ISEf1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004668 ND Enterococcus faecalis
Enterococcus faecalis V583
DNA section
IS Length : 1338 bp

Ends


IR Length : 23/29

IRL : GAGAGTGTAAAATATTTTGTGTAAATGAAAAAATCCATACAAAAAAGGAA
IRR : GGGAGCGTCAATAATTTTGTGTAAATAAATTGTCCTCCTGCAAAATAATT

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTAATATTAAGAATGTTTTTAAATAA8
TATCGCTGAAATTTAACCCACAATAGTA8
CTTAATCGAACTGTAAATATTGGCGGTG8
GTTATCGTACGTTAACTTTTGAATCCCT8
GACCTTGGTATATCATCATTTGGAAAAC8

DNA sequence

GAGAGTGTAAAATATTTTGTGTAAATGAAAAAATCCATACAAAAAAGGAAGTCGCTTCTGTAGAATAAAGTTAACGACAACCAATTCACAGAAAAGAGGA
CTTCCCTATGAATGATTTTACTACAGAAATTGTGCAAACTCTAGTCACTAAAGGCGATTTAAATGAATTATTCCGTTCGCACTTAGAAAAAGCGATAAAC
ACACTCCTACGGACTGAATTAACGGCTTTTTTAGATTACGAAAAATATGATCGCACTGGTTTTAATTCAGGTAATTCGAGAAACGGTTCTTACTTTCGAT
CAATCAAAACCGAATATGGTGAATTAACATTGGAAATACCTAGAGATCGTAATGGTGAGTTTAAACAACAAACTTTACCAGCCTACAAAAGAACAAACGA
TACATTGGAAACCACTATTATCCATTTATTCGAAAAAGGTGTTACGATGTCTGAAATTGCTGATTTGATCGAAAAAATGTACGGTCATCACTATACTCCA
CAAACCATGTCCAACATGACTAAAGTTCTGACTGAAGAAGTAAATGCCTTTAAATCCAGAGCCTTAAATGATAAGTATGTCGCTATTTTTATGGACGCTA
CTTACATTCCACTAAAACGTCAAACCGTATCCAAAGAAGCGATTTATATTGCCATTGGTATACGAGAAGACGGCACTAAAGAAGTACTGAGTTATGCGAT
TGCTCCAACTGAATCAACATACGTTTGGAATGAGCTGCTACAGGATATTAACTCCAGAGGAGTTCAAGAAGTCTTGCTTTTTATTACGGACGGCTTAAAA
GGCATGAAAGATACTATCCATCAAATTTATCCTAAAGCAAAATATCAGCATTGTTGTATCCATGTATCTCGTAATATCGCTCATAAAGTACGTGTCAAAG
ACCGAAAAGAAATCTGTGATGACTTTAAGGCTGTTTATCAAGCTAACTCAAAAGAAGAAGCGAATACCTTCTTATCCGGCATGATTGAGAAATGGAAGAA
AAACTATCCTAAAGTGACGCAGTCACTCATAGAAAACCAAGACTTATTAACTTTTTATGATTTTCCACCTAGCATTCGTAGAACCATTTACTCAACCAAT
CTAATCGAGTCTTTCAATAAGCAAATTAAAAGATACAGCCGTAGAAAAGAGCAGTTTCAAAATGAAGAATCACTAGAACGCTTTCTAGTCAGCATTTTTG
ATACATACAATCAAAAATTTCTAAACAGAAGCCATAAAGGTTTTCAACAGGTAACCGATACATTAGTTTCAATGTTTACTGAGTAACTAATTATTTTGCA
GGAGGACAATTTATTTACACAAAATTATTGACGCTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa1081286+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDFTTEIVQTLVTKGDLNELFRSHLEKAINTLLRTELTAFLDYEKYDRTGFNSGNSRNGSYFRSIKTEYGELTLEIPRDRNGEFKQQTLPAYKRTNDTL
ETTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKSRALNDKYVAIFMDATYIPLKRQTVSKEAIYIAIGIREDGTKEVLSYAIAP
TESTYVWNELLQDINSRGVQEVLLFITDGLKGMKDTIHQIYPKAKYQHCCIHVSRNIAHKVRVKDRKEICDDFKAVYQANSKEEANTFLSGMIEKWKKNY
PKVTQSLIENQDLLTFYDFPPSIRRTIYSTNLIESFNKQIKRYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLVSMFTE

 

Blast result :
Comments
ISEf1 is 75% aa similar to IS1310. There are 6 intact copies of ISEf1 in this strain, and one copy lacks a direct repeat.
References
1] Paulsen,I., Banerjei,L., Myers,G.S.A., Nelson,K.E., Seshadri,R., Read,T.D., Fouts,D.E., Eisen,J.A., Gill,S.R., Heidelberg,J.F., Tettelin,H., Dodson,R.J., Umayam,L., Brinkac,L., Beanan,M., Daugherty,S., DeBoy,R.T., Durkin,S., Kolonay,J., Madupu,R., Nelson,W., Vamathevan,J., Tran,B., Upton,J., Hansen,T., Shetty,J., Khouri,H., Utterback,T., Radune,D., Ketchum,K.A., Dougherty,B.A. and Fraser,C.M. (2003) Science 299 (5615), 2071-2074