ISFtu1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF357005 | ND | Francisella tularensis | Francisella tularensis subsp. tularensis Schu S4 |
DNA section
IS Length : 1208 bp
Ends
IR Length : 16/17
IRL : TATAGTTAATCCGAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGA
IRR : TATAGTTAATCCGAGAGTATTTTGTTAAACACATAAGAGATAGCATCACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TATAGTTAATCCGAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATA
TTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTG
TAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGA
AATGTTATAATGTCTAATAAAAATGCCATCATATAGCCAAGATTTTAGAGACATCGTAATTAATAAACATGAAGAAGGTATGACGGAGTTCGAGCTGAGT
AAGTTTTTTAACATAGATAAGCGTACAGTTGTTTCATGGATAGAGTTTTATAAAAGAACCGGAGATTATAGTTCAAAGCAAGGAGTTGGTTGTGGCAGAG
TCGCTAGCTTTACCGATAAAACATTGATTGAACAGTATTTGATAGATCATCCAGATGCAAGTGCATTAGATATAAAAGAAGCATTAGCCCCTGATATTCC
AAGAAGTACATTTTATGATTGTCTTAATAGACTTGGTTTTAGTTTTAAAAAAAGACTCCAAAATATAAGCAAAGAAAAGAACATGAAAGGTTGGAGTATA
TAGAAAAACTAAAAGAAATAGCTCAAAACTTGTTATTTTATATAGATGAGATGGGGTGTGACAATAAGCTTTCTATCCTAAGAGGATGGTCACTAATTGG
TGAGCCTAGTTATGGTGAGGTTTTAGCATATCAAACACAAAGAAGAAGTATTGTTGCTGGATATAATTATGCAGATAAAAAGATTATAGCTCTATTAGAG
TACAGCGGATATACCAATACTGAAATTTTTAATCAATGGTTTGAGGAACACTTATGCCCATCATTAAAACCTAAAACTACTATAGTAATGGATAATGCTA
GTTTCCATAAATCCTCTAAGCTGATTGAAATAGCCAATAAATTTGATGTACAAATATTATATCTACCTCCGTACTCTCCAGATTTAAATCCTATTGAAAA
GGTTTAGGCTAACTTTAAAAAAATATTTAGAAAAGTGAATAATAGTTTTGAAAAATTTTGTGATGCTATCTCTTATGTGTTTAACAAAATACTCTCGGAT
TAACTATA
TTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTG
TAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGAAAAAGATATTTGTAGA
AATGTTATAATGTCTAATAAAAATGCCATCATATAGCCAAGATTTTAGAGACATCGTAATTAATAAACATGAAGAAGGTATGACGGAGTTCGAGCTGAGT
AAGTTTTTTAACATAGATAAGCGTACAGTTGTTTCATGGATAGAGTTTTATAAAAGAACCGGAGATTATAGTTCAAAGCAAGGAGTTGGTTGTGGCAGAG
TCGCTAGCTTTACCGATAAAACATTGATTGAACAGTATTTGATAGATCATCCAGATGCAAGTGCATTAGATATAAAAGAAGCATTAGCCCCTGATATTCC
AAGAAGTACATTTTATGATTGTCTTAATAGACTTGGTTTTAGTTTTAAAAAAAGACTCCAAAATATAAGCAAAGAAAAGAACATGAAAGGTTGGAGTATA
TAGAAAAACTAAAAGAAATAGCTCAAAACTTGTTATTTTATATAGATGAGATGGGGTGTGACAATAAGCTTTCTATCCTAAGAGGATGGTCACTAATTGG
TGAGCCTAGTTATGGTGAGGTTTTAGCATATCAAACACAAAGAAGAAGTATTGTTGCTGGATATAATTATGCAGATAAAAAGATTATAGCTCTATTAGAG
TACAGCGGATATACCAATACTGAAATTTTTAATCAATGGTTTGAGGAACACTTATGCCCATCATTAAAACCTAAAACTACTATAGTAATGGATAATGCTA
GTTTCCATAAATCCTCTAAGCTGATTGAAATAGCCAATAAATTTGATGTACAAATATTATATCTACCTCCGTACTCTCCAGATTTAAATCCTATTGAAAA
GGTTTAGGCTAACTTTAAAAAAATATTTAGAAAAGTGAATAATAGTTTTGAAAAATTTTGTGATGCTATCTCTTATGTGTTTAACAAAATACTCTCGGAT
TAACTATA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
381 bp | 126 aa | 323 | 703 | + | No |
Description : First part of the transposase
ORF sequence :
MPSYSQDFRDIVINKHEEGMTEFELSKFFNIDKRTVVSWIEFYKRTGDYSSKQGVGCGRVASFTDKTLIEQYLIDHPDASALDIKEALAPDIPRSTFYDC
LNRLGFSFKKRLQNISKEKNMKGWSI
LNRLGFSFKKRLQNISKEKNMKGWSI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
459 bp | 152 aa | 649 | 1107 | + | No |
Description : Second part of the transposase
ORF sequence :
KKTPKYKQRKEHERLEYIEKLKEIAQNLLFYIDEMGCDNKLSILRGWSLIGEPSYGEVLAYQTQRRSIVAGYNYADKKIIALLEYSGYTNTEIFNQWFEE
HLCPSLKPKTTIVMDNASFHKSSKLIEIANKFDVQILYLPPYSPDLNPIEKV
HLCPSLKPKTTIVMDNASFHKSSKLIEIANKFDVQILYLPPYSPDLNPIEKV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
785 bp | 261 aa | 323 | 1107 | + | Yes |
Chemistry : DDE
ORF sequence :
MPSYSQDFRDIVINKHEEGMTEFELSKFFNIDKRTVVSWIEFYKRTGDYSSKQGVGCGRVASFTDKTLIEQYLIDHPDASALDIKEALAPDIPRSTFYDC
LNRLGFSFKKKTPKYKQRKEHERLEYIEKLKEIAQNLLFYIDEMGCDNKLSILRGWSLIGEPSYGEVLAYQTQRRSIVAGYNYADKKIIALLEYSGYTNT
EIFNQWFEEHLCPSLKPKTTIVMDNASFHKSSKLIEIANKFDVQILYLPPYSPDLNPIEKV
LNRLGFSFKKKTPKYKQRKEHERLEYIEKLKEIAQNLLFYIDEMGCDNKLSILRGWSLIGEPSYGEVLAYQTQRRSIVAGYNYADKKIIALLEYSGYTNT
EIFNQWFEEHLCPSLKPKTTIVMDNASFHKSSKLIEIANKFDVQILYLPPYSPDLNPIEKV
Blast result :
Comments
ISFtu1 is 50%(ORF1)and 56% (ORF2) aa similar to IS630-Spn1(aa8 to 110 ; aa154 to 257).
This element contains a series of 16 bp tandem repeat (18 copies).
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 6 2012.
This element contains a series of 16 bp tandem repeat (18 copies).
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 6 2012.
References
1]Johansson,A., Goransson,I., Larsson,P. and Sjostedt,A.(2001) J. Clin. Microbiol. 39 (9), 3140-3146