ISEc29
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FJ187822 | ND | Escherichia coli | Escherichia coli plasmid pCOP1 |
DNA section
IS Length : 1325 bp
Ends
IR Length : 19/21
IRL : CTGAGGTATCCCCAGAAATTCTGTAGTTAAAATAAAATGTTAGTTGATTG
IRR : CTGAGGGATCCCCACAAAATTTCCATTCATACAATCAGCTATCAGCCTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCAAACCAC | GTTGTCTAGA | 0 |
DNA sequence
CTGAGGTATCCCCAGAAATTCTGTAGTTAAAATAAAATGTTAGTTGATTGGGGAACATTCATGGCGGTTCCTGATCTGATCATTCGCCAAAACTCCCACA
CCGCGGATGCTCACCATGAATGTAAAAGCTATGCTCGCTGATTTCCTCACCTTTGTCACGCCAAAATCAATGCATAAAGCCCGATTTTCGGTTTTGCTAG
ATGCGGTAACCGCCCTGGCAAAGGATGCGTGTTGCACCGTTACTGCGATTGGCCGGGCGATGCCTGGCTCTTCAGATAAGGTCAGTATCAAACGGGCAGA
TCGTCTACTCAATAATCCTAACCTGCAACGAGAGCTGCCATTGATTTATGCTGCGCTGACGGCTTCTATTGTTGGCCATAAAACTAAGCCGATGATTTTG
GTTGACTGGAGCAATGCCGATACTGCCAAGCGACACTTTATCCTGCGTGCCAGCATTGCCGCTGACGGTAGAGCGTTGACTCTGCTACAGAAGATTGCCG
CCGCAGAAGATTATACCTGCCCACACCTACACGGGGCGTTTTTAAAGCAGCTTAAAGCCATGCTACCCAAGGACTGTAAGCCCGTAATTGTCACTGACGC
GGGGTTTAAAGTTCCATGGCTGAAACAAGTGCGTAAGCTGGGATGGCATTATGTAGCTAGAGTTCGAGGCAATGTGAAGCTTAAATTGGCAGAGCAGGAC
AAGTTTATCAGTGTTAATCAGCTTTATCGGCAAGCGAAGAAGGATCCAAAAAGTGTAGGAAAAATCATGCTTGCCCAAACACAACACTATGAAACGCAGG
CCGTCCTGGTTGGCAAAGGTTATAAGCTATTGAAACGCGATAAAAATAAGACGTATAAGGAACCATGGTTGTTGGTGTCATCCTTAGCTGACTGCCATGG
GTATGCGGATAAAATTGCTAAGTGCTACAGTAGCCGAATGCAAATTGAAGAAAGCTTCCGTGATCAGAAAAGTCACCGCTATGGCCTGGGTAGCGATTTG
CATGGTACCAAGAAGAAATCTCGCTTAGAGATACTGCTACTACTGGCCGCATTGGTTAATTGGTTTCATTACCTGCTAGGTAGCGCAGCGGAGAAAGCGG
GTTTGCACCTGCGTTATCAAGCTAACACCGTTAAAAATAGGCGGGTATTGGCCCTGAATTTCCTTGGGATATTACTTTGCAAAGAACCCAAACAGCGAAT
ACGCAGGCAATATTATCAGCAGGGACTTAAACAAATACTACAGTGGGTGGTTCAGTGGGACTGGGCAGTAATCAAACAGGCTGATAGCTGATTGTATGAA
TGGAAATTTTGTGGGGATCCCTCAG
CCGCGGATGCTCACCATGAATGTAAAAGCTATGCTCGCTGATTTCCTCACCTTTGTCACGCCAAAATCAATGCATAAAGCCCGATTTTCGGTTTTGCTAG
ATGCGGTAACCGCCCTGGCAAAGGATGCGTGTTGCACCGTTACTGCGATTGGCCGGGCGATGCCTGGCTCTTCAGATAAGGTCAGTATCAAACGGGCAGA
TCGTCTACTCAATAATCCTAACCTGCAACGAGAGCTGCCATTGATTTATGCTGCGCTGACGGCTTCTATTGTTGGCCATAAAACTAAGCCGATGATTTTG
GTTGACTGGAGCAATGCCGATACTGCCAAGCGACACTTTATCCTGCGTGCCAGCATTGCCGCTGACGGTAGAGCGTTGACTCTGCTACAGAAGATTGCCG
CCGCAGAAGATTATACCTGCCCACACCTACACGGGGCGTTTTTAAAGCAGCTTAAAGCCATGCTACCCAAGGACTGTAAGCCCGTAATTGTCACTGACGC
GGGGTTTAAAGTTCCATGGCTGAAACAAGTGCGTAAGCTGGGATGGCATTATGTAGCTAGAGTTCGAGGCAATGTGAAGCTTAAATTGGCAGAGCAGGAC
AAGTTTATCAGTGTTAATCAGCTTTATCGGCAAGCGAAGAAGGATCCAAAAAGTGTAGGAAAAATCATGCTTGCCCAAACACAACACTATGAAACGCAGG
CCGTCCTGGTTGGCAAAGGTTATAAGCTATTGAAACGCGATAAAAATAAGACGTATAAGGAACCATGGTTGTTGGTGTCATCCTTAGCTGACTGCCATGG
GTATGCGGATAAAATTGCTAAGTGCTACAGTAGCCGAATGCAAATTGAAGAAAGCTTCCGTGATCAGAAAAGTCACCGCTATGGCCTGGGTAGCGATTTG
CATGGTACCAAGAAGAAATCTCGCTTAGAGATACTGCTACTACTGGCCGCATTGGTTAATTGGTTTCATTACCTGCTAGGTAGCGCAGCGGAGAAAGCGG
GTTTGCACCTGCGTTATCAAGCTAACACCGTTAAAAATAGGCGGGTATTGGCCCTGAATTTCCTTGGGATATTACTTTGCAAAGAACCCAAACAGCGAAT
ACGCAGGCAATATTATCAGCAGGGACTTAAACAAATACTACAGTGGGTGGTTCAGTGGGACTGGGCAGTAATCAAACAGGCTGATAGCTGATTGTATGAA
TGGAAATTTTGTGGGGATCCCTCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1185 bp | 394 aa | 107 | 1291 | + | No |
Chemistry : DDE
ORF sequence :
MLTMNVKAMLADFLTFVTPKSMHKARFSVLLDAVTALAKDACCTVTAIGRAMPGSSDKVSIKRADRLLNNPNLQRELPLIYAALTASIVGHKTKPMILVD
WSNADTAKRHFILRASIAADGRALTLLQKIAAAEDYTCPHLHGAFLKQLKAMLPKDCKPVIVTDAGFKVPWLKQVRKLGWHYVARVRGNVKLKLAEQDKF
ISVNQLYRQAKKDPKSVGKIMLAQTQHYETQAVLVGKGYKLLKRDKNKTYKEPWLLVSSLADCHGYADKIAKCYSSRMQIEESFRDQKSHRYGLGSDLHG
TKKKSRLEILLLLAALVNWFHYLLGSAAEKAGLHLRYQANTVKNRRVLALNFLGILLCKEPKQRIRRQYYQQGLKQILQWVVQWDWAVIKQADS
WSNADTAKRHFILRASIAADGRALTLLQKIAAAEDYTCPHLHGAFLKQLKAMLPKDCKPVIVTDAGFKVPWLKQVRKLGWHYVARVRGNVKLKLAEQDKF
ISVNQLYRQAKKDPKSVGKIMLAQTQHYETQAVLVGKGYKLLKRDKNKTYKEPWLLVSSLADCHGYADKIAKCYSSRMQIEESFRDQKSHRYGLGSDLHG
TKKKSRLEILLLLAALVNWFHYLLGSAAEKAGLHLRYQANTVKNRRVLALNFLGILLCKEPKQRIRRQYYQQGLKQILQWVVQWDWAVIKQADS
Blast result :
Comments
ISEc29 is 56% aa similar to ISShfr1.
References
1] Submitted by ISfinder (2011).
2] Bercot,B., Poirel,L. and Nordmann,P. (2008) Antimicrob. Agents Chemother. 52 (12), 4526-4527
2] Bercot,B., Poirel,L. and Nordmann,P. (2008) Antimicrob. Agents Chemother. 52 (12), 4526-4527