ISMma21

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 720 bp

Ends


Left end : TACTAAGGGAGCGCAGAGGGTCACGAATACCCCATCCTTTAGGGTGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCACTTTAAATATCTTAATCCTT II struct. : Yes
Right end : AGCAAAGAAAACTTGATGATTTCTAACTACCAAAACAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGGGTGGCCGCCCGCAATTTGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTTACCTGTATTTATTTTCCAGGGTCTTTTTTCTTTTGAT
TGGAAATATTTTTATTTTTAGAATTCCACAATTTATtgat
GTGTTCTTCATTAATTTTTGCTTTTGTCTCAAGCTTtgat
TTATTCTTATTTTATTCTTTGTCTGATTTATCTTTTTGAT

DNA sequence

TACTAAGGGAGCGCAGAGGGTCACGAATACCCCATCCTTTAGGGTGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCACTTTAAATATCTTAATCCTT
GCTTTTTTTGTAAAATAAGCTTGTTTTTGGCACCATAGCCACCGATGGTGCCATCCATCTATGGCTAGGATGTGATATCAGTTGGAATTACACAGTTTTA
GCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTGCCTAAGTATCGATACAGTATATTCTACAATAAGCGAATTAAAAAAGATTGCGAGTTAAT
TTTCAGTAACATTTGCACTAAAAATGGCTACAAAATACATGCAATGGAAGTAGTAGACAATCATGTTCACTTGTTTCTGGAATTCCATCCAAGTAATTCT
CTGTCAGAGGTAATTCAATATTTGAAAGGAGGCAGTTCTTACAGACTGTTCAAGCTCCATCCTGATCTTAAAAAACAGTATTGGGGTGGAAGTCTATGGT
CAAATGGAAAGTTCTATCGATCCGTTGGAAACGTAACTGCTGATACAATTAAGCATTACATTAAAGAATCGCAAGGAAAACCGAGTGAAGAGTCTCAATT
GTATAGATTCATGAGATCCGAGCAAAGAAAACTTGATGATTTCTAACTACCAAAACAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGG
GTGGCCGCCCGCAATTTGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
465 bp154 aa181645+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MELHSFSHGYGQITYHIVLVPKYRYSIFYNKRIKKDCELIFSNICTKNGYKIHAMEVVDNHVHLFLEFHPSNSLSEVIQYLKGGSSYRLFKLHPDLKKQY
WGGSLWSNGKFYRSVGNVTADTIKHYIKESQGKPSEESQLYRFMRSEQRKLDDF

 

Blast result :
Comments
ISMma21 is 59% aa similar to ISW1.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461