ISEc29

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FJ187822 ND Escherichia coli
Escherichia coli plasmid pCOP1
DNA section
IS Length : 1325 bp

Ends


IR Length : 19/21

IRL : CTGAGGTATCCCCAGAAATTCTGTAGTTAAAATAAAATGTTAGTTGATTG
IRR : CTGAGGGATCCCCACAAAATTTCCATTCATACAATCAGCTATCAGCCTGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCAAACCACGTTGTCTAGA0

DNA sequence

CTGAGGTATCCCCAGAAATTCTGTAGTTAAAATAAAATGTTAGTTGATTGGGGAACATTCATGGCGGTTCCTGATCTGATCATTCGCCAAAACTCCCACA
CCGCGGATGCTCACCATGAATGTAAAAGCTATGCTCGCTGATTTCCTCACCTTTGTCACGCCAAAATCAATGCATAAAGCCCGATTTTCGGTTTTGCTAG
ATGCGGTAACCGCCCTGGCAAAGGATGCGTGTTGCACCGTTACTGCGATTGGCCGGGCGATGCCTGGCTCTTCAGATAAGGTCAGTATCAAACGGGCAGA
TCGTCTACTCAATAATCCTAACCTGCAACGAGAGCTGCCATTGATTTATGCTGCGCTGACGGCTTCTATTGTTGGCCATAAAACTAAGCCGATGATTTTG
GTTGACTGGAGCAATGCCGATACTGCCAAGCGACACTTTATCCTGCGTGCCAGCATTGCCGCTGACGGTAGAGCGTTGACTCTGCTACAGAAGATTGCCG
CCGCAGAAGATTATACCTGCCCACACCTACACGGGGCGTTTTTAAAGCAGCTTAAAGCCATGCTACCCAAGGACTGTAAGCCCGTAATTGTCACTGACGC
GGGGTTTAAAGTTCCATGGCTGAAACAAGTGCGTAAGCTGGGATGGCATTATGTAGCTAGAGTTCGAGGCAATGTGAAGCTTAAATTGGCAGAGCAGGAC
AAGTTTATCAGTGTTAATCAGCTTTATCGGCAAGCGAAGAAGGATCCAAAAAGTGTAGGAAAAATCATGCTTGCCCAAACACAACACTATGAAACGCAGG
CCGTCCTGGTTGGCAAAGGTTATAAGCTATTGAAACGCGATAAAAATAAGACGTATAAGGAACCATGGTTGTTGGTGTCATCCTTAGCTGACTGCCATGG
GTATGCGGATAAAATTGCTAAGTGCTACAGTAGCCGAATGCAAATTGAAGAAAGCTTCCGTGATCAGAAAAGTCACCGCTATGGCCTGGGTAGCGATTTG
CATGGTACCAAGAAGAAATCTCGCTTAGAGATACTGCTACTACTGGCCGCATTGGTTAATTGGTTTCATTACCTGCTAGGTAGCGCAGCGGAGAAAGCGG
GTTTGCACCTGCGTTATCAAGCTAACACCGTTAAAAATAGGCGGGTATTGGCCCTGAATTTCCTTGGGATATTACTTTGCAAAGAACCCAAACAGCGAAT
ACGCAGGCAATATTATCAGCAGGGACTTAAACAAATACTACAGTGGGTGGTTCAGTGGGACTGGGCAGTAATCAAACAGGCTGATAGCTGATTGTATGAA
TGGAAATTTTGTGGGGATCCCTCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1185 bp394 aa1071291+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTMNVKAMLADFLTFVTPKSMHKARFSVLLDAVTALAKDACCTVTAIGRAMPGSSDKVSIKRADRLLNNPNLQRELPLIYAALTASIVGHKTKPMILVD
WSNADTAKRHFILRASIAADGRALTLLQKIAAAEDYTCPHLHGAFLKQLKAMLPKDCKPVIVTDAGFKVPWLKQVRKLGWHYVARVRGNVKLKLAEQDKF
ISVNQLYRQAKKDPKSVGKIMLAQTQHYETQAVLVGKGYKLLKRDKNKTYKEPWLLVSSLADCHGYADKIAKCYSSRMQIEESFRDQKSHRYGLGSDLHG
TKKKSRLEILLLLAALVNWFHYLLGSAAEKAGLHLRYQANTVKNRRVLALNFLGILLCKEPKQRIRRQYYQQGLKQILQWVVQWDWAVIKQADS

 

Blast result :
Comments
ISEc29 is 56% aa similar to ISShfr1.
References
1] Submitted by ISfinder (2011).
2] Bercot,B., Poirel,L. and Nordmann,P. (2008) Antimicrob. Agents Chemother. 52 (12), 4526-4527