ISEc11
- Family IS110
- Group IS1111
Isoform Synonym(s) ISSso1
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| DQ361537 | Y | Escherichia coli | Escherichia coli EIEC O115 681 Escherichia coli EIEC O135 HN280 Escherichia coli EIEC O135 HN11 Escherichia coli EIEC O135 HN13 Escherichia coli EIEC O135 HN19 Escherichia coli EIEC O135 HN300 Escherichia coli EIEC O143 4608 Escherichia coli EIEC O144 53638 Escherichia coli EIEC O124 13-80 |
DNA section
IS Length : 1443 bp
Ends
IR Length : 13
IRL : aaatgtaATGAACGCATCCCACACAATTAAACACGGAGCAGTATGATGGT
IRR : ----tatATGAACGCATCCCGTTTGCAAGGCATCCATTGTTTTGACATGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
AAATGTAATGAACGCATCCCACACAATTAAACACGGAGCAGTATGATGGTTAAAAGGGTGAAACTGGCAGGTGTGGAGCCTCGCAGATTTCCGGCATCAT
AGTGCCCAATACGGGATGCATAAAGCTCCCTCAGACTGGAGACTCCACAAATGAAATATACACCGGTTGGCGTTGATATCGCAAAACATGTCATTCAGAT
TCACTTCATCAATGAGCACACAGGTGAAGTGGTTGATAAACAGTTGCGTAGACAGGATTTTCTGACGTTCTTCGGCAACCGTGAGCCATGCCTGATTGGT
ATGGAGGCCTGTGGAGGTTCTCAGCACTGGGCACGGGAACTGACAAAACTTGGTCATAAAGTCCGGTTGTTGCAGGCCCGCTTCGTTAAGGCATTCGTCA
TGGGCAATAAGAATGATGTGATGGATGCCCGGGCTATCTGGATGGCGGTTCAGCAGCCGGGTAAAGAAATCGCCGTAAAAACAGAAGAACAGCAGTCGGT
ACTGGTTCTGCACCGTACCCGCATGCAACTGGTGAAGTTCCGGACCGCACAAATTAATGCCCTGCACGGGACGTTACTGGAGTTTGGTGAAACCATCCAC
AAAGGCCGGGCAGCGATGGAGCGGGAGTTCCCCGAAGCACTGGAACGGATGAAAGAGAGACTGCCACCGTATCTCATTATGGTTCTGGAAAACCAGTACA
ACCGACTGAATGAGCTGGACTCACTGATAGAGGATATTGAAAAACAGCTTACCAGCGTGGCGAGGCAGAATGAAACCTGTAAGCGGTTGCTGGATATTCC
TGGCGTTGGACCACTTATTGCGACGGCAGCGGTGGCCACCATGGGGGAAGCATCAGCGTTTAAATCGGGGCGAGAGTTCGCCGCATATGTTGGTCTGGTT
CCAAAACAAACTGGCTCCGGAGGGAAAGTACGTCTGCTGGGGATAAGCAAACGTGGTGACACTTATCTCAGGACATTATTTATCCACGGTGCAAGAGCGG
TGGCATTAGTAGCTAAAGAGCCTGGCCCGTGGATAACCGAACTGAAAAAACGTCGTCCAGCCAGTGTGGCAATCGTCGCCATGGCAAACAAGCTGGCACG
AACAGTATGGGCGATAACCGCCCATGACCGTAAGTATGACAGGAACCACGTCAGTATCAGACCATATTAATCGCTGATACCATTAAACAATGAACTCTTA
ACAAAAGGGTGAATGCTGAAAGGTTGCTATGGCGGCCAGAGTGATGACAAAGACAGGTAAGACCGTGACTCACTAAACCTGAACAGTATTTTGGGCTTGA
AGTCCGCCGTGAAAATAAGGGGTGAGTCGGCGAATTACATAGGGGCTCGCAGCGTTACGGCTGCAATAAAGCCGGATATAAAGCTGCAACCTACCCGTCA
TGTCAAAACAATGGATGCCTTGCAAACGGGATGCGTTCATATA
AGTGCCCAATACGGGATGCATAAAGCTCCCTCAGACTGGAGACTCCACAAATGAAATATACACCGGTTGGCGTTGATATCGCAAAACATGTCATTCAGAT
TCACTTCATCAATGAGCACACAGGTGAAGTGGTTGATAAACAGTTGCGTAGACAGGATTTTCTGACGTTCTTCGGCAACCGTGAGCCATGCCTGATTGGT
ATGGAGGCCTGTGGAGGTTCTCAGCACTGGGCACGGGAACTGACAAAACTTGGTCATAAAGTCCGGTTGTTGCAGGCCCGCTTCGTTAAGGCATTCGTCA
TGGGCAATAAGAATGATGTGATGGATGCCCGGGCTATCTGGATGGCGGTTCAGCAGCCGGGTAAAGAAATCGCCGTAAAAACAGAAGAACAGCAGTCGGT
ACTGGTTCTGCACCGTACCCGCATGCAACTGGTGAAGTTCCGGACCGCACAAATTAATGCCCTGCACGGGACGTTACTGGAGTTTGGTGAAACCATCCAC
AAAGGCCGGGCAGCGATGGAGCGGGAGTTCCCCGAAGCACTGGAACGGATGAAAGAGAGACTGCCACCGTATCTCATTATGGTTCTGGAAAACCAGTACA
ACCGACTGAATGAGCTGGACTCACTGATAGAGGATATTGAAAAACAGCTTACCAGCGTGGCGAGGCAGAATGAAACCTGTAAGCGGTTGCTGGATATTCC
TGGCGTTGGACCACTTATTGCGACGGCAGCGGTGGCCACCATGGGGGAAGCATCAGCGTTTAAATCGGGGCGAGAGTTCGCCGCATATGTTGGTCTGGTT
CCAAAACAAACTGGCTCCGGAGGGAAAGTACGTCTGCTGGGGATAAGCAAACGTGGTGACACTTATCTCAGGACATTATTTATCCACGGTGCAAGAGCGG
TGGCATTAGTAGCTAAAGAGCCTGGCCCGTGGATAACCGAACTGAAAAAACGTCGTCCAGCCAGTGTGGCAATCGTCGCCATGGCAAACAAGCTGGCACG
AACAGTATGGGCGATAACCGCCCATGACCGTAAGTATGACAGGAACCACGTCAGTATCAGACCATATTAATCGCTGATACCATTAAACAATGAACTCTTA
ACAAAAGGGTGAATGCTGAAAGGTTGCTATGGCGGCCAGAGTGATGACAAAGACAGGTAAGACCGTGACTCACTAAACCTGAACAGTATTTTGGGCTTGA
AGTCCGCCGTGAAAATAAGGGGTGAGTCGGCGAATTACATAGGGGCTCGCAGCGTTACGGCTGCAATAAAGCCGGATATAAAGCTGCAACCTACCCGTCA
TGTCAAAACAATGGATGCCTTGCAAACGGGATGCGTTCATATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1020 bp | 339 aa | 151 | 1170 | + | No |
Chemistry : DEDD
ORF sequence :
MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNREPCLIGMEACGGSQHWARELTKLGHKVRLLQARFVKAFVMGNKNDVMDARAIWMAV
QQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSLIEDIEKQL
TSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKK
RRPASVAIVAMANKLARTVWAITAHDRKYDRNHVSIRPY
QQPGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGRAAMEREFPEALERMKERLPPYLIMVLENQYNRLNELDSLIEDIEKQL
TSVARQNETCKRLLDIPGVGPLIATAAVATMGEASAFKSGREFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPWITELKK
RRPASVAIVAMANKLARTVWAITAHDRKYDRNHVSIRPY
Blast result :
Comments
Transposition exerted by a circular intermediate in which the junction region between the IRs is constituted by the seven 5'terminal nucleotides joined to the three 3' terminal nucleotides (GTAAAATATA).The 13 bp subterminal IRs are flanked by three bp terminal sequences: TSL
N10 ( GTNA4NANTG ) N10
N10 ( GTNA4NANTG ) N10
References
1] Prosseda Gianni (2006) Direct submission