ISKpn4
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EF408254 | ND | Klebsiella pneumoniae | Klebsiella pneumoniae |
DNA section
IS Length : 1377 bp
Ends
IR Length : 13
IRL : ggctgtaATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACCGAGGTG
IRR : ----catATGGACTCTCCCCACAAGCAGTGAGGAAAGCTTTTTTCGATCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCTAACAATTCA | TTCAAGCCGACGC | 0 |
DNA sequence
GGCTGTAATGGACTCTCCCCGCACCGCGTTTCTTCTATAAGACCGAGGTGTCTGTTTGCTGGGAGAGTGGCAATGAAGCGCATAGCAGTCGATTTGGCCA
AGTCCGTTTACCAGGTTGCCGAAAGTATCCATGTCGGCCGGGTGGATCGTCGCAGACGGCTCGATCCGGAGGCATTCCGGCGATATGTACAGGAGCAGCC
GGAGCCTGTCGAGTGGGTGATGGAAGCCTGCGGTACGGCGCATTACTGGGGGCGGGTGGCGCAGGCGCTGGGTCATCGGGTGGTGCTGTTGCACCCGCGC
TACGTACGGCCGTATCGCCGGCGCAACAAGACCGACCGTAACGACTGCGATGCCATCCTCGAAGCGGCGCGTTGTGCCGACATGCACCCGGTGCCGGTGA
AAAGCCATGAGCAGCAGCAAGTGCAGCAGCTGCATAACCTGCGCGAGGCCTGGAAAAAGACCCGGGTGCAGCACATCAACTTGCTGCGCGGCATCCTGCG
CGAACTGGGCGTGGCGGCGCCGAGTAGCACCCAGGCCTTTCTACGCCAGGCCTGCGAGCTGATCGAACGTGCCGAAGTTTGCGCCCTGCGCGGCGCGCTG
CAGATGGTGCTGGCCGAAATCAGCCTGTGCGAACAGGCGATGCGCGACAGCGAAGAACAACTGGCGCGCTGGCATGCCGACGATGACATCGTGCACAAAC
TCGACGAAGTCAGCGGTATCGGGCTGCTCACCGCCAGCGCCCTGAAAACTGCCGTCGGCAAACCCGAACGCTTCGCCAGCGGCCGACACCTGAGCGCCTG
GCTCGGCATGACCCCCAACGAATACAGCAGCGGCGAACGGCGCAGACTCGGGTGCATCAGCTGCAAAGGCAACACCTACGTGCGCACCCTGCTGATCCAC
GGCGCCCGCGCGGCGCTGCTGGCCGCCAAGCGCTGCCAGACGCGAACGCCCGAGCGCCTGACCCAGTTGCAGCGCTGGTCCCTGCAAACGGCCGAACGTA
TCGGCCACAACAAGGCGGCCGTGGCGTTAGCGAACAAACTGGTGAGGATCTGCTGGGCAGTGTGGTGCCATGAGCGACGTTTCAGCGGCGACTGGCAGAG
TGCAAGGCCCGCCTGACGGCGGGGGTAATCAGCAAGACGAGGTGAACTTCCTGCGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGC
GGAACAAGGCCGATAACAATCATGATCCTCGGGATCGTTTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCCGGGCACTAGCCCACGCAAGGC
CGGATATGCGATTGCAACCGCGCTGACGACAGGATCGAAAAAAGCTTTCCTCACTGCTTGTGGGGAGAGTCCATATG
AGTCCGTTTACCAGGTTGCCGAAAGTATCCATGTCGGCCGGGTGGATCGTCGCAGACGGCTCGATCCGGAGGCATTCCGGCGATATGTACAGGAGCAGCC
GGAGCCTGTCGAGTGGGTGATGGAAGCCTGCGGTACGGCGCATTACTGGGGGCGGGTGGCGCAGGCGCTGGGTCATCGGGTGGTGCTGTTGCACCCGCGC
TACGTACGGCCGTATCGCCGGCGCAACAAGACCGACCGTAACGACTGCGATGCCATCCTCGAAGCGGCGCGTTGTGCCGACATGCACCCGGTGCCGGTGA
AAAGCCATGAGCAGCAGCAAGTGCAGCAGCTGCATAACCTGCGCGAGGCCTGGAAAAAGACCCGGGTGCAGCACATCAACTTGCTGCGCGGCATCCTGCG
CGAACTGGGCGTGGCGGCGCCGAGTAGCACCCAGGCCTTTCTACGCCAGGCCTGCGAGCTGATCGAACGTGCCGAAGTTTGCGCCCTGCGCGGCGCGCTG
CAGATGGTGCTGGCCGAAATCAGCCTGTGCGAACAGGCGATGCGCGACAGCGAAGAACAACTGGCGCGCTGGCATGCCGACGATGACATCGTGCACAAAC
TCGACGAAGTCAGCGGTATCGGGCTGCTCACCGCCAGCGCCCTGAAAACTGCCGTCGGCAAACCCGAACGCTTCGCCAGCGGCCGACACCTGAGCGCCTG
GCTCGGCATGACCCCCAACGAATACAGCAGCGGCGAACGGCGCAGACTCGGGTGCATCAGCTGCAAAGGCAACACCTACGTGCGCACCCTGCTGATCCAC
GGCGCCCGCGCGGCGCTGCTGGCCGCCAAGCGCTGCCAGACGCGAACGCCCGAGCGCCTGACCCAGTTGCAGCGCTGGTCCCTGCAAACGGCCGAACGTA
TCGGCCACAACAAGGCGGCCGTGGCGTTAGCGAACAAACTGGTGAGGATCTGCTGGGCAGTGTGGTGCCATGAGCGACGTTTCAGCGGCGACTGGCAGAG
TGCAAGGCCCGCCTGACGGCGGGGGTAATCAGCAAGACGAGGTGAACTTCCTGCGGTTGTGGTGAGAAGCGAGACTGTCGGAACAGGCGAGTCCTGCAGC
GGAACAAGGCCGATAACAATCATGATCCTCGGGATCGTTTGAACGCTTGGCCCCCGCTGCGCGAACTACAGAATGGCCCGGGCACTAGCCCACGCAAGGC
CGGATATGCGATTGCAACCGCGCTGACGACAGGATCGAAAAAAGCTTTCCTCACTGCTTGTGGGGAGAGTCCATATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 73 | 1116 | + | No |
Chemistry : DEDD
ORF sequence :
MKRIAVDLAKSVYQVAESIHVGRVDRRRRLDPEAFRRYVQEQPEPVEWVMEACGTAHYWGRVAQALGHRVVLLHPRYVRPYRRRNKTDRNDCDAILEAAR
CADMHPVPVKSHEQQQVQQLHNLREAWKKTRVQHINLLRGILRELGVAAPSSTQAFLRQACELIERAEVCALRGALQMVLAEISLCEQAMRDSEEQLARW
HADDDIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPNEYSSGERRRLGCISCKGNTYVRTLLIHGARAALLAAKRCQTRTPERLTQLQ
RWSLQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGDWQSARPA
CADMHPVPVKSHEQQQVQQLHNLREAWKKTRVQHINLLRGILRELGVAAPSSTQAFLRQACELIERAEVCALRGALQMVLAEISLCEQAMRDSEEQLARW
HADDDIVHKLDEVSGIGLLTASALKTAVGKPERFASGRHLSAWLGMTPNEYSSGERRRLGCISCKGNTYVRTLLIHGARAALLAAKRCQTRTPERLTQLQ
RWSLQTAERIGHNKAAVALANKLVRICWAVWCHERRFSGDWQSARPA
Blast result :
Comments
References
1] Partridge and Hall (2003) J. Bacteriol. 185, 6371-6384
2] Post,V. and Hall, R.M. (2007) unpublished
2] Post,V. and Hall, R.M. (2007) unpublished