ISGob4

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGO00000000 ND Gemmata obscuriglobus
Gemmata obscuriglobus UQM 2246
DNA section
IS Length : 1576 bp

Ends


IR Length : 14/15

IRL : GTAAGCGTTCATGGGGGTGCGCCACCCGCTTTTGCCCGTCATTTTAGCCC
IRR : GTAAGCGTTCACGGGTGATGCGGCAGTGTATCAACAGTTGGCGAGTAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCGTCAGTCCACTTTTTTTAGGGTCC8
GAACCGGATTCTTCCTTTTCTTGCTGAA8
ACTGGGAGCTAAGATTTGAACACAATCC8
TAAGTTTAAAGAATTGCCATATAGTGTA8
CCCGGGGGATt/cCCATCGCTGTCTACGTC10
TGGCCTTATCa/cAGTAATCGCTTACGATT10

DNA sequence

GTAAGCGTTCATGGGGGTGCGCCACCCGCTTTTGCCCGTCATTTTAGCCCGTTTGGATACGCGGTTGCCACAAGCGGGCATGTTCCGTAATCGAGCAGAC
GTCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACTTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACTGCTCTGG
TGGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCAGAGCTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACTGGCCCCGCC
CAAGGCCCCTTCGGGGAAGCGTCGGGGCGGGCAACCGGGGCATCCCAAAGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCC
GTGTGCCGGGACTGCTCGCGGTCGCTGGCCGGGGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGT
ATCGGTGCCACCGGCTCCGGTGCCCCCACTGCGGCACGACCACGGTGCCCGCGGTGCCGTCGGAGGCGCGCACCGGATACGGCCCCCGGGCGCAGGCGGT
GGCCGCGCTTCTCACCGGCTCGTGCCGTCTGGGCAAGCGGGGCACGAGCCAACTGTTCGACGATCTGTTCGGCCTGCCCCTGAGCCCGGCCATGGTGTGC
AAGCTCCAGCACCGAACCGCCGAGGCGCTGAAGCCGGTGGCCGAACAGGCCCTGGTGTACACCCGCGGGCACCCGGCCAACGTGGACGAGACCGGTTGGA
AGCAGGGGCGTCAGCGGGCCTGGCTGTGGGCCGCCGTGACCACGTTCGTGGTGGCGTTCCTGATCCGCCGGACCCGGGGCCGGGCCGCCTTTGATGACCT
GCGTGCCGGGTCCACGGCCGTGCATACGACGGACCGGTATCCGGTGTACACGCACCTCGACAAGTACAAGCGTCAACTCTGCTGGGCGCACCTGCGACGC
GATTTCCAGGCGATGATCGACCGGGGCGGTTCCGGACAGGCGATCGGCGCGGCTCTGTTGGCGTGTTCGGACGCCCTGTTCGAGAACTGGTATCGGGTGC
GGGACGGAACCCTCGCGCGGTCCACATGTCGCTCGACCTACATCCCCGCGTTGCGTCGTCAGGTCGGCACGCACCTGCGGAACGGGGCGGCGTGCGGCTG
CGCCAAGACCGCCACGACCTGCGCGGAACTGTTGTCGGTCGAGGCGTCGTTGTGGACGTTCGCGCGTGTCGTCGGCGTGGAACCGACCAACAACGCGGCC
GAGCGTGAGGTGCGTCACGCCGTGTGCTGGCGCAAAACCAGCTTCGGGACCGACAGCGAACGCGGGAGCCGGTTCGTGGAACGAATCCTCACGGTGATCG
CCTCGTGCCGCCGCCAGAAGCGCAACGTCTTGGCGTTCCTCATCGACGCCGTCACCGCACACCGGACCGGCGCGAAGGCACCGACGCTCGTTCCAGCTGA
AGCTCAACAACAGAACGTTGTGAATCCGCTACTCGCCAACTGTTGATACACTGCCGCATCACCCGTGAACGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa2001546+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VAEVAELKARLNQSSTNSSKPPSSDPPQVKLAPPKAPSGKRRGGQPGHPKAERTLLPPDEIRTLKPSVCRDCSRSLAGDDPAPAIHQVHELPVIKPHVTE
YRCHRLRCPHCGTTTVPAVPSEARTGYGPRAQAVAALLTGSCRLGKRGTSQLFDDLFGLPLSPAMVCKLQHRTAEALKPVAEQALVYTRGHPANVDETGW
KQGRQRAWLWAAVTTFVVAFLIRRTRGRAAFDDLRAGSTAVHTTDRYPVYTHLDKYKRQLCWAHLRRDFQAMIDRGGSGQAIGAALLACSDALFENWYRV
RDGTLARSTCRSTYIPALRRQVGTHLRNGAACGCAKTATTCAELLSVEASLWTFARVVGVEPTNNAAEREVRHAVCWRKTSFGTDSERGSRFVERILTVI
ASCRRQKRNVLAFLIDAVTAHRTGAKAPTLVPAEAQQQNVVNPLLANC

 

Blast result :
Comments
ISGob4 is 86% aa similar to ISGob1.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.