ISEfa4
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY082011 | ND | Enterococcus faecium | Enterococcus faecium 10/96A |
DNA section
IS Length : 1896 bp
Ends
Left end : ACAGAATTAGGCAGAAGTCGCCCATCCTCTATAGGTGGGTGATGAATGCCGTTCGGTATGAGGGTTACCGTTGGTAACTCGAAGACCGACAACTAAGGCG II struct. : Yes
Right end : GTTAGTAAAGAAATACGCTATCAAGTATGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAGAACCGTCAGGTTTAGCTAAGTGGTGAGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTATTTACTT | TTTA | AAACAGACTGTCCG | TCAC |
DNA sequence
ACAGAATTAGGCAGAAGTCGCCCATCCTCTATAGGTGGGTGATGAATGCCGTTCGGTATGAGGGTTACCGTTGGTAACTCGAAGACCGACAACTAAGGCG
TATTGCCTTTTTATTTTGTTCCATGTTACAATCAGTCTATACAAGAAATGAGTTGATATAACATGGAATTAGATACAAATAATCATTCAGTATTTCTTCT
TTATTACCACCTTGTTTTAGTAACGAAATATCGTAGACAAGTGATTGATGATGAAATATCTGATTATGCCAAAACTACTTTTGAAAGAATTTCAGAATCG
TATCACATTACTTTAGTGGAGTGGAATCATGATAAAGACCACGTTCATATTATGTTCAAAGCTCAACCTAAAACAGAATTGACAAAATTCATCAATGCCT
ATAAAAGTGCCAGCTCAAGATTGATAAAACGTGACTTTCCAAGAGTCAAACAATTTCTTTGGAAAGAAATGTTCTGGTCTAAAAGTTTTTGTCTTCTGAC
AACTGGTGGCGCACCAATTGATGTGATTAAGAAGTATATCCAAAATCAAGGAAACAATCATAAATAGAAAGTAGGTGAACTTTATGGAACAACTAAAAGC
ATACAAATTCAGAATCTATCCAACAGAGGAACAAGAAATCTTCTTTGCCAAATCTTTTGGTTGTGTCCGTAAGGTCTACAATCTAATGCTTGATGACCGA
AAAAAGGCGTATGAAGAAGTTAAAAATGATTCTTCTAAAAAAATGACTTTTCCGACACCAGCTAAATACAAGAAAGAATTTCCGTTTTTGAAAGAAATTG
ATAGCCTTGCTTTAGCCAATGCCCAACTTAATTTAGATAAAGCATACAAGAATTTTTTTCGGGATAAATCCGTTGGATTTCCACGTTTCAAAAGTAAGAA
AAATCCTGTTCAGAGTTATACAACGAATAATCAAAATGGTACAGTTGCTTTGATTGATAGTAAATTCATCAAAGTTCCTAAATTGAAGTCATTAGTAAGA
ATTAAGCTTCATAGACAACCAAAAGGGATTATCAAATCTGCTACAATATCACGTCATTCTAGCGGTAAATACTATATTTCTTTGTTGTGTAAAGAAGAAA
TTATCGAATTACCTAAAACTAATTCCACAATTGGTATTGACTTAGGTATTATGGACTTTGCGATTCTTTCTGATGGACAAAAAATTGATAATAATAAATT
CACGTCCAAAATGGAAAAGAAACTAAAGCGTGAACAACGCAAATTGTCTAGGCGTGCTTTATTGGCTAAAAATAAAGGTACCAATCTATTTGAAGCTAAA
AATTATCAAAAACAAAAACGCAAAGTAGCTAGATTGCATGAAAAAGTAATGAATCAACGTACTGATTTTCTGAATAAGTTGAGTACAGAAATGATCAAAA
ATCACGATATTATCTGTATTGAAGACTTAAACACAAAAGGTATGTTGCGAAATCATAAATTAGCTAAAAGTATTTCTGATGTTTCTTGGTCAAAGTTTGT
GACTAAATTACAATACAAGGCTGACTGGTATGGACGAAAAATCATCAAAGTAGATAAATGGTTTCCGTCTAGTCAGATTTGTTCAGAGTGCGGACATAAA
GATGGCAAGAAATCTCTTGAAATTCGAGAATGGACTTGTCCTGTTTGTCATACTCATCATGATCGTGATATCAATGCTAGTATCAATATTCTGACCGAAG
GTCTAAGACTACATTCTATGGGATTGGCTTAGATCCAATCATCAAGAACCGTAGGAACTACGGGGATAGCTTGGTAAATAAGAGACACCGCTGTTAGTAA
AGAAATACGCTATCAAGTATGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAGAACCGTCAGGTTTAGCTAAGTGGTGAGTAGTTCAC
TATTGCCTTTTTATTTTGTTCCATGTTACAATCAGTCTATACAAGAAATGAGTTGATATAACATGGAATTAGATACAAATAATCATTCAGTATTTCTTCT
TTATTACCACCTTGTTTTAGTAACGAAATATCGTAGACAAGTGATTGATGATGAAATATCTGATTATGCCAAAACTACTTTTGAAAGAATTTCAGAATCG
TATCACATTACTTTAGTGGAGTGGAATCATGATAAAGACCACGTTCATATTATGTTCAAAGCTCAACCTAAAACAGAATTGACAAAATTCATCAATGCCT
ATAAAAGTGCCAGCTCAAGATTGATAAAACGTGACTTTCCAAGAGTCAAACAATTTCTTTGGAAAGAAATGTTCTGGTCTAAAAGTTTTTGTCTTCTGAC
AACTGGTGGCGCACCAATTGATGTGATTAAGAAGTATATCCAAAATCAAGGAAACAATCATAAATAGAAAGTAGGTGAACTTTATGGAACAACTAAAAGC
ATACAAATTCAGAATCTATCCAACAGAGGAACAAGAAATCTTCTTTGCCAAATCTTTTGGTTGTGTCCGTAAGGTCTACAATCTAATGCTTGATGACCGA
AAAAAGGCGTATGAAGAAGTTAAAAATGATTCTTCTAAAAAAATGACTTTTCCGACACCAGCTAAATACAAGAAAGAATTTCCGTTTTTGAAAGAAATTG
ATAGCCTTGCTTTAGCCAATGCCCAACTTAATTTAGATAAAGCATACAAGAATTTTTTTCGGGATAAATCCGTTGGATTTCCACGTTTCAAAAGTAAGAA
AAATCCTGTTCAGAGTTATACAACGAATAATCAAAATGGTACAGTTGCTTTGATTGATAGTAAATTCATCAAAGTTCCTAAATTGAAGTCATTAGTAAGA
ATTAAGCTTCATAGACAACCAAAAGGGATTATCAAATCTGCTACAATATCACGTCATTCTAGCGGTAAATACTATATTTCTTTGTTGTGTAAAGAAGAAA
TTATCGAATTACCTAAAACTAATTCCACAATTGGTATTGACTTAGGTATTATGGACTTTGCGATTCTTTCTGATGGACAAAAAATTGATAATAATAAATT
CACGTCCAAAATGGAAAAGAAACTAAAGCGTGAACAACGCAAATTGTCTAGGCGTGCTTTATTGGCTAAAAATAAAGGTACCAATCTATTTGAAGCTAAA
AATTATCAAAAACAAAAACGCAAAGTAGCTAGATTGCATGAAAAAGTAATGAATCAACGTACTGATTTTCTGAATAAGTTGAGTACAGAAATGATCAAAA
ATCACGATATTATCTGTATTGAAGACTTAAACACAAAAGGTATGTTGCGAAATCATAAATTAGCTAAAAGTATTTCTGATGTTTCTTGGTCAAAGTTTGT
GACTAAATTACAATACAAGGCTGACTGGTATGGACGAAAAATCATCAAAGTAGATAAATGGTTTCCGTCTAGTCAGATTTGTTCAGAGTGCGGACATAAA
GATGGCAAGAAATCTCTTGAAATTCGAGAATGGACTTGTCCTGTTTGTCATACTCATCATGATCGTGATATCAATGCTAGTATCAATATTCTGACCGAAG
GTCTAAGACTACATTCTATGGGATTGGCTTAGATCCAATCATCAAGAACCGTAGGAACTACGGGGATAGCTTGGTAAATAAGAGACACCGCTGTTAGTAA
AGAAATACGCTATCAAGTATGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAGAACCGTCAGGTTTAGCTAAGTGGTGAGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
405 bp | 134 aa | 167 | 571 | + | No |
Chemistry : Y1
ORF sequence :
MELDTNNHSVFLLYYHLVLVTKYRRQVIDDEISDYAKTTFERISESYHITLVEWNHDKDHVHIMFKAQPKTELTKFINAYKSASSRLIKRDFPRVKQFLW
KEMFWSKSFCLLTTGGAPIDVIKKYIQNQGNNHK
KEMFWSKSFCLLTTGGAPIDVIKKYIQNQGNNHK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1149 bp | 382 aa | 588 | 1736 | + | No |
AG : TnpB
ORF sequence :
MEQLKAYKFRIYPTEEQEIFFAKSFGCVRKVYNLMLDDRKKAYEEVKNDSSKKMTFPTPAKYKKEFPFLKEIDSLALANAQLNLDKAYKNFFRDKSVGFP
RFKSKKNPVQSYTTNNQNGTVALIDSKFIKVPKLKSLVRIKLHRQPKGIIKSATISRHSSGKYYISLLCKEEIIELPKTNSTIGIDLGIMDFAILSDGQK
IDNNKFTSKMEKKLKREQRKLSRRALLAKNKGTNLFEAKNYQKQKRKVARLHEKVMNQRTDFLNKLSTEMIKNHDIICIEDLNTKGMLRNHKLAKSISDV
SWSKFVTKLQYKADWYGRKIIKVDKWFPSSQICSECGHKDGKKSLEIREWTCPVCHTHHDRDINASINILTEGLRLHSMGLA
RFKSKKNPVQSYTTNNQNGTVALIDSKFIKVPKLKSLVRIKLHRQPKGIIKSATISRHSSGKYYISLLCKEEIIELPKTNSTIGIDLGIMDFAILSDGQK
IDNNKFTSKMEKKLKREQRKLSRRALLAKNKGTNLFEAKNYQKQKRKVARLHEKVMNQRTDFLNKLSTEMIKNHDIICIEDLNTKGMLRNHKLAKSISDV
SWSKFVTKLQYKADWYGRKIIKVDKWFPSSQICSECGHKDGKKSLEIREWTCPVCHTHHDRDINASINILTEGLRLHSMGLA
Blast result :
Comments
ISEfa4 is 62% (ORF1) aa similar to IS606 and 66% (ORF2) to IS1341.
References
1] Depardieu,F., Reynolds,P.E. and Courvalin,P. (2002) Direct submission GenBank.