ISHp608

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s) IS608
Accession numberTranspositionOriginHost
AF357224 Y Helicobacter pylori
Helicobacter pylori India77
Helicobacter pylori PeruCan18B
Helicobacter pylori PeruSJM92
Helicobacter pylori Shi170 MsrA
Helicobacter pylori Cuz20
Helicobacter pylori AlaskaP20
Helicobacter pylori PeCan4
Helicobacter pylori Lith5
Helicobacter pylori India49
Helicobacter pylori B8
Helicobacter pylori HUP-B43
DNA section
IS Length : 1833 bp

Ends


Left end : CAAAAACTAACGCCTTAAAGCCCCTAGCTTTTAGCTATGGGGATAAAAGGCGAAACGCCTTTAGGCGTGCCAATATGAAATAGGGGTATCAGAGTCAATA II struct. : Yes
Right end : AGAATTTGTAAGACCTACTTGTTAGGCAGAATTTGCTTGATACCAAAGTCCCATAGCTTTAGCTAGAATCCCCTAGCTTTAGCTATGGGGAGTATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATCAAAATACTTACAAAGTGTTAGTCAA

DNA sequence

CAAAAACTAACGCCTTAAAGCCCCTAGCTTTTAGCTATGGGGATAAAAGGCGAAACGCCTTTAGGCGTGCCAATATGAAATAGGGGTATCAGAGTCAATA
TCATGCACAAAAATAAGGGTAATGTTATGAATATCTTGTATTAGTTATTTTTTTTATATATAATACAAATATGAGTAACGCTGTTTTATATAAAAACAAC
CACAACATTGTCTATTCTTGCAAATACCATATCGTGTGGTGTCCTAAATACAGGCGTAAGGTATTAGTGGGAGCTGTAGAAATGAGATTGAAAGAAATCA
TTCAAGAAGTGGCTAAAGAATTAAGAGTAGAGATCATAGAGATGCAAACCGATAAAGACCATATCCACATTTTAGCTGATGTTGATCCAAGCTTTGGAGT
GATGAAGTTCATTAAAACCGCTAAAGGTCGTAGCAGTAGGATATTAAGACAAGAATTTAACCACTTAAAAACAAAACTACCTACTTTATGGACCAATTCT
TGTTTCATTTCAACAGTGGGGGGTGCGCCTTTGAATGTTGTCAAACAATACATTGAAAACCAACAAAACAGCAACCGCCCTAAGCAAAAAGAAAAATGGA
AAAATTATGTTGATAACCTACAAACAAAAGCTCTATAAGAACGATAAGAATAGGCGTATAGACACACTATTAAGGCGTTATGGTGCGCTGTATAATCATT
GTATCGCCTTGCACAAACGCTATTACAGGCTTTTCAAAAAGTATCTAAAACTTTACGATCTGCAAAAACACATCACCAAGCTAAAAAAGACCCATCGTTA
TGCTTTTTTAAAAACACTAGGCTCACAAACCATGCAAGATTTGACTGAGAGGATAGACAAAGCGTTCAAAAAATTCTTTAACAAAAAAGCCAAACTGCCA
CGATTCAAAAAAGTAGCCAACTACAAGTCTTTCACTTTTAAGAGTAAGATTGACAAAAAGACAGGATTGAATAAGGGAGTGGGGTTTGCGATAAAAGACA
ATGTTGTTTCTTTTAATGGTTATAGCTACAAGTTTATCAAAACTTATGCGTTTATAGGGAAAGTGAAAACTTTAACCATTAAGAGAGACAACACAGGCGA
TTATTTCTTGTGTCTAGTCTGTGAATTAGAAAACCATCCTAACAAGCAAACCGCATGCGATAAGAGCGTGGGTTTTGACTTTGGGTTAAAGACTTTTTTG
ACAGGGTCTGATCACACTAAGATAGAATCGCCTTTGTCTTTCTCTAAATACTTGCCTTTAATCAAACGACTTAGTAAAAACCTTAGCAAGAAAGTTAAGG
GTTCTAATAACTTCAAGAAAGCTAAAAAGAAATTGACTCAGTTGCACCAAAAAATCAAATATTTAAGGACCGATTTCTTCCATAAATTGGCTTTGAAGCT
GAGCAGAGAATACCAAACGATCTTCATTGAAGACTTGAACATGAAAGCCATGCAAAAACTTTGGGGCAGAAAGGTGAGCGATTTAGCTTTTAGCGAGTTT
GTGAAGATCCTTGAAAACAAGGCTAATGTCGTTAAAATTGATAGATTTTATCCCAGTTCTAAGACTTGTTCTAATTGCTTGTTTGTCAATGAAGAAATTA
ATAAAGATTTCAGAAAAATAGGCAAGACAGATAAAGAAAGAGAATACCACTGCAAATATTGCGGATTGGAACTAGACAGGGATTTAAATGCGGCTATCAA
CATTCATAGGGTTGGGGCATCAACCCTTGGGGTAGAATTTGTAAGACCTACTTGTTAGGCAGAATTTGCTTGATACCAAAGTCCCATAGCTTTAGCTAGA
ATCCCCTAGCTTTAGCTATGGGGAGTATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
468 bp155 aa171638+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSNAVLYKNNHNIVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADVDPSFGVMKFIKTAKGRSSRILRQEFNHLK
TKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKNYVDNLQTKAL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1152 bp383 aa6071758+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLITYKQKLYKNDKNRRIDTLLRRYGALYNHCIALHKRYYRLFKKYLKLYDLQKHITKLKKTHRYAFLKTLGSQTMQDLTERIDKAFKKFFNKKAKLPRF
KKVANYKSFTFKSKIDKKTGLNKGVGFAIKDNVVSFNGYSYKFIKTYAFIGKVKTLTIKRDNTGDYFLCLVCELENHPNKQTACDKSVGFDFGLKTFLTG
SDHTKIESPLSFSKYLPLIKRLSKNLSKKVKGSNNFKKAKKKLTQLHQKIKYLRTDFFHKLALKLSREYQTIFIEDLNMKAMQKLWGRKVSDLAFSEFVK
ILENKANVVKIDRFYPSSKTCSNCLFVNEEINKDFRKIGKTDKEREYHCKYCGLELDRDLNAAINIHRVGASTLGVEFVRPTC

 

Blast result :
Comments
ORF1 is 54% aa similar to ISW1 (IS200 family). This ORF is essential for transposition in Escherichia coli.
ORF2 is 47% aa similar to IS1341 (IS605 family), not required for transposition in Escherichia coli.
Additional Accession Number : AF357223 ; AF411947 ; AF411946 ; AF411945 ; AF411944 ; AF411943 ; AF411942 ; AF411941 ; AF411940 ; AF411939
References
1] Kersulyte,D., Velapatino,B., Gilman,R.H. and Berg,D.E. (2001)Direct Submission GenBank