTTGACCGCGCAATCAGCGTCTAAGTCGTCGCAGTCTTCGTGCTGATGGGCGT
TGATGATTCGAGACACCTCATCCAAGCAAGCTGGCGTCATGCCCGCTGGGAGCACAACACCACGATAGGAAACATCGGGCGCGCCATCCCCTTGCGGGGC
GGCTTTACTACTAATCATGGTATCTGCTTTGTCAAGGTTATAATGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa641035+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDLLKNPIFQDETKARDWLEARVWANGRVCPHCGNADQEKITKLEGKAHRPGVYQCNEPACREQFTVTVGTVFERSKIPLTKWLAALFLMTASKKGVSA
HQVHRMLGISYKSTWFLMHRLREAMRTGGLEPLGGEGKIVEADETYFGKADTQRVSPQRKGRTFTKNRKIKNDRPIVSLVERGGNVRSFHVAVADSSTVA
CIVNANVHKESRLQTDESRLYTKVGADFAAHETVNHGAKEYARGDVTTNTIESYFSVFKRGMRGTYQHCSEKHLHRYLAEFDFRYNNRIALGVNDTDRAN
ELAKGIVGKRLTYRRPNSKDVQT

 

Blast result :
Comments
ISNwi1 is 52% aa similar to ISSpo8. The genome sequence showed that the entire IS element is significantly longer than the transposase ORF.(ISFinder annotation)
References
1] Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J.(2006) Appl. Environ. Microbiol. 72 (3), 2050-2063