ISKpn4

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EF408254 ND Klebsiella pneumoniae
Klebsiella pneumoniae
DNA section
IS Length : 1377 bp

Ends


IR Length : 13

IRL : ggctgtaATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACCGAGGTG
IRR : ----catATGGACTCTCCCCACAAGCAGTGAGGAAAGCTTTTTTCGATCC

Insertion site


Left flankDirect repeatRight flankDR Length
ATCTAACAATTCATTCAAGCCGACGC0

DNA sequence

GGCTGTAATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACCGAGGTGTCTGTTTGCTGGGAGAGTGGCAATGAAGCGCATAGCAGTCGATTTGGCCA
AGTCCGTTTACCAGGTTGCCGAAAGTATCCATGTCGGCCGGGTGGATCGTCGCAGACGGCTCGATCCGGAGGCATTCCGGCGATATGTACAGGAGCAGCC
GGAGCCTGTCGAGTGGGTGATGGAAGCCTGCGGTACGGCGCATTACTGGGGGCGGGTGGCGCAGGCGCTGGGTCATCGGGTGGTGCTGTTGCACCCGCGC
TACGTACGGCCGTATCGCCGGCGCAACAAGACCGACCGTAACGACTGCGATGCCATCCTCGAAGCGGCGCGTTGTGCCGACATGCACCCGGTGCCGGTGA
AAAGCCATGAGCAGCAGCAAGTGCAGCAGCTGCATAACCTGCGCGAGGCCTGGAAAAAGACCCGGGTGCAGCACATCAACTTGCTGCGCGGCATCCTGCG
CGAACTGGGCGTGGCGGCGCCGAGTAGCACCCAGGCCTTTCTACGCCAGGCCTGCGAGCTGATCGAACGTGCCGAAGTTTGCGCCCTGCGCGGCGCGCTG
CAGATGGTGCTGGCCGAAATCAGCCTGTGCGAACAGGCGATGCGCGACAGCGAAGAACAACTGGCGCGCTGGCATGCCGACGATGACATCGTGCACAAAC
TCGACGAAGTCAGCGGTATCGGGCTGCTCACCGCCAGCGCCCTGAAAACTGCCGTCGGCAAACCCGAACGCTTCGCCAGCGGCCGACACCTGAGCGCCTG
GCTCGGCATGACCCCCAACGAATACAGCAGCGGCGAACGGCGCAGACTCGGGTGCATCAGCTGCAAAGGCAACACCTACGTGCGCACCCTGCTGATCCAC
GGCGCCCGCGCGGCGCTGCTGGCCGCCAAGCGCTGCCAGACGCGAACGCCCGAGCGCCTGACCCAGTTGCAGCGCTGGTCCCTGCAAACGGCCGAACGTA
TCGGCCACAACAAGGCGGCCGTGGCGTTAGCGAACAAACTGGTGAGGATCTGCTGGGCAGTGTGGTGCCATGAGCGACGTTTCAGCGGCGACTGGCAGAG
TGCAAGGCCCGCCTGACGGCGGGGGTAATCAGCAAGACGAGGTGAACTTCCTGCGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGC
GGAACAAGGCCGATAACAATCATGATCCTCGGGATCGTTTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCCGGGCACTAGCCCACGCAAGGC
CGGATATGCGATTGCAACCGCGCTGACGACAGGATCGAAAAAAGCTTTCCTCACTGCTTGTGGGGAGAGTCCATATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa731116+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKRIAVDLAKSVYQVAESIHVGRVDRRRRLDPEAFRRYVQEQPEPVEWVMEACGTAHYWGRVAQALGHRVVLLHPRYVRPYRRRNKTDRNDCDAILEAAR
CADMHPVPVKSHEQQQVQQLHNLREAWKKTRVQHINLLRGILRELGVAAPSSTQAFLRQACELIERAEVCALRGALQMVLAEISLCEQAMRDSEEQLARW
HADDDIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPNEYSSGERRRLGCISCKGNTYVRTLLIHGARAALLAAKRCQTRTPERLTQLQ
RWSLQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGDWQSARPA

 

Blast result :
Comments
References
1] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Post,V. and Hall, R.M. (2007) unpublished