ISMbu5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1696 bp
Ends
IR Length : 18/19
IRL : GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTAT
IRR : GTAACTATTCAGCCTACCTATAGTCAATCCTATATGACCAACCTTTACAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TAAAAATATT | TATAAAGGTA | 0 | |
| TTTTTATTAA | TATTTATT | TTAGTTTTCT | 8 |
| ACTTTATTTT | AAAAATAT | ATCATAACAT | 8 |
| AATTTATATT | AAAGGATA | TATCAATATT | 8 |
| AGGAATCATT | GAATAAAG | TAGGATTAGT | 8 |
| AAGTGAGTTA | GAAAAAGG | TAGCTCATTC | 8 |
| GTGAATATTA | ATAATTTC | TTTGATATGG | 8 |
| TTTATTTATT | TATTTATT | TATTTATTTA | 8 |
| AAAAGAAGAA | GATTTATTTA | 0 |
DNA sequence
GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTATTTCATCTTCTGACATGGATTTTTACGAAAAAAGTAAGTAGTAGCATTCTA
TTTAAGTTCACACCCAAAAAATCAATTGGTTTTGCCAAACAGGAGGTGAATGAACACGAAACGCAAAGAAATCCTAGCAGTTTATGAACAAGGTCCCGAA
GCAGTTGTCACTCTTGTCACTACATTGTACGACATCATTGCTGAACAACAAAGGATCATAGAACTACAAGCTGCCAGAATAACCGAACTCGAAGAACGAG
TTAAAAAATTGGAAGAGCAACTCAAAAAAAACAGCCGAAACAGCAGTAAACCACCTTCAACTGATGTTTTTATTAATGAGAAACCAAAAACAAAAAGCAG
ACGAAAAAAGAGTGGAAAGAAACCAGGTGGTCAGAAAGACCATCCTGGAACTACTCTCAGAATGGTAGATGTTCCTGACGAAGTTATAATTCACAAAGTA
CACAAATGTAGCAATTGTGAAAGATCGCTTGAAGATATAGAAGTTAAAGATCATGAAAAAAGGCAAGTATTTGACATACCTCCCATTAAGCTTCAAGTAA
CAGAACATCGTGCTGAAATCAAGTCCTGTCCTCACTGCGGTTGCAAGAACAAAGCTACTTTTTCAGAAAAGGTTAAACAACCCACGCAATATGGCTTACG
TCTTGCATCATTAGCAGTCTACTTACATGATTATCAATTACTTCCTTATGAACGCAGCTGTGAATTGCGAGCTGATGTTTGTGGATGTGAAATAAGTCCC
GCTACTTTGGCCAGGGCAGAAAAGACATGTTTTGAAAAACTTGAAGATTTCGAACAGCAGATCAAGAACTTCTTAATAGAATCTCCTGTGATAAATTGTG
ATGAAACTGGTATGAGGATAGAAGGAAAACGACAGTGGTTACATGTTGCTTCTACAAACAAAATGACATGTTATTATCCTCATCAAAAAAGAGGCTCTGA
AGCAATGAATGTGATGGGAATCTTACCAAATTTTAATGGTACAGTAGTTCATGATTTCTGGAAATCATATTACAAATATGATTGTGATCATTCGATCTGT
AATGCTCATCTATTGCGAGAATTAACAAGTGTAAGCGAGAACGATGATCAATTGTGGTCAAAAGCTATGAATATTCTACTTATTGATGTCAAAAAGTCAG
TTGACCAGATCCGAGAAATGTCTGGTTGTATGAAACCAGAGAGAATTAAAGAGTTTGAAGATTGGTACGGCCAGATTATTCATATTGGGATAGAAGAAAA
TCCTCAACTTCAAGCCAAATCAAAGAAGCGAGGAAGAACTAAACAAACCACAGCAAAAAATCTGCTGGATCGGTTTATTGGTTATAAAAATGATATTCTC
AGGTTTATGCATGATCTAAAAGTTCCATTTGAGAATAATCTTGCAGAAAGGGATGTGAGAATGATGAAAGTACAGCAGAAGATATCGGGTACATTCCGAA
GTATGCAAGGAGCATTAATTTTCTCGCGGGTAAGAAGTTACATTTCTACTGTTAAGAAGAATCAGGTTCCTGTGATGGATGCAATTCGAAATGCAATTGC
TGGAATGCCATTTATTCCAACAATTGTTTGAGATTCTAATTTTTTTGTGTAAAGGTTGGTCATATAGGATTGACTATAGGTAGGCTGAATAGTTAC
TTTAAGTTCACACCCAAAAAATCAATTGGTTTTGCCAAACAGGAGGTGAATGAACACGAAACGCAAAGAAATCCTAGCAGTTTATGAACAAGGTCCCGAA
GCAGTTGTCACTCTTGTCACTACATTGTACGACATCATTGCTGAACAACAAAGGATCATAGAACTACAAGCTGCCAGAATAACCGAACTCGAAGAACGAG
TTAAAAAATTGGAAGAGCAACTCAAAAAAAACAGCCGAAACAGCAGTAAACCACCTTCAACTGATGTTTTTATTAATGAGAAACCAAAAACAAAAAGCAG
ACGAAAAAAGAGTGGAAAGAAACCAGGTGGTCAGAAAGACCATCCTGGAACTACTCTCAGAATGGTAGATGTTCCTGACGAAGTTATAATTCACAAAGTA
CACAAATGTAGCAATTGTGAAAGATCGCTTGAAGATATAGAAGTTAAAGATCATGAAAAAAGGCAAGTATTTGACATACCTCCCATTAAGCTTCAAGTAA
CAGAACATCGTGCTGAAATCAAGTCCTGTCCTCACTGCGGTTGCAAGAACAAAGCTACTTTTTCAGAAAAGGTTAAACAACCCACGCAATATGGCTTACG
TCTTGCATCATTAGCAGTCTACTTACATGATTATCAATTACTTCCTTATGAACGCAGCTGTGAATTGCGAGCTGATGTTTGTGGATGTGAAATAAGTCCC
GCTACTTTGGCCAGGGCAGAAAAGACATGTTTTGAAAAACTTGAAGATTTCGAACAGCAGATCAAGAACTTCTTAATAGAATCTCCTGTGATAAATTGTG
ATGAAACTGGTATGAGGATAGAAGGAAAACGACAGTGGTTACATGTTGCTTCTACAAACAAAATGACATGTTATTATCCTCATCAAAAAAGAGGCTCTGA
AGCAATGAATGTGATGGGAATCTTACCAAATTTTAATGGTACAGTAGTTCATGATTTCTGGAAATCATATTACAAATATGATTGTGATCATTCGATCTGT
AATGCTCATCTATTGCGAGAATTAACAAGTGTAAGCGAGAACGATGATCAATTGTGGTCAAAAGCTATGAATATTCTACTTATTGATGTCAAAAAGTCAG
TTGACCAGATCCGAGAAATGTCTGGTTGTATGAAACCAGAGAGAATTAAAGAGTTTGAAGATTGGTACGGCCAGATTATTCATATTGGGATAGAAGAAAA
TCCTCAACTTCAAGCCAAATCAAAGAAGCGAGGAAGAACTAAACAAACCACAGCAAAAAATCTGCTGGATCGGTTTATTGGTTATAAAAATGATATTCTC
AGGTTTATGCATGATCTAAAAGTTCCATTTGAGAATAATCTTGCAGAAAGGGATGTGAGAATGATGAAAGTACAGCAGAAGATATCGGGTACATTCCGAA
GTATGCAAGGAGCATTAATTTTCTCGCGGGTAAGAAGTTACATTTCTACTGTTAAGAAGAATCAGGTTCCTGTGATGGATGCAATTCGAAATGCAATTGC
TGGAATGCCATTTATTCCAACAATTGTTTGAGATTCTAATTTTTTTGTGTAAAGGTTGGTCATATAGGATTGACTATAGGTAGGCTGAATAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1482 bp | 493 aa | 150 | 1631 | + | No |
Chemistry : DDE
ORF sequence :
MNTKRKEILAVYEQGPEAVVTLVTTLYDIIAEQQRIIELQAARITELEERVKKLEEQLKKNSRNSSKPPSTDVFINEKPKTKSRRKKSGKKPGGQKDHPG
TTLRMVDVPDEVIIHKVHKCSNCERSLEDIEVKDHEKRQVFDIPPIKLQVTEHRAEIKSCPHCGCKNKATFSEKVKQPTQYGLRLASLAVYLHDYQLLPY
ERSCELRADVCGCEISPATLARAEKTCFEKLEDFEQQIKNFLIESPVINCDETGMRIEGKRQWLHVASTNKMTCYYPHQKRGSEAMNVMGILPNFNGTVV
HDFWKSYYKYDCDHSICNAHLLRELTSVSENDDQLWSKAMNILLIDVKKSVDQIREMSGCMKPERIKEFEDWYGQIIHIGIEENPQLQAKSKKRGRTKQT
TAKNLLDRFIGYKNDILRFMHDLKVPFENNLAERDVRMMKVQQKISGTFRSMQGALIFSRVRSYISTVKKNQVPVMDAIRNAIAGMPFIPTIV
TTLRMVDVPDEVIIHKVHKCSNCERSLEDIEVKDHEKRQVFDIPPIKLQVTEHRAEIKSCPHCGCKNKATFSEKVKQPTQYGLRLASLAVYLHDYQLLPY
ERSCELRADVCGCEISPATLARAEKTCFEKLEDFEQQIKNFLIESPVINCDETGMRIEGKRQWLHVASTNKMTCYYPHQKRGSEAMNVMGILPNFNGTVV
HDFWKSYYKYDCDHSICNAHLLRELTSVSENDDQLWSKAMNILLIDVKKSVDQIREMSGCMKPERIKEFEDWYGQIIHIGIEENPQLQAKSKKRGRTKQT
TAKNLLDRFIGYKNDILRFMHDLKVPFENNLAERDVRMMKVQQKISGTFRSMQGALIFSRVRSYISTVKKNQVPVMDAIRNAIAGMPFIPTIV
Blast result :
Comments
ISMbu5 is 95% aa similar to ISMbu12.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.