ISNgo3

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002946 ND Neisseria gonorrhoeae
Neisseria meningitidis
Neisseria gonorrhoeae
DNA section
IS Length : 1121 bp

Ends


Left end : AGGAAAATACCAATGAATATAATCGGGCCGGACATCTCAAAGGACACCATAGACGCAACATTGCATAAAACAAACGGAAGTATCCATTACATTAAATTTA
Right end : GCATATCGTAAATAAACGTAAATAAAAATAACAATATAAATCAGCATGTTGCAACTTTGTTTTTTATTTTGTGTTGACGGGCAACATATCATCTGCGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTATAAATAAAAGTTACCG0
TGTATAAATAGAATGACGGG0
TGTATAAATAGAATGACGGC0

DNA sequence

AGGAAAATACCAATGAATATAATCGGGCCGGACATCTCAAAGGACACCATAGACGCAACATTGCATAAAACAAACGGAAGTATCCATTACATTAAATTTA
AGAATAATGATGATGGATTAAAACAGTTTAGATTGTGGATAAAGGGAAACAGAATCAGAAAAGTCTATATCGGCATGGAGGCAACAGGCATCTATTACGA
AAAGGCAGCAGATATGCTTTCTTCCTACTATACCGTTTACGTTATCAATCCCTTAAAAATCAAGGACTACGGAAAAAGCAGGTTTAACCGCACCAAAACC
GACAAAGCAGATTCAAACCTGATAGCAGATTACATAAAAAGGCATCAAGATACATTGATACCGTATCAGATACCCAAAAACAAAGCACTGCAAAAACTGA
TTAATCTTAAAAACCAATTACAGCAACAGCAGAAGCAAATTAAAAACCGTCTTCATAGCACTGAAGAAGACTTCATAAGGAACATACATCAAGACTTGAT
AGATACCATACAGGACAAGATGGAACAGGTAAAAATAGCCATATCCGAACAAATCAAAAAACAAACGGACAATAACCATTACCGCAATCTTCAAACCATC
CCGAGCATAGGCAAAGACACCGCATCAGTTCTTTATGCGCAACTGACAGAAAAACATTTTAAAACCGCAAACCAATTTGTATCCTATGCCGGATTAAGTC
CCGCCATCATACAATCAGGGACAAGCGTAAGAGGTCGGGGCAGATTGAGCCGATACGGAAACAGACGATTAAAAAGTACGCTGTATATGCCCGCCCTTTG
TGCTTACCGTTTTAACGCATTTCCGAAATTAATAAATAATCTGAAAAAAGCGGGTAAGCCAAAGATGGTAATTATCGTTGCCATCATGCGCAAACTGGCG
AAGCCCGCCTATTACATTGTTAAAACCGGCCAGCCTTACGATGCGGAAAGACACCGATTGAATCAATAAAATTCAACAAAATTAAACGGTTGCGCGAATA
TATTTGTGTAACCGTGCATTTGCATATCGTAAATAAACGTAAATAAAAATAACAATATAAATCAGCATGTTGCAACTTTGTTTTTTATTTTGTGTTGACG
GGCAACATATCATCTGCGCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa13969+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNIIGPDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKVYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKAD
SNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIG
KDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAY
YIVKTGQPYDAERHRLNQ

 

Blast result :
Comments
The accession number provided is the web site for the full Neisseria gonorrhoeae genome sequence (http://www.genome.ou.edu/gono.html)
ISNgo3 is 51% aa similar to ISIMb1.
References
1] Skaar, E.P., B. LeCuyer, A.G. Lenich, M. P. Lazio, D. Perkins-Balding, H.S. Seifert, and A.C. Karls. 2004. Analysis of the Piv Recombinase-Related Gene Family of Neisseria gonorrhoeae. J. Bacteriol. submitted.