ISGob4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABGO00000000 | ND | Gemmata obscuriglobus | Gemmata obscuriglobus UQM 2246 |
DNA section
IS Length : 1576 bp
Ends
IR Length : 14/15
IRL : GTAAGCGTTCATGGGGGTGCGCCACCCGCTTTTGCCCGTCATTTTAGCCC
IRR : GTAAGCGTTCACGGGTGATGCGGCAGTGTATCAACAGTTGGCGAGTAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCGTCAGT | CCACTTTT | TTTAGGGTCC | 8 |
GAACCGGATT | CTTCCTTT | TCTTGCTGAA | 8 |
ACTGGGAGCT | AAGATTTG | AACACAATCC | 8 |
TAAGTTTAAA | GAATTGCC | ATATAGTGTA | 8 |
CCCGGGGGAT | t/cCCATCGC | TGTCTACGTC | 10 |
TGGCCTTATC | a/cAGTAATC | GCTTACGATT | 10 |
DNA sequence
GTAAGCGTTCATGGGGGTGCGCCACCCGCTTTTGCCCGTCATTTTAGCCCGTTTGGATACGCGGTTGCCACAAGCGGGCATGTTCCGTAATCGAGCAGAC
GTCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACTTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACTGCTCTGG
TGGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCAGAGCTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACTGGCCCCGCC
CAAGGCCCCTTCGGGGAAGCGTCGGGGCGGGCAACCGGGGCATCCCAAAGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCC
GTGTGCCGGGACTGCTCGCGGTCGCTGGCCGGGGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGT
ATCGGTGCCACCGGCTCCGGTGCCCCCACTGCGGCACGACCACGGTGCCCGCGGTGCCGTCGGAGGCGCGCACCGGATACGGCCCCCGGGCGCAGGCGGT
GGCCGCGCTTCTCACCGGCTCGTGCCGTCTGGGCAAGCGGGGCACGAGCCAACTGTTCGACGATCTGTTCGGCCTGCCCCTGAGCCCGGCCATGGTGTGC
AAGCTCCAGCACCGAACCGCCGAGGCGCTGAAGCCGGTGGCCGAACAGGCCCTGGTGTACACCCGCGGGCACCCGGCCAACGTGGACGAGACCGGTTGGA
AGCAGGGGCGTCAGCGGGCCTGGCTGTGGGCCGCCGTGACCACGTTCGTGGTGGCGTTCCTGATCCGCCGGACCCGGGGCCGGGCCGCCTTTGATGACCT
GCGTGCCGGGTCCACGGCCGTGCATACGACGGACCGGTATCCGGTGTACACGCACCTCGACAAGTACAAGCGTCAACTCTGCTGGGCGCACCTGCGACGC
GATTTCCAGGCGATGATCGACCGGGGCGGTTCCGGACAGGCGATCGGCGCGGCTCTGTTGGCGTGTTCGGACGCCCTGTTCGAGAACTGGTATCGGGTGC
GGGACGGAACCCTCGCGCGGTCCACATGTCGCTCGACCTACATCCCCGCGTTGCGTCGTCAGGTCGGCACGCACCTGCGGAACGGGGCGGCGTGCGGCTG
CGCCAAGACCGCCACGACCTGCGCGGAACTGTTGTCGGTCGAGGCGTCGTTGTGGACGTTCGCGCGTGTCGTCGGCGTGGAACCGACCAACAACGCGGCC
GAGCGTGAGGTGCGTCACGCCGTGTGCTGGCGCAAAACCAGCTTCGGGACCGACAGCGAACGCGGGAGCCGGTTCGTGGAACGAATCCTCACGGTGATCG
CCTCGTGCCGCCGCCAGAAGCGCAACGTCTTGGCGTTCCTCATCGACGCCGTCACCGCACACCGGACCGGCGCGAAGGCACCGACGCTCGTTCCAGCTGA
AGCTCAACAACAGAACGTTGTGAATCCGCTACTCGCCAACTGTTGATACACTGCCGCATCACCCGTGAACGCTTAC
GTCATGACGCCTGTTCCTCAACCGCCGGAACTGCCCGATAACTTACCACCGGCGGTGGTGGCGTATATTCGCGCCTTGGAGGCCACGATCACTGCTCTGG
TGGCCGAGGTCGCCGAACTCAAGGCCCGACTCAACCAGAGCTCCACCAACTCGTCGAAGCCGCCCTCGTCCGATCCTCCGCAGGTGAAACTGGCCCCGCC
CAAGGCCCCTTCGGGGAAGCGTCGGGGCGGGCAACCGGGGCATCCCAAAGCCGAGCGCACGCTCCTGCCACCCGATGAGATCCGGACCCTCAAGCCGTCC
GTGTGCCGGGACTGCTCGCGGTCGCTGGCCGGGGACGATCCGGCTCCGGCCATTCATCAGGTCCACGAGTTGCCCGTTATCAAACCCCACGTGACCGAGT
ATCGGTGCCACCGGCTCCGGTGCCCCCACTGCGGCACGACCACGGTGCCCGCGGTGCCGTCGGAGGCGCGCACCGGATACGGCCCCCGGGCGCAGGCGGT
GGCCGCGCTTCTCACCGGCTCGTGCCGTCTGGGCAAGCGGGGCACGAGCCAACTGTTCGACGATCTGTTCGGCCTGCCCCTGAGCCCGGCCATGGTGTGC
AAGCTCCAGCACCGAACCGCCGAGGCGCTGAAGCCGGTGGCCGAACAGGCCCTGGTGTACACCCGCGGGCACCCGGCCAACGTGGACGAGACCGGTTGGA
AGCAGGGGCGTCAGCGGGCCTGGCTGTGGGCCGCCGTGACCACGTTCGTGGTGGCGTTCCTGATCCGCCGGACCCGGGGCCGGGCCGCCTTTGATGACCT
GCGTGCCGGGTCCACGGCCGTGCATACGACGGACCGGTATCCGGTGTACACGCACCTCGACAAGTACAAGCGTCAACTCTGCTGGGCGCACCTGCGACGC
GATTTCCAGGCGATGATCGACCGGGGCGGTTCCGGACAGGCGATCGGCGCGGCTCTGTTGGCGTGTTCGGACGCCCTGTTCGAGAACTGGTATCGGGTGC
GGGACGGAACCCTCGCGCGGTCCACATGTCGCTCGACCTACATCCCCGCGTTGCGTCGTCAGGTCGGCACGCACCTGCGGAACGGGGCGGCGTGCGGCTG
CGCCAAGACCGCCACGACCTGCGCGGAACTGTTGTCGGTCGAGGCGTCGTTGTGGACGTTCGCGCGTGTCGTCGGCGTGGAACCGACCAACAACGCGGCC
GAGCGTGAGGTGCGTCACGCCGTGTGCTGGCGCAAAACCAGCTTCGGGACCGACAGCGAACGCGGGAGCCGGTTCGTGGAACGAATCCTCACGGTGATCG
CCTCGTGCCGCCGCCAGAAGCGCAACGTCTTGGCGTTCCTCATCGACGCCGTCACCGCACACCGGACCGGCGCGAAGGCACCGACGCTCGTTCCAGCTGA
AGCTCAACAACAGAACGTTGTGAATCCGCTACTCGCCAACTGTTGATACACTGCCGCATCACCCGTGAACGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 200 | 1546 | + | No |
Chemistry : DDE
ORF sequence :
VAEVAELKARLNQSSTNSSKPPSSDPPQVKLAPPKAPSGKRRGGQPGHPKAERTLLPPDEIRTLKPSVCRDCSRSLAGDDPAPAIHQVHELPVIKPHVTE
YRCHRLRCPHCGTTTVPAVPSEARTGYGPRAQAVAALLTGSCRLGKRGTSQLFDDLFGLPLSPAMVCKLQHRTAEALKPVAEQALVYTRGHPANVDETGW
KQGRQRAWLWAAVTTFVVAFLIRRTRGRAAFDDLRAGSTAVHTTDRYPVYTHLDKYKRQLCWAHLRRDFQAMIDRGGSGQAIGAALLACSDALFENWYRV
RDGTLARSTCRSTYIPALRRQVGTHLRNGAACGCAKTATTCAELLSVEASLWTFARVVGVEPTNNAAEREVRHAVCWRKTSFGTDSERGSRFVERILTVI
ASCRRQKRNVLAFLIDAVTAHRTGAKAPTLVPAEAQQQNVVNPLLANC
YRCHRLRCPHCGTTTVPAVPSEARTGYGPRAQAVAALLTGSCRLGKRGTSQLFDDLFGLPLSPAMVCKLQHRTAEALKPVAEQALVYTRGHPANVDETGW
KQGRQRAWLWAAVTTFVVAFLIRRTRGRAAFDDLRAGSTAVHTTDRYPVYTHLDKYKRQLCWAHLRRDFQAMIDRGGSGQAIGAALLACSDALFENWYRV
RDGTLARSTCRSTYIPALRRQVGTHLRNGAACGCAKTATTCAELLSVEASLWTFARVVGVEPTNNAAEREVRHAVCWRKTSFGTDSERGSRFVERILTVI
ASCRRQKRNVLAFLIDAVTAHRTGAKAPTLVPAEAQQQNVVNPLLANC
Blast result :
Comments
ISGob4 is 86% aa similar to ISGob1.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.
2] Ward,N. (2007) Direct Submission GenBank.