ISCco2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KJ610809 | ND | Campylobacter coli | Campylobacter coli SH-CCD11C145 |
DNA section
IS Length : 7852 bp
Ends
IR Length : 23/25
IRL : GGCTCTGTCACAACAAACGGTTGATTTTTGACGAGAAATAGCGTATAATA
IRR : GGCTATGTCACAACAAACAGTTGATAAATAGCCATTTTTATAGGGGAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTTTATAA | NNNNNNNNNN | 8 |
DNA sequence
GGCTCTGTCACAACAAACGGTTGATTTTTGACGAGAAATAGCGTATAATAATAGTAAGAAACAGTACCACCGAAGGAGGTAATTGGATATGCCTACTATC
AAAGACGCATTAGATATTATCGGTAAGTTGACTGTCGCAGAGCAGGAAAGCCTTAAAACAATGCTTTTAAGCACTGCCTTTGTAAAGTCTTTGAATATTG
AAGATTTCGTGGCAAAGGAACGCTTTGCAAATGGTCGTGTATGCCCTCTTTGTGGTTGTATTCATGTGGTTCGTAACGGTCATCGTAAAGACGGTACGCA
GCGATATGTATGCAAGGATTGTGGCAAGTCCTTCGTGATTGCTACGAACTCCATTGTGTCTGGTACAAGAAAAGACTTGTCCGTATGGGAACAGTATATT
GATTGTATGATGAATGGTTTATCCATTCGTAAGACTGCTGTTGCTTGTGGTATTCATAGAAACACCGCTTTCCTTTGGAGGCACAAGATTTTAGACGCTC
TTCAGAATATGGCAGACGATGTTACTCTTAACGGCATTATTGAGGCTGACGAAACTTTTTTCGCCATCTCGTACAAGGGCAATCATAGTAAGAGTAAGAC
ATTTACTATGCCACGCAAGGCTCATAAGCGTGGTCATTCTACACATATCAGAGGCTTGTCCAAAGAAAAAGTATGTGTTCCTTGTGCGGTTAATAGGAAT
GGCTTGTCTATCTCCAAGATTACGAATACTGGTAGAGTTTCTACAAAAGATTTACATCATATTTATGATGGTAGGATTAAGACCAATTCCACTCTTGTTA
CGGACAAGATGAACTCCTATGTGAGATTTACGAATGCCAACGGCATTGACCTTGTACAGTTAAAGACGGGCAAAGCCAAGAAAGGCATTTATAATATACA
GCATATCAATAGCTACCATAGTCAGTTAAAGAGGTTTATGCGTGGTTTTAATGGTGTTTCCACCAAATATCTGAACAACTATCTTGTGTGGAATAACCTT
GTAAATTATGCCAAAGAAAGTGACATGGAGAAAAGGAACATCTTCTTGACTTTCGTTTTGGCAACATTGAAAACTGCTAAATGCAGAGACTTATCAAACA
GACCAGCAGTTCCTCTGGTCGCCTAATTAGAATTTGTGGAGGTAAAATATAGATGAATCAAGGTAGAATTATTGTAATCACAGGTGCGCCGGGGACAGGA
AAAACTACAACGGCATCTGCTGTTGCAAAAGAATCAGATTTGGAAAAGTCTGTGCATATGCACACAGATGACTTTTATCATTATCATGTAAGAAAGCCAA
GCGCAAGGGAGTATGATGATTGCTGCAATGAATTTTGGAATGTAACACCTTATGTTATTAAAGGATTGTGCCGTAAGGAAATTTTATTTGCTATTGATCA
TTTTAATCAGATTGTTCGCCATGAGCTGCTGAGAATGATATCATGGAAGGTCGGCATCGAAACAGGCTTTAAATTAAGTGTAGGCAAGAACTATAAGTTT
ATTGAAAGGTATATATCCGAGGATTTGTGGGAGAAACTTTTGTCCACCTACCGGATGGATTCCTATGAAAACATATGGGAAGCATTATTTCTATGCCATC
AATTGTTCAGGGCGGTATCCGGTGAGGTGGCGGAAAGGCTTCATTATGCCTATCCGGAGTATGATAGGAATATAACAAAATATACCAGGGACATGTATAA
AAAATACACTGGTAAAACCGGCTGCCTGGATAGCACATATGCCGCTGATATAGAAGAGAGGCGGGAACAGTGATTACAGAAATGAAAGCAGGGCACCTGA
AAGATATCGATAAACCCAGCGAACCATTTGAGGTGATAGGTAAGATTATACCGAGGTATGAAAACGAGAATTGGACCTTTACAGAATTACTCTATGAAGC
GCCATATTTAAAAAGCTACCAAGACGAAGAGGATGAAGAGGATGAGGAGGCAGATTGCCTTGAATATATTGACAATACTGATAAGATAATATATCTTTAC
TACCAAGACGATAAATGCGTCGGAAAAGTTAAACTGCGAAAAAATTGGAACCGGTACGCTTATATAGAAGATATCGCCGTATGTAAGGATTTCAGGGGGC
AAGGCATAGGCAGCGCGCTTATCAATATATCTATAGAATGGGCAAAGCATAAAAACTTGCATGGACTAATGCTTGAAACCCAGGACAATAACCTTATAGC
TTGTAAATTCTATCATAATTGTGGTTTCAAAATCGGCTCCGTCGATACTATGTTATACGCCAACTTTGAAAACAACTTTGAAAAAGCTGTTTTCTGGTAT
TTAAGGTTTTAGAATGCAAGGAACAGTGAATTGGAGTTCGTCTTGTTATAATTAGCTTCTTGGGGTATCTTTAAATACTGTAGAAAAGAGGAAGGAAATA
ATAAATGGCTAAAATGAGAATATCACCGGAATTGAAAAAACTGATCGAAAAATACCGCTGCGTAAAAGATACGGAAGGAATGTCTCCTGCTAAGGTATAT
AAGCTGGTGGGAGAAAATGAAAACCTATATTTAAAAATGACGGACAGCCGGTATAAAGGGACCACCTATGATGTGGAACGGGAAAAGGACATGATGCTAT
GGCTGGAAGGAAAGCTGCCTGTTCCAAAGGTCCTGCACTTTGAACGGCATGATGGCTGGAGCAATCTGCTCATGAGTGAGGCCGATGGCGTCCTTTGCTC
GGAAGAGTATGAAGATGAACAAAGCCCTGAAAAGATTATCGAGCTGTATGCGGAGTGCATCAGGCTCTTTCACTCCATCGACATATCGGATTGTCCCTAT
ACGAATAGCTTAGACAGCCGCTTAGCCGAATTGGATTACTTACTGAATAACGATCTGGCCGATGTGGATTGCGAAAACTGGGAAGAAGACACTCCATTTA
AAGATCCGCGCGAGCTGTATGATTTTTTAAAGACGGAAAAGCCCGAAGAGGAACTTGTCTTTTCCCACGGCGACCTGGGAGACAGCAACATCTTTGTGAA
AGATGGCAAAGTAAGTGGCTTTATTGATCTTGGGAGAAGCGGCAGGGCGGACAAGTGGTATGACATTGCCTTCTGCGTCCGGTCGATCAGGGAGGATATC
GGGGAAGAACAGTATGTCGAGCTATTTTTTGACTTACTGGGGATCAAGCCTGATTGGGAGAAAATAAAATATTATATTTTACTGGATGAATTGTTTTAGT
ACCTAGATTTAGATGTCTAAAAAGCTTTAACTACAAGCTTTTTAGACATCTAATCTTTTCTGAAGTACATCCGCAACTGTCCATACTCTGATGTTTTATA
TCTTTTCTAAAAGTTCGCTAGATAGAGTTCTATATTAGAGATGTAAAGAGTTTTGGTGAAGAGGTTTGTGAGTATGGCTTTTATAACCAGGGTGCAATGA
GAAGCACTAACAGCAGCTAGCTTAACAAGCCTCCCACACAGCCGACAAAGCATCGGCTGCGGGGCGGTATCTTCTGTGATACTTAGTATCATAAAAAATC
GTACTTGAAAGATTTGATTAACGGTGGTATAATTGAACTGGTTCAAATAAATGACCAATAAATAATTAAGGAGATCATAACCATGACAAATGTTGAAAAA
ATCAGCGAGTTCCTAACACAGGCAAAAGTTTTCACCTTCCTTACCGTTGATAACGGCCAGCCCAAAGGTCGTCCTTTCGGCTTCCATCTTGTAGATGGAG
ATCGTATTTACTTCGGAACAGGCACCTTCAAGAATTGCTTCAAGCAACTTAGCGCAGATCCCCATGTTGAAGTCATGGCTGTAAACGACGACAAGTTTAT
GCGCTATGACGGTCTTGCAAAGATCGTTAAGGATGATGCGCTTCTTGCAAAGGTTCATGAGGCTATGCCTCAGCTCATGGAAACTTACGACAAAAACGGC
TGGGAGATCGTGCTTTTCTATCTCGAGAACGGTCATGCTGAAATTCGCGGATTATTTGAAGTAGAGGAAGAGTTTGATGTGTAATGACTGATGAGTTTAA
GTTTGACACATCACAGATAATCACGCTGGATGAACGTTTCGGCAAATGTCCTTATGCGACTGCGCTGCAAAAGTCAATATAAAAATGCAGGTTTTGGACA
AAATAAGAATGTAGGTTTTCCTACATTTTTATTTTGTCTTTTTAATCATCATCAGTCATTAGCTGAAGCTGATCTTTTAATCTGTAGGAAGGACCATTAA
TGTTCAGTACCTGACTGTGGTGTAACAGTCTGTCAAGGAGTGCATTCGTAAGAACAGGATCTCCAAAAACCTCTGGCCATTTGGAGAATGTCAGGTTAGT
CGTGATAAGGGTGCTGGACTTCTCATATCTCTTCGCAATGAGATTGAAGAAGAGATTGGCTGTAAATCCGTTTGTGAATGGCTGATCGATGCGCAAAACG
GCACCTATGCCGATTATGGAATAGAACTTCTGGATAAAACCTACGAGAAGATAGCAGATTAAATACTTAGGTGAATGAACTGTCATAAGAACGCATAGGA
TATACTTTTTATGGAAGTCACAGAGGAGGAATAAAATTTGAACAGGATTAACAGAGTAAAGATGCATAACACCATGAACATTTTCCTCGTTATCAGCTGC
GAAAAAGATCAGCAGGTGATTGTCTATTGTTTGCCACGAGACTGCACGAACCGGAGTTCCTGCTTCCACACCGGAAATAGTGTTGCCTTCCGGTGAAGGA
ATATAGTCACATACCGCTTCCAGCCTACCGGCTTCTGTATTGGCATAATGAAACTCCAAATCATAGAGCCACCCTATACAAAACAGGGCAACAAGTGCGG
AAAGAATTGCCGCTATTAAGCGAGTGCGTTTAACACGCTTTAAAAATCTAAGTGCACGCTGTGGCGCTTTTTCAATAGGAACCTGCCTGCGCATATCCTC
TTCAAGCTGGCGGCAGGCCGCACAATGCTCAATGTGTTCTCTGACCATAGCAGAGGTCTCTGTCTCGGTCAATTCTTCAAGATAGGATGGGAGTAAATCC
CTGACTACGCAGCAGTCAAGATTGGTTTCACGCATTGTTATCACCTCCGATAATCTTTACAAGTTTTTCCTTACCACGATAAAAGCGCACTCGAGCCCAT
ACTTCGCTGTGCCCAAGAATGTCACCGATGTCACGGAAAGAGAAATCACCGGCTAATCGCAGATGGATTACTTCACGAGTTTCGGCATCTAACTGTTGCA
TTGCTCGATATAGTGCAAAACGCTCTTGCCGGTTCTCAAACTCTTTCGTGGGATTATCAGGAGCCGCAACATGAGTAAGTTCGCTTTCTTCCACAAGAGT
GGTGCGCTTACTTGCGATTTTTTCTTGTACTGCGGAAACAGTATCTTTGATTGAATGCGTAGTTGTATCTATAACATTTAATTCATAGATTCCCAAATTG
GAAAATTGCTTCCACATTGTTTCAACTAATTCAATATTTGTTTCTCTGTCTAACTTTGAGCGTTCGATAGCTCGCTTCATAGTTTCTTCTTTACTTGCCC
TTAAAACGATATACAAGGCGCGGAAATTTTAAAGCTCGAAGTGCCGACGGTGTTTGGAAAGGCAGGAGAGGTTCTTAAAAAAGCGGTGGAGCAATACAGA
CCCGACGCGGTGGTGTGCGTAGGTCAAGCCGGAGGGAGAGCCGCCATTACTCCCGAGATGATAGCCGTGAACATAATGGACGCGCGCATTCCCGACAACG
CCGGAAACAAGCCGTGCCACGAGCTTATAATAAAAGAGGGAAGAGAAGCGTATTTTTCCTCACTTCCGGTGAAGGATATCGAGAAAAATCTAAATGATAA
CGGAATTCCGTCGTCGGTATCGTATGGAGCGGACAACGAGTAAAAGAGTGACCGCCGAGATAACCCATTGCTCGGCGGTGTTCCTTTCCAAGTTAATTGC
GTGATATAGATTGAAAAGTGGATAGATTTATGATACAGTGAATAGATTTATGATATAATGAGTTATCAACAAATCGGAATTTGTGGAGGTAAAATATAGA
TAAATCAAGGTAGAATTATTGTAATCACAGGTGCGCCGGGGACAGGAAAAACTACAACGGCATCTGCTGTTGCAAAAGAATCAGATTTGGAAAAGTCTGT
GCATATGCACACAGATGACTTTTATCATTATTTGAGTAAAGGGGCAATACCACCGCATTTGCCAGAATCAAATGAGCAAAATTTGATTGTCATTGAAGCC
TTTTTAGAAGCTGCAAAGCGATATGCTCGTGGCGGATATGATGTAATTGTAGATGGAGTTGAGATAGATGGAATATAAATTATTAGAAGAACAAGATTTG
GGACTTATGTTAGATTTTGTTGATGATGAAAATACAAAATATAATGTAGATGTTTTAAAAAAATTTATAGATAATAAAAATGATTTTGGATTTATTGCAA
AGATAAATAATAAGATAGTAGGTTTTGCTTTTGGATATATTCTTTTGAAACCAGATGGAAGAAAAGTATTCTATCTTGACGCTATTGATGTTATGCCTGA
TTATCAAGGCAAAGGTTATGGAACGGGTTTAATATCATTTGCTCGTGATTATGCTAAAACTATTGATTGTTATAAAATGTATTTAATAACGAATAGAAGC
AATATTTCTGCTTGTAAATGTTATGAAAAAGCAGGAGGAATAAATAAAGTAGATGATGAAATTATTTATGTGTATGATTTTAAGGAGAAAAACTAATGGA
TATAAAAAAGATAATAGAAGAAAAATGCAATATAGTTGTTGATAGTATAAAGTTGATTGGTGAGGGTTATGACAGCAAAGCATACATTGTAAATAATGAA
TATGTTTTCAAAATCAAATTTAGTGCTAATAAGAAAAAAGGGTATGAAAAAGAAAAAGCAATATATGATTTTCTAAACAAAAAATTAAATACAAATATTA
AAATACCAAATATAGAATATTCATATATAAGTGAAGAATTATCTATTTTAGGATATAAAGAAATTAAAGGAACTTTTTTAACACCAGAAATATATTTTGC
CTTATCAAAAGAAAAGCAAGAATTATTAAAGCAAGATATTGCTATGTTTTTAAGACAAATGCACGATTTAGATTATAGTGAAATAAGTTCATATACGATA
GACAATAAACAAAATGTTTTAGAAGAATATCAATTACTTAAAGAAACAATATATGATAGTCTTACTGATATTGAAAAACAATATGTAGAAGAATTTATGC
AAAGATTAAATAGTACAACTATATTTGATGGTAAAAAATGCTTATGCCATAATGATTTTAGTTGTAATCATTTATTACTTGATGATGAAAATAGATTATG
TGGTGTAATAGATTTTGGAGATTCTGGAATTATAGATGAATACTGTGATTTCATATATTTGCTAGAAGATAGTGAAGAAGAAATTGGCGTGTCTTTTGGA
GAAGATATATTAAGATTATACGGAAATATTGATATTTCAAAAGCAAAGGAATATCAAGATGTTGTAGAACAATATTATCCAATAGAAACTATTGTATATG
GTATTGAAAATAATAGACCTGATTTTATAGAAAAAGGTAGAAAAGAGATTTATATAAGAACTCGCAAAGATGAAAAATTAAGGAAGTGATGATATGGTTA
AAAACTATCCGGAAGAAGTAGAAGAACAAGTTGATAAAATAAAGAAAGTTTTATAAATGGTGGTACAAATGGATATATATGATTTAATGAAACAAGTTAA
TGACGCATTCAATCAAAGATACTGTTTCAGCAGTAAAAGAAAAAATAGTAAGCGGTACGGCTTTACTATTTTAGACAATTCAAATTTGTAGGGGAGTTTT
AAGGCTCCCCTATAAAAATGGCTATTTATCAACTGTTTGTTGTGACATAGCC
AAAGACGCATTAGATATTATCGGTAAGTTGACTGTCGCAGAGCAGGAAAGCCTTAAAACAATGCTTTTAAGCACTGCCTTTGTAAAGTCTTTGAATATTG
AAGATTTCGTGGCAAAGGAACGCTTTGCAAATGGTCGTGTATGCCCTCTTTGTGGTTGTATTCATGTGGTTCGTAACGGTCATCGTAAAGACGGTACGCA
GCGATATGTATGCAAGGATTGTGGCAAGTCCTTCGTGATTGCTACGAACTCCATTGTGTCTGGTACAAGAAAAGACTTGTCCGTATGGGAACAGTATATT
GATTGTATGATGAATGGTTTATCCATTCGTAAGACTGCTGTTGCTTGTGGTATTCATAGAAACACCGCTTTCCTTTGGAGGCACAAGATTTTAGACGCTC
TTCAGAATATGGCAGACGATGTTACTCTTAACGGCATTATTGAGGCTGACGAAACTTTTTTCGCCATCTCGTACAAGGGCAATCATAGTAAGAGTAAGAC
ATTTACTATGCCACGCAAGGCTCATAAGCGTGGTCATTCTACACATATCAGAGGCTTGTCCAAAGAAAAAGTATGTGTTCCTTGTGCGGTTAATAGGAAT
GGCTTGTCTATCTCCAAGATTACGAATACTGGTAGAGTTTCTACAAAAGATTTACATCATATTTATGATGGTAGGATTAAGACCAATTCCACTCTTGTTA
CGGACAAGATGAACTCCTATGTGAGATTTACGAATGCCAACGGCATTGACCTTGTACAGTTAAAGACGGGCAAAGCCAAGAAAGGCATTTATAATATACA
GCATATCAATAGCTACCATAGTCAGTTAAAGAGGTTTATGCGTGGTTTTAATGGTGTTTCCACCAAATATCTGAACAACTATCTTGTGTGGAATAACCTT
GTAAATTATGCCAAAGAAAGTGACATGGAGAAAAGGAACATCTTCTTGACTTTCGTTTTGGCAACATTGAAAACTGCTAAATGCAGAGACTTATCAAACA
GACCAGCAGTTCCTCTGGTCGCCTAATTAGAATTTGTGGAGGTAAAATATAGATGAATCAAGGTAGAATTATTGTAATCACAGGTGCGCCGGGGACAGGA
AAAACTACAACGGCATCTGCTGTTGCAAAAGAATCAGATTTGGAAAAGTCTGTGCATATGCACACAGATGACTTTTATCATTATCATGTAAGAAAGCCAA
GCGCAAGGGAGTATGATGATTGCTGCAATGAATTTTGGAATGTAACACCTTATGTTATTAAAGGATTGTGCCGTAAGGAAATTTTATTTGCTATTGATCA
TTTTAATCAGATTGTTCGCCATGAGCTGCTGAGAATGATATCATGGAAGGTCGGCATCGAAACAGGCTTTAAATTAAGTGTAGGCAAGAACTATAAGTTT
ATTGAAAGGTATATATCCGAGGATTTGTGGGAGAAACTTTTGTCCACCTACCGGATGGATTCCTATGAAAACATATGGGAAGCATTATTTCTATGCCATC
AATTGTTCAGGGCGGTATCCGGTGAGGTGGCGGAAAGGCTTCATTATGCCTATCCGGAGTATGATAGGAATATAACAAAATATACCAGGGACATGTATAA
AAAATACACTGGTAAAACCGGCTGCCTGGATAGCACATATGCCGCTGATATAGAAGAGAGGCGGGAACAGTGATTACAGAAATGAAAGCAGGGCACCTGA
AAGATATCGATAAACCCAGCGAACCATTTGAGGTGATAGGTAAGATTATACCGAGGTATGAAAACGAGAATTGGACCTTTACAGAATTACTCTATGAAGC
GCCATATTTAAAAAGCTACCAAGACGAAGAGGATGAAGAGGATGAGGAGGCAGATTGCCTTGAATATATTGACAATACTGATAAGATAATATATCTTTAC
TACCAAGACGATAAATGCGTCGGAAAAGTTAAACTGCGAAAAAATTGGAACCGGTACGCTTATATAGAAGATATCGCCGTATGTAAGGATTTCAGGGGGC
AAGGCATAGGCAGCGCGCTTATCAATATATCTATAGAATGGGCAAAGCATAAAAACTTGCATGGACTAATGCTTGAAACCCAGGACAATAACCTTATAGC
TTGTAAATTCTATCATAATTGTGGTTTCAAAATCGGCTCCGTCGATACTATGTTATACGCCAACTTTGAAAACAACTTTGAAAAAGCTGTTTTCTGGTAT
TTAAGGTTTTAGAATGCAAGGAACAGTGAATTGGAGTTCGTCTTGTTATAATTAGCTTCTTGGGGTATCTTTAAATACTGTAGAAAAGAGGAAGGAAATA
ATAAATGGCTAAAATGAGAATATCACCGGAATTGAAAAAACTGATCGAAAAATACCGCTGCGTAAAAGATACGGAAGGAATGTCTCCTGCTAAGGTATAT
AAGCTGGTGGGAGAAAATGAAAACCTATATTTAAAAATGACGGACAGCCGGTATAAAGGGACCACCTATGATGTGGAACGGGAAAAGGACATGATGCTAT
GGCTGGAAGGAAAGCTGCCTGTTCCAAAGGTCCTGCACTTTGAACGGCATGATGGCTGGAGCAATCTGCTCATGAGTGAGGCCGATGGCGTCCTTTGCTC
GGAAGAGTATGAAGATGAACAAAGCCCTGAAAAGATTATCGAGCTGTATGCGGAGTGCATCAGGCTCTTTCACTCCATCGACATATCGGATTGTCCCTAT
ACGAATAGCTTAGACAGCCGCTTAGCCGAATTGGATTACTTACTGAATAACGATCTGGCCGATGTGGATTGCGAAAACTGGGAAGAAGACACTCCATTTA
AAGATCCGCGCGAGCTGTATGATTTTTTAAAGACGGAAAAGCCCGAAGAGGAACTTGTCTTTTCCCACGGCGACCTGGGAGACAGCAACATCTTTGTGAA
AGATGGCAAAGTAAGTGGCTTTATTGATCTTGGGAGAAGCGGCAGGGCGGACAAGTGGTATGACATTGCCTTCTGCGTCCGGTCGATCAGGGAGGATATC
GGGGAAGAACAGTATGTCGAGCTATTTTTTGACTTACTGGGGATCAAGCCTGATTGGGAGAAAATAAAATATTATATTTTACTGGATGAATTGTTTTAGT
ACCTAGATTTAGATGTCTAAAAAGCTTTAACTACAAGCTTTTTAGACATCTAATCTTTTCTGAAGTACATCCGCAACTGTCCATACTCTGATGTTTTATA
TCTTTTCTAAAAGTTCGCTAGATAGAGTTCTATATTAGAGATGTAAAGAGTTTTGGTGAAGAGGTTTGTGAGTATGGCTTTTATAACCAGGGTGCAATGA
GAAGCACTAACAGCAGCTAGCTTAACAAGCCTCCCACACAGCCGACAAAGCATCGGCTGCGGGGCGGTATCTTCTGTGATACTTAGTATCATAAAAAATC
GTACTTGAAAGATTTGATTAACGGTGGTATAATTGAACTGGTTCAAATAAATGACCAATAAATAATTAAGGAGATCATAACCATGACAAATGTTGAAAAA
ATCAGCGAGTTCCTAACACAGGCAAAAGTTTTCACCTTCCTTACCGTTGATAACGGCCAGCCCAAAGGTCGTCCTTTCGGCTTCCATCTTGTAGATGGAG
ATCGTATTTACTTCGGAACAGGCACCTTCAAGAATTGCTTCAAGCAACTTAGCGCAGATCCCCATGTTGAAGTCATGGCTGTAAACGACGACAAGTTTAT
GCGCTATGACGGTCTTGCAAAGATCGTTAAGGATGATGCGCTTCTTGCAAAGGTTCATGAGGCTATGCCTCAGCTCATGGAAACTTACGACAAAAACGGC
TGGGAGATCGTGCTTTTCTATCTCGAGAACGGTCATGCTGAAATTCGCGGATTATTTGAAGTAGAGGAAGAGTTTGATGTGTAATGACTGATGAGTTTAA
GTTTGACACATCACAGATAATCACGCTGGATGAACGTTTCGGCAAATGTCCTTATGCGACTGCGCTGCAAAAGTCAATATAAAAATGCAGGTTTTGGACA
AAATAAGAATGTAGGTTTTCCTACATTTTTATTTTGTCTTTTTAATCATCATCAGTCATTAGCTGAAGCTGATCTTTTAATCTGTAGGAAGGACCATTAA
TGTTCAGTACCTGACTGTGGTGTAACAGTCTGTCAAGGAGTGCATTCGTAAGAACAGGATCTCCAAAAACCTCTGGCCATTTGGAGAATGTCAGGTTAGT
CGTGATAAGGGTGCTGGACTTCTCATATCTCTTCGCAATGAGATTGAAGAAGAGATTGGCTGTAAATCCGTTTGTGAATGGCTGATCGATGCGCAAAACG
GCACCTATGCCGATTATGGAATAGAACTTCTGGATAAAACCTACGAGAAGATAGCAGATTAAATACTTAGGTGAATGAACTGTCATAAGAACGCATAGGA
TATACTTTTTATGGAAGTCACAGAGGAGGAATAAAATTTGAACAGGATTAACAGAGTAAAGATGCATAACACCATGAACATTTTCCTCGTTATCAGCTGC
GAAAAAGATCAGCAGGTGATTGTCTATTGTTTGCCACGAGACTGCACGAACCGGAGTTCCTGCTTCCACACCGGAAATAGTGTTGCCTTCCGGTGAAGGA
ATATAGTCACATACCGCTTCCAGCCTACCGGCTTCTGTATTGGCATAATGAAACTCCAAATCATAGAGCCACCCTATACAAAACAGGGCAACAAGTGCGG
AAAGAATTGCCGCTATTAAGCGAGTGCGTTTAACACGCTTTAAAAATCTAAGTGCACGCTGTGGCGCTTTTTCAATAGGAACCTGCCTGCGCATATCCTC
TTCAAGCTGGCGGCAGGCCGCACAATGCTCAATGTGTTCTCTGACCATAGCAGAGGTCTCTGTCTCGGTCAATTCTTCAAGATAGGATGGGAGTAAATCC
CTGACTACGCAGCAGTCAAGATTGGTTTCACGCATTGTTATCACCTCCGATAATCTTTACAAGTTTTTCCTTACCACGATAAAAGCGCACTCGAGCCCAT
ACTTCGCTGTGCCCAAGAATGTCACCGATGTCACGGAAAGAGAAATCACCGGCTAATCGCAGATGGATTACTTCACGAGTTTCGGCATCTAACTGTTGCA
TTGCTCGATATAGTGCAAAACGCTCTTGCCGGTTCTCAAACTCTTTCGTGGGATTATCAGGAGCCGCAACATGAGTAAGTTCGCTTTCTTCCACAAGAGT
GGTGCGCTTACTTGCGATTTTTTCTTGTACTGCGGAAACAGTATCTTTGATTGAATGCGTAGTTGTATCTATAACATTTAATTCATAGATTCCCAAATTG
GAAAATTGCTTCCACATTGTTTCAACTAATTCAATATTTGTTTCTCTGTCTAACTTTGAGCGTTCGATAGCTCGCTTCATAGTTTCTTCTTTACTTGCCC
TTAAAACGATATACAAGGCGCGGAAATTTTAAAGCTCGAAGTGCCGACGGTGTTTGGAAAGGCAGGAGAGGTTCTTAAAAAAGCGGTGGAGCAATACAGA
CCCGACGCGGTGGTGTGCGTAGGTCAAGCCGGAGGGAGAGCCGCCATTACTCCCGAGATGATAGCCGTGAACATAATGGACGCGCGCATTCCCGACAACG
CCGGAAACAAGCCGTGCCACGAGCTTATAATAAAAGAGGGAAGAGAAGCGTATTTTTCCTCACTTCCGGTGAAGGATATCGAGAAAAATCTAAATGATAA
CGGAATTCCGTCGTCGGTATCGTATGGAGCGGACAACGAGTAAAAGAGTGACCGCCGAGATAACCCATTGCTCGGCGGTGTTCCTTTCCAAGTTAATTGC
GTGATATAGATTGAAAAGTGGATAGATTTATGATACAGTGAATAGATTTATGATATAATGAGTTATCAACAAATCGGAATTTGTGGAGGTAAAATATAGA
TAAATCAAGGTAGAATTATTGTAATCACAGGTGCGCCGGGGACAGGAAAAACTACAACGGCATCTGCTGTTGCAAAAGAATCAGATTTGGAAAAGTCTGT
GCATATGCACACAGATGACTTTTATCATTATTTGAGTAAAGGGGCAATACCACCGCATTTGCCAGAATCAAATGAGCAAAATTTGATTGTCATTGAAGCC
TTTTTAGAAGCTGCAAAGCGATATGCTCGTGGCGGATATGATGTAATTGTAGATGGAGTTGAGATAGATGGAATATAAATTATTAGAAGAACAAGATTTG
GGACTTATGTTAGATTTTGTTGATGATGAAAATACAAAATATAATGTAGATGTTTTAAAAAAATTTATAGATAATAAAAATGATTTTGGATTTATTGCAA
AGATAAATAATAAGATAGTAGGTTTTGCTTTTGGATATATTCTTTTGAAACCAGATGGAAGAAAAGTATTCTATCTTGACGCTATTGATGTTATGCCTGA
TTATCAAGGCAAAGGTTATGGAACGGGTTTAATATCATTTGCTCGTGATTATGCTAAAACTATTGATTGTTATAAAATGTATTTAATAACGAATAGAAGC
AATATTTCTGCTTGTAAATGTTATGAAAAAGCAGGAGGAATAAATAAAGTAGATGATGAAATTATTTATGTGTATGATTTTAAGGAGAAAAACTAATGGA
TATAAAAAAGATAATAGAAGAAAAATGCAATATAGTTGTTGATAGTATAAAGTTGATTGGTGAGGGTTATGACAGCAAAGCATACATTGTAAATAATGAA
TATGTTTTCAAAATCAAATTTAGTGCTAATAAGAAAAAAGGGTATGAAAAAGAAAAAGCAATATATGATTTTCTAAACAAAAAATTAAATACAAATATTA
AAATACCAAATATAGAATATTCATATATAAGTGAAGAATTATCTATTTTAGGATATAAAGAAATTAAAGGAACTTTTTTAACACCAGAAATATATTTTGC
CTTATCAAAAGAAAAGCAAGAATTATTAAAGCAAGATATTGCTATGTTTTTAAGACAAATGCACGATTTAGATTATAGTGAAATAAGTTCATATACGATA
GACAATAAACAAAATGTTTTAGAAGAATATCAATTACTTAAAGAAACAATATATGATAGTCTTACTGATATTGAAAAACAATATGTAGAAGAATTTATGC
AAAGATTAAATAGTACAACTATATTTGATGGTAAAAAATGCTTATGCCATAATGATTTTAGTTGTAATCATTTATTACTTGATGATGAAAATAGATTATG
TGGTGTAATAGATTTTGGAGATTCTGGAATTATAGATGAATACTGTGATTTCATATATTTGCTAGAAGATAGTGAAGAAGAAATTGGCGTGTCTTTTGGA
GAAGATATATTAAGATTATACGGAAATATTGATATTTCAAAAGCAAAGGAATATCAAGATGTTGTAGAACAATATTATCCAATAGAAACTATTGTATATG
GTATTGAAAATAATAGACCTGATTTTATAGAAAAAGGTAGAAAAGAGATTTATATAAGAACTCGCAAAGATGAAAAATTAAGGAAGTGATGATATGGTTA
AAAACTATCCGGAAGAAGTAGAAGAACAAGTTGATAAAATAAAGAAAGTTTTATAAATGGTGGTACAAATGGATATATATGATTTAATGAAACAAGTTAA
TGACGCATTCAATCAAAGATACTGTTTCAGCAGTAAAAGAAAAAATAGTAAGCGGTACGGCTTTACTATTTTAGACAATTCAAATTTGTAGGGGAGTTTT
AAGGCTCCCCTATAAAAATGGCTATTTATCAACTGTTTGTTGTGACATAGCC
Protein section
ORF number : 10
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 1153 | 1773 | + | No |
Annotation : Streptothricin AdenyltransferaseDescription : Antibiotic resistance
ORF sequence :
MNQGRIIVITGAPGTGKTTTASAVAKESDLEKSVHMHTDDFYHYHVRKPSAREYDDCCNEFWNVTPYVIKGLCRKEILFAIDHFNQIVRHELLRMISWKV
GIETGFKLSVGKNYKFIERYISEDLWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMYKKYTGKTGCLDSTYAADI
EERREQ
GIETGFKLSVGKNYKFIERYISEDLWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMYKKYTGKTGCLDSTYAADI
EERREQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
531 bp | 176 aa | 1782 | 2312 | - | No |
Annotation : Streptothricin acetyltransferaseDescription : Antibiotic resistance
ORF sequence :
MKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEAPYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDIAV
CKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDTMLYANFENNFEKAVFWYLRF
CKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDTMLYANFENNFEKAVFWYLRF
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 1153 | 1773 | + | No |
Annotation : Streptothricin AdenyltransferaseDescription : Antibiotic resistance
ORF sequence :
MNQGRIIVITGAPGTGKTTTASAVAKESDLEKSVHMHTDDFYHYHVRKPSAREYDDCCNEFWNVTPYVIKGLCRKEILFAIDHFNQIVRHELLRMISWKV
GIETGFKLSVGKNYKFIERYISEDLWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMYKKYTGKTGCLDSTYAADI
EERREQ
GIETGFKLSVGKNYKFIERYISEDLWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMYKKYTGKTGCLDSTYAADI
EERREQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
531 bp | 176 aa | 1782 | 2312 | - | No |
Annotation : Streptothricin acetyltransferaseDescription : Antibiotic resistance
ORF sequence :
MKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEAPYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDIAV
CKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDTMLYANFENNFEKAVFWYLRF
CKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDTMLYANFENNFEKAVFWYLRF
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 345 aa | 89 | 1126 | + | No |
Chemistry : DDE
ORF sequence :
MPTIKDALDIIGKLTVAEQESLKTMLLSTAFVKSLNIEDFVAKERFANGRVCPLCGCIHVVRNGHRKDGTQRYVCKDCGKSFVIATNSIVSGTRKDLSVW
EQYIDCMMNGLSIRKTAVACGIHRNTAFLWRHKILDALQNMADDVTLNGIIEADETFFAISYKGNHSKSKTFTMPRKAHKRGHSTHIRGLSKEKVCVPCA
VNRNGLSISKITNTGRVSTKDLHHIYDGRIKTNSTLVTDKMNSYVRFTNANGIDLVQLKTGKAKKGIYNIQHINSYHSQLKRFMRGFNGVSTKYLNNYLV
WNNLVNYAKESDMEKRNIFLTFVLATLKTAKCRDLSNRPAVPLVA
EQYIDCMMNGLSIRKTAVACGIHRNTAFLWRHKILDALQNMADDVTLNGIIEADETFFAISYKGNHSKSKTFTMPRKAHKRGHSTHIRGLSKEKVCVPCA
VNRNGLSISKITNTGRVSTKDLHHIYDGRIKTNSTLVTDKMNSYVRFTNANGIDLVQLKTGKAKKGIYNIQHINSYHSQLKRFMRGFNGVSTKYLNNYLV
WNNLVNYAKESDMEKRNIFLTFVLATLKTAKCRDLSNRPAVPLVA
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
795 bp | 264 aa | 2405 | 3199 | + | No |
Annotation : Aminoglycoside 3-phosphotransferaseDescription :
ORF sequence :
MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSE
EYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD
GKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF
EYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKD
GKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 3583 | 3984 | + | No |
Annotation : Pyridoxamine 5-phosphate oxidaseDescription :
ORF sequence :
MTNVEKISEFLTQAKVFTFLTVDNGQPKGRPFGFHLVDGDRIYFGTGTFKNCFKQLSADPHVEVMAVNDDKFMRYDGLAKIVKDDALLAKVHEAMPQLME
TYDKNGWEIVLFYLENGHAEIRGLFEVEEEFDV
TYDKNGWEIVLFYLENGHAEIRGLFEVEEEFDV
Blast result :ORF 6
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
453 bp | 150 aa | 5480 | 5028 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKRAIERSKLDRETNIELVETMWKQFSNLGIYELNVIDTTTHSIKDTVSAVQEKIASKRTTLVEESELTHVAAPDNPTKEFENRQERFALYRAMQQLDAE
TREVIHLRLAGDFSFRDIGDILGHSEVWARVRFYRGKEKLVKIIGGDNNA
TREVIHLRLAGDFSFRDIGDILGHSEVWARVRFYRGKEKLVKIIGGDNNA
Blast result :ORF 7
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
429 bp | 142 aa | 6268 | 6696 | + | No |
Annotation : AcetyltransferaseDescription :
ORF sequence :
MEYKLLEEQDLGLMLDFVDDENTKYNVDVLKKFIDNKNDFGFIAKINNKIVGFAFGYILLKPDGRKVFYLDAIDVMPDYQGKGYGTGLISFARDYAKTID
CYKMYLITNRSNISACKCYEKAGGINKVDDEIIYVYDFKEKN
CYKMYLITNRSNISACKCYEKAGGINKVDDEIIYVYDFKEKN
Blast result :ORF 8
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 6696 | 7589 | - | No |
Annotation : PhosphotransferaseDescription :
ORF sequence :
MDIKKIIEEKCNIVVDSIKLIGEGYDSKAYIVNNEYVFKIKFSANKKKGYEKEKAIYDFLNKKLNTNIKIPNIEYSYISEELSILGYKEIKGTFLTPEIY
FALSKEKQELLKQDIAMFLRQMHDLDYSEISSYTIDNKQNVLEEYQLLKETIYDSLTDIEKQYVEEFMQRLNSTTIFDGKKCLCHNDFSCNHLLLDDENR
LCGVIDFGDSGIIDEYCDFIYLLEDSEEEIGVSFGEDILRLYGNIDISKAKEYQDVVEQYYPIETIVYGIENNRPDFIEKGRKEIYIRTRKDEKLRK
FALSKEKQELLKQDIAMFLRQMHDLDYSEISSYTIDNKQNVLEEYQLLKETIYDSLTDIEKQYVEEFMQRLNSTTIFDGKKCLCHNDFSCNHLLLDDENR
LCGVIDFGDSGIIDEYCDFIYLLEDSEEEIGVSFGEDILRLYGNIDISKAKEYQDVVEQYYPIETIVYGIENNRPDFIEKGRKEIYIRTRKDEKLRK
Blast result :
Comments
Transposons and insertional sequences are not common in Campylobacter. Campylobacter is naturally transformable by taking up DNA from the environment, so Campylobacter could easily acquire antibiotic resistance determinants and other exogenous genetic elements via natural transformation.
ISCco2 is 99% aa similar to ISSag10 for the ORF1, the transposase. Other ORF are passenger genes :
ORF2 : 206(1153-1773) - Streptothricin Adenyltransferase ;
ORF3 : 176(1782-2312) - Streptothricin acetyltransferase ;
ORF4 : 264(2405-3199) - aminoglycoside 3'-phosphotransferase ;
ORF5 : 133(3583-3984) - pyridoxamine 5'-phosphate oxidase ;
ORF6 : 150(5480-5028) - hypothetical protein ;
ORF7 : 142(6268-6696) - acetyltransferase ;
ORF8 : 297(6696-7589) - phosphotransferase.
ISCco2 is 99% aa similar to ISSag10 for the ORF1, the transposase. Other ORF are passenger genes :
ORF2 : 206(1153-1773) - Streptothricin Adenyltransferase ;
ORF3 : 176(1782-2312) - Streptothricin acetyltransferase ;
ORF4 : 264(2405-3199) - aminoglycoside 3'-phosphotransferase ;
ORF5 : 133(3583-3984) - pyridoxamine 5'-phosphate oxidase ;
ORF6 : 150(5480-5028) - hypothetical protein ;
ORF7 : 142(6268-6696) - acetyltransferase ;
ORF8 : 297(6696-7589) - phosphotransferase.
References
1] Fengru Deng. (2014) Direct submission.