ISMpo2

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010725 ND Methylobacterium populi
Methylobacterium populi BJ001
DNA section
IS Length : 3089 bp

Ends


IR Length : 27/33

IRL : GGCGATTATATCGTTGACACATACGACAACCGGAAGTAGGTTTTAGCTCT
IRR : GGCAATTATACCGTTTGCACATACGCGACCGGCAATGGCCGCTTTTCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTCTCTCGGGTAAACAAATGGGCTGGAGAGCGC8

DNA sequence

GGCGATTATATCGTTGACACATACGACAACCGGAAGTAGGTTTTAGCTCTAGGAGCTAAACCGATGTCCGCCCTGTCCGCCGCCTTCTTCCACGACGAGG
CCGCCGCCTTCGCCAAGCTGGAAAGCCTGATTTGGCCGGAAGGCCCCGTCTGCCCTCACTGCGGCGGCATGGGCCGGATCACGAACGTCAAGGGCGGTCG
CATGGGCCTTCGCCGTTGCGGCGACTGCAAGAAGCAGTTCACCGTCACGGTCGGCACGGTCTTCGAGTCCAGCCATGTAAAGCTGCACCTGTGGCTCCAG
GCTGCTCACCTTCTCGCGTCCAGCAAGAAGGGCTTCTCCGCGCATCAACTGCACCGAACCCTCGGCGTCACCTACAAGACCGCGTGGTTCATGTTCCATC
GGCTGCGCGAGGCGATGCGCGACGGCGCTCTTGCTCCAATGGGCGGTCTGGATGGCCCGGCCGGTGGTGCTGGCATCGTGGAAGCCGACGAGACCTTCAT
CGGCCGTGAGCCGGGCAAGCCGAAGAAGCGCGCCTATCACCACAAGATGAAGGTGCTGAGCCTCGTGGATCGTGACACGAAGCAGGTTCGCTCCGTCGTC
GTGGACGATCTAAAGCCCGATACGGTGAAGCCGATCCTCGCAGCGAACATCGCCAAGGAAGCCAGCCTCTTCACCGACGAGGCGGGCCACTACGTGAAGC
TCGGCAAGGACTTCATCGAGCACCAGATCACGTCCCACGGCAAAGGCGAGTACGTGCGCGGTATCGTCCACACGAACACCGTCGAGGGCTACTTCTCCGT
CTTCAAGCGCGGCATGAAGGGCGTCTATCAGCACTGCGGCAAGCAGCACCTTCACCGCTACCTCGCCGAGTTCGATTTCCGGTACAATAACCGGGCGAAG
CTCGGAGTCGGCGATGTCGCCCGGACAGAGCGCGCCTTATATGGTATCATCGGGAAGCGGCTGACGTACCGGTCAGCTAACAGGCCGCAAGCGATAAATG
GATGAGAGCCGCATAAGCCTGACCATCGTCCCCTCCGGGGGAGATGAAGGATCAGTTCTTGTCAGCGACTTCCTCAAGCAGGTTGACGCGTTGAAGAAGC
TTGTCGGTTATGCATCTCGGACCAACACTGTCGAGGCAAGGATAGTTGGGCTGTCCATGAACAGCCCGGCCTCAGTCGAAATTGAAGCCTTCAACGCCTC
CAACAATGCGGCCGTCCCGGTAGGTGCGTTTTTTCACGATGTATATAATGTTGTTGAAAAGGCTGCGACGCCCATCAATCTAGAGCGTGAGGTTTTCGAT
ACCATCAAAGATTTTGCGAGCGTTGTTGGTAAAGGCGTCAATAGCACCATCATTGTTGCCGCAGGCAACGAGATTAAATTCGATATTATCGCAAAGGACC
GCATAGACGGAATATTCGGCCAAGATTATTCTCGCCATGGCACGGCTGACGGCATGCTTGAGGCCGTTAATATTCATGGGAAGATCAACAATTGCGCTCT
ATATCCGCTTGTTGGGCCAAAGAGAATTAGTTGCAGGTTCGAAGAGCATCTATTTAAGAAGATTAAGCCGGCGCTCGGCAAATACGTCATGATAGAGGGC
ATTTTGAAATATCGATGGCGAGAGAAGTTCCCTCACGCCGCCGACATTCACAAGATTGATGTGCTTCCAAGCTGGGACGAGCAGCCAAGCTTTGAAGATA
TCTTAGGTATGGCTTCCAACGCGACGCATGGCGAAGCTTCAGAGGAATTCGTGAAGGCGCGTCGGTATGGCTGGTAGGCCGCCAGTTATATACTTGGATG
CCTGCATTTTTATCTCGATGATCACGAGAGAGCAGCGCCGTGGGGATGAGGCGTCTCAAGTTGCAGGGCTCGTTCCAGCAATCGAGCGACGTGAGATAAT
TCCGGTTACCTCGGCTCTAACTCGAAACGAGGTGCTGGAATGCACCTTGGACGCTCAACAGAAAAACATACTGCGTAAGCTGCTCAATCCGCCGAAGGTT
CAGGTCAAGGATGTAAGCTCACCCATCTTGGATCTTAGCCAGGAGATAAGAGAATACTATCAGGCAATGAAGATTGCCAGAACTACTAACCTGCCGACGG
TCGAGACCCCTGATGCAATTCATTTGGCGACAGCAATATATTATGACTGCGATATGCTATTCACATTTGACGAGGCTGATCGAGAAACAGGTCGGTTGCC
AAAGCGAGGGCTTATCCCACTGAGTGGGATTGTTGCCGGTCGATATCCGATGGTGATTTGCAAGCCTACCGTCAGAGCGCCGGGTCTGTCCGTATGAAGA
ACGACATCCCCACCAAGCCCAAGCCTACCAAGCTCGGCGCTGAGAAGCTGACGCCCGAAGAGCAGAAGCGCCGCTTCATCGAAGCCGCCCGCGAGGCTGG
GGCCAGCGAGAACGAAGCGGACTTAGATGCGGCGTTGAAGCGGATCGCGAAGGCGAAGCAGGAGAGGCTGTAAGCCCCCCCCCGCCCCGCAGAACGCAGG
CTACTTCGCTTTGTCGGCGATGCCCTTCAGGCCAGCCTCGTAAACGCCCGCGATGGCCTCTTTTGCCTTGTCGTCGGGTGCACCCTTAGCCTTGAAGTTG
CCGGTCCAAGTGACTTTGGAGCCGCTGCCATCCTTCTCGACCATGATCGTGGACTTATAGTCCTCAACCGGCAGAGGCCCCGAGAGGATCGTGTACGTGT
AATCCATCTTTTTGTCGTCGCGGGATTGCTCCTGCTCCACGATGGTGCCGCCGCCCTTCAGTGACAGGGTGCGTTCTTCCTTGTCGCCCTTCTTGGATAG
TGCGCACTTCTCCACAACGGGGTGCCAGTCGCCGATGCCGCAGAAGCCACCGATGGTCTTCCAAACCTTGTCCGGCGAGGCCGCGACGGTCGTTGTCTTC
GTCACCTCAAGGGCAAAGGCGGGGGTAGTAACCAGAGCCATGAGAGCCACAGCCGGCAGGGCAATCTTCAACATTTAGCGTTTCCTCAGCAGGGTTCTTG
TAAGCCCCGGAGATGGGGTGGCCTGCTATATAGCGCGCAATCGAAAAGCGGCCATTGCCGGTCGCGTATGTGCAAACGGTATAATTGCC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa641005+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSALSAAFFHDEAAAFAKLESLIWPEGPVCPHCGGMGRITNVKGGRMGLRRCGDCKKQFTVTVGTVFESSHVKLHLWLQAAHLLASSKKGFSAHQLHRTL
GVTYKTAWFMFHRLREAMRDGALAPMGGLDGPAGGAGIVEADETFIGREPGKPKKRAYHHKMKVLSLVDRDTKQVRSVVVDDLKPDTVKPILAANIAKEA
SLFTDEAGHYVKLGKDFIEHQITSHGKGEYVRGIVHTNTVEGYFSVFKRGMKGVYQHCGKQHLHRYLAEFDFRYNNRAKLGVGDVARTERALYGIIGKRL
TYRSANRPQAING

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
780 bp259 aa9981777+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDESRISLTIVPSGGDEGSVLVSDFLKQVDALKKLVGYASRTNTVEARIVGLSMNSPASVEIEAFNASNNAAVPVGAFFHDVYNVVEKAATPINLEREVF
DTIKDFASVVGKGVNSTIIVAAGNEIKFDIIAKDRIDGIFGQDYSRHGTADGMLEAVNIHGKINNCALYPLVGPKRISCRFEEHLFKKIKPALGKYVMIE
GILKYRWREKFPHAADIHKIDVLPSWDEQPSFEDILGMASNATHGEASEEFVKARRYGW

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
474 bp157 aa25012974-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MLKIALPAVALMALVTTPAFALEVTKTTTVAASPDKVWKTIGGFCGIGDWHPVVEKCALSKKGDKEERTLSLKGGGTIVEQEQSRDDKKMDYTYTILSGP
LPVEDYKSTIMVEKDGSGSKVTWTGNFKAKGAPDDKAKEAIAGVYEAGLKGIADKAK

 

Blast result :
Comments
ISMpo2 is 70% aa similar to ISNisp2.
The second and the third ORFs are passengers genes.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.