ISMba16

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 722 bp

Ends


Left end : TACTATGGGAGCGCAGAGGGTCACGAATACCCTGACCTTTAGGTCGGGGATGAAGTGAACCCTCGCTGGCTGTTTTATATTCGCATAACTGTTTCAATCA II struct. : Yes
Right end : GGCAACGTAGAATTAATGAGTTCTAAGTACCAAAATAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGGGTGGCCGCACGCAATTTGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCTTTTATGTAATTTTATTTGGGCTACAATTAGTATTTCAtgat
AAAGCTTATAGCTGTTTATTTTAATTCAAATTTAACTTTTTtgat

DNA sequence

TACTATGGGAGCGCAGAGGGTCACGAATACCCTGACCTTTAGGTCGGGGATGAAGTGAACCCTCGCTGGCTGTTTTATATTCGCATAACTGTTTCAATCA
TCAGTTCTTTGTAAAATAAAGTTTTTTTTGGCACCATAACCACAGGTGGTGCCAGCCACCTATGGCTAGGATGTGATATAATGTTGGAACTACGTAGTTT
TAGCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTACCTAAATATCGATACAGTATATTCTACAACAAGCGGATTAAAAAGGATTGCGAGTTG
ATTCTCAGCAGTATTTGCATGGAAAAAGGCTACAAAATTCATGCAATGGAAGTTGTAGATGATCATGTTCACTTGTTTCTAGAGTTTCATCCAAGTACTT
CTCTATCAGAGGTAATTCAATACTTGAAAGGAGGAAGTTCTTACAGACTTTTCAAGCTTCATCCTGAAATGAGACACCAGTATTGGAGTGGAAGTCTATG
GTCAAGTGGAAAGTTCTATCGATCTGTTGGGAATGTAACTGCTGACACAATCAAGCATTATATTAAGGAATCGCAGGGAAAAACGAAAACAGAAGCTCAA
TCACAGAGGTTAAAAAAATCCGGGCAACGTAGAATTAATGAGTTCTAAGTACCAAAATAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTG
GGGTGGCCGCACGCAATTTGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
468 bp155 aa181648+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MLELRSFSHGYGQITYHIVLVPKYRYSIFYNKRIKKDCELILSSICMEKGYKIHAMEVVDDHVHLFLEFHPSTSLSEVIQYLKGGSSYRLFKLHPEMRHQ
YWSGSLWSSGKFYRSVGNVTADTIKHYIKESQGKTKTEAQSQRLKKSGQRRINEF

 

Blast result :
Comments
ISMba16 is 55% aa similar to ISEnfa200.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank