ISNwi1
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007406 | ND | Nitrobacter winogradskyi | Nitrobacter winogradskyi Nb-255 |
DNA section
IS Length : 2348 bp
Ends
IR Length : 24/25
IRL : CAGCATTATAACCTTGACAAAGCAGAGTAGCATTGGGTAGATTGCTCGTA
IRR : GAGCATTATAACCTTGACAAAGCAGATACCATGATTAGTAGTAAAGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCATTCTAAG | CTTTGCTA | CCTATTGTAGG | 8 |
DNA sequence
CAGCATTATAACCTTGACAAAGCAGAGTAGCATTGGGTAGATTGCTCGTATTGGAGCAAGCCCATGACCGATCTACTAAAAAACCCTATTTTCCAAGACG
AGACCAAGGCCCGCGATTGGCTTGAAGCGCGCGTTTGGGCCAACGGTCGGGTCTGCCCGCATTGCGGAAACGCCGATCAGGAAAAGATCACTAAACTTGA
GGGCAAGGCGCACCGCCCCGGCGTGTACCAGTGCAACGAACCCGCCTGTCGCGAACAGTTCACCGTGACCGTGGGCACCGTTTTCGAGCGCTCCAAAATC
CCGCTGACTAAGTGGCTTGCCGCGCTTTTCCTCATGACCGCTTCCAAGAAAGGCGTGAGCGCGCATCAGGTTCACCGCATGTTGGGTATTAGCTACAAAT
CTACTTGGTTCCTGATGCACCGCTTGCGTGAGGCAATGCGTACAGGCGGACTTGAGCCGCTTGGTGGCGAAGGCAAAATCGTTGAGGCCGATGAGACCTA
TTTCGGCAAAGCCGACACTCAGCGCGTCTCACCGCAGCGCAAGGGCCGTACCTTCACCAAAAATCGCAAGATTAAAAATGACCGCCCTATCGTTTCCCTT
GTAGAGCGCGGCGGTAACGTTCGTTCGTTTCATGTCGCGGTTGCGGATAGTTCAACTGTGGCCTGTATTGTAAACGCGAACGTTCACAAGGAAAGCCGAT
TACAAACCGATGAAAGCCGCCTCTACACCAAAGTTGGCGCTGACTTCGCCGCACATGAGACCGTCAACCACGGCGCAAAAGAATATGCGCGCGGCGATGT
GACGACTAACACGATTGAAAGCTACTTCTCAGTTTTCAAGCGCGGTATGCGCGGCACCTATCAGCATTGCTCCGAAAAACATCTGCACCGCTACCTCGCG
GAGTTTGATTTCCGCTACAACAACCGCATCGCGTTAGGCGTAAATGATACTGACCGCGCCAACGAACTGGCTAAGGGCATCGTTGGAAAACGATTAACGT
ATCGACGGCCTAACTCAAAGGACGTTCAAACTTAAGGCGCTACGCTTCCTGCGCTGGAAGCGTAAACAACCCAAACCTAAGCCGAAAGCTTGTCAAATAC
TGGAGGACAAAATAGCCAAGCGACTCGACTCCAGCCATTCCAGACTCCTAGATTGTGGGCGTTCATGATCACAACCTCGGAGAATGGAATGGCTAACGAC
GCTTACGAGAGTCAGAAGGTTCAGGCACTTCAGGCAATAAATCAGACGCTTGGGCGCATTTTGATGGAAATTCAGCAGGTAAAGGAAGCCCAGCAGCGGA
TCGCCGCGCAGGCAGAGACCCGCTAAGAAACTCATAGAACAAATCTGCCCGCGCAACGCTCACCATTGCATCCTCGCCTATTGAGGCGAAGCGGGCAGAT
AGCTCGATTGCGCGCGCCCGTCGTTGCGCAGTCATTTAACCGCTTTCTTCTTCGTCGCCTTCTTCCCCTTCGGCTTTTCCTTTGCCCGATGCTGCGGCGG
GCTTTTCGCGACCACATTCACGGCGCGCTCAAAGCGCTGCATCGCGTCAGGGTGAAACTCTATTTCCTTTACGGGGGTTTTTGCCATGTCCGAGCCCACT
GATGCCGACATTCTGTCTATCACACTAACCGGCACCCCACTTGATAGCCCGTCAGATATAGAAACCGCAGGCGAACTATTCAAAGCGCTTGGCATAGCAT
CCAGTTCCTGGATGCGGCTAGAGATGCACCTGGACATGGTTCTGATGTTTTTAAACCGGCCCCATTATTCCAAGAACCTATATGAACCAGATCACCCAGT
AGGCTTCAAAAGCAAAATTAAGCTGCTTAAAAGATGGTTTAACCAACACCCTGTCCTGAGTGTCTTCGCTGACGAGTTTCGATGTCTGGCTGGGCCAATA
CTCAGTCTAAGCCGAACTAGAAATATTTTCCTGCACTCTATCCTTGCTAGCTTTGACCCAAAGACAAAGAAGGGGGTTTGGCGCTCCATCAAAGCCGAAT
CACAGGATACCTATAAGGCCAGCATGCATATCGGCAGTGTTGGGATGTTGATCAGCTTCGCGGATGAGACAAATAAGAAACACTTTGAACTCGCCAGAGT
CACAAAGAAAATCATGACTCCCGATGTGCTCGCACAGCTTCGAACACCTTGACCGCGCAATCAGCGTCTAAGTCGTCGCAGTCTTCGTGCTGATGGGCGT
TGATGATTCGAGACACCTCATCCAAGCAAGCTGGCGTCATGCCCGCTGGGAGCACAACACCACGATAGGAAACATCGGGCGCGCCATCCCCTTGCGGGGC
GGCTTTACTACTAATCATGGTATCTGCTTTGTCAAGGTTATAATGCTC
AGACCAAGGCCCGCGATTGGCTTGAAGCGCGCGTTTGGGCCAACGGTCGGGTCTGCCCGCATTGCGGAAACGCCGATCAGGAAAAGATCACTAAACTTGA
GGGCAAGGCGCACCGCCCCGGCGTGTACCAGTGCAACGAACCCGCCTGTCGCGAACAGTTCACCGTGACCGTGGGCACCGTTTTCGAGCGCTCCAAAATC
CCGCTGACTAAGTGGCTTGCCGCGCTTTTCCTCATGACCGCTTCCAAGAAAGGCGTGAGCGCGCATCAGGTTCACCGCATGTTGGGTATTAGCTACAAAT
CTACTTGGTTCCTGATGCACCGCTTGCGTGAGGCAATGCGTACAGGCGGACTTGAGCCGCTTGGTGGCGAAGGCAAAATCGTTGAGGCCGATGAGACCTA
TTTCGGCAAAGCCGACACTCAGCGCGTCTCACCGCAGCGCAAGGGCCGTACCTTCACCAAAAATCGCAAGATTAAAAATGACCGCCCTATCGTTTCCCTT
GTAGAGCGCGGCGGTAACGTTCGTTCGTTTCATGTCGCGGTTGCGGATAGTTCAACTGTGGCCTGTATTGTAAACGCGAACGTTCACAAGGAAAGCCGAT
TACAAACCGATGAAAGCCGCCTCTACACCAAAGTTGGCGCTGACTTCGCCGCACATGAGACCGTCAACCACGGCGCAAAAGAATATGCGCGCGGCGATGT
GACGACTAACACGATTGAAAGCTACTTCTCAGTTTTCAAGCGCGGTATGCGCGGCACCTATCAGCATTGCTCCGAAAAACATCTGCACCGCTACCTCGCG
GAGTTTGATTTCCGCTACAACAACCGCATCGCGTTAGGCGTAAATGATACTGACCGCGCCAACGAACTGGCTAAGGGCATCGTTGGAAAACGATTAACGT
ATCGACGGCCTAACTCAAAGGACGTTCAAACTTAAGGCGCTACGCTTCCTGCGCTGGAAGCGTAAACAACCCAAACCTAAGCCGAAAGCTTGTCAAATAC
TGGAGGACAAAATAGCCAAGCGACTCGACTCCAGCCATTCCAGACTCCTAGATTGTGGGCGTTCATGATCACAACCTCGGAGAATGGAATGGCTAACGAC
GCTTACGAGAGTCAGAAGGTTCAGGCACTTCAGGCAATAAATCAGACGCTTGGGCGCATTTTGATGGAAATTCAGCAGGTAAAGGAAGCCCAGCAGCGGA
TCGCCGCGCAGGCAGAGACCCGCTAAGAAACTCATAGAACAAATCTGCCCGCGCAACGCTCACCATTGCATCCTCGCCTATTGAGGCGAAGCGGGCAGAT
AGCTCGATTGCGCGCGCCCGTCGTTGCGCAGTCATTTAACCGCTTTCTTCTTCGTCGCCTTCTTCCCCTTCGGCTTTTCCTTTGCCCGATGCTGCGGCGG
GCTTTTCGCGACCACATTCACGGCGCGCTCAAAGCGCTGCATCGCGTCAGGGTGAAACTCTATTTCCTTTACGGGGGTTTTTGCCATGTCCGAGCCCACT
GATGCCGACATTCTGTCTATCACACTAACCGGCACCCCACTTGATAGCCCGTCAGATATAGAAACCGCAGGCGAACTATTCAAAGCGCTTGGCATAGCAT
CCAGTTCCTGGATGCGGCTAGAGATGCACCTGGACATGGTTCTGATGTTTTTAAACCGGCCCCATTATTCCAAGAACCTATATGAACCAGATCACCCAGT
AGGCTTCAAAAGCAAAATTAAGCTGCTTAAAAGATGGTTTAACCAACACCCTGTCCTGAGTGTCTTCGCTGACGAGTTTCGATGTCTGGCTGGGCCAATA
CTCAGTCTAAGCCGAACTAGAAATATTTTCCTGCACTCTATCCTTGCTAGCTTTGACCCAAAGACAAAGAAGGGGGTTTGGCGCTCCATCAAAGCCGAAT
CACAGGATACCTATAAGGCCAGCATGCATATCGGCAGTGTTGGGATGTTGATCAGCTTCGCGGATGAGACAAATAAGAAACACTTTGAACTCGCCAGAGT
CACAAAGAAAATCATGACTCCCGATGTGCTCGCACAGCTTCGAACACCTTGACCGCGCAATCAGCGTCTAAGTCGTCGCAGTCTTCGTGCTGATGGGCGT
TGATGATTCGAGACACCTCATCCAAGCAAGCTGGCGTCATGCCCGCTGGGAGCACAACACCACGATAGGAAACATCGGGCGCGCCATCCCCTTGCGGGGC
GGCTTTACTACTAATCATGGTATCTGCTTTGTCAAGGTTATAATGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 64 | 1035 | + | No |
Chemistry : DDE
ORF sequence :
MTDLLKNPIFQDETKARDWLEARVWANGRVCPHCGNADQEKITKLEGKAHRPGVYQCNEPACREQFTVTVGTVFERSKIPLTKWLAALFLMTASKKGVSA
HQVHRMLGISYKSTWFLMHRLREAMRTGGLEPLGGEGKIVEADETYFGKADTQRVSPQRKGRTFTKNRKIKNDRPIVSLVERGGNVRSFHVAVADSSTVA
CIVNANVHKESRLQTDESRLYTKVGADFAAHETVNHGAKEYARGDVTTNTIESYFSVFKRGMRGTYQHCSEKHLHRYLAEFDFRYNNRIALGVNDTDRAN
ELAKGIVGKRLTYRRPNSKDVQT
HQVHRMLGISYKSTWFLMHRLREAMRTGGLEPLGGEGKIVEADETYFGKADTQRVSPQRKGRTFTKNRKIKNDRPIVSLVERGGNVRSFHVAVADSSTVA
CIVNANVHKESRLQTDESRLYTKVGADFAAHETVNHGAKEYARGDVTTNTIESYFSVFKRGMRGTYQHCSEKHLHRYLAEFDFRYNNRIALGVNDTDRAN
ELAKGIVGKRLTYRRPNSKDVQT
Blast result :
Comments
ISNwi1 is 52% aa similar to ISSpo8. The genome sequence showed that the entire IS element is significantly longer than the transposase ORF.(ISFinder annotation)
References
1] Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J.(2006) Appl. Environ. Microbiol. 72 (3), 2050-2063